SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    804001 8fhd:A (3.1) BS09 LPE ? GO:0001508 ... Q9UQD0 36696443
    804002 8fhd:A (3.1) BS10 Y01 ? GO:0001508 ... Q9UQD0 36696443
    804003 8fhd:A (3.1) BS11 P5S ? GO:0001508 ... Q9UQD0 36696443
    804004 8fhd:A (3.1) BS12 9Z9 ? GO:0001508 ... Q9UQD0 36696443
    804005 8fhd:A (3.1) BS13 P3X ? GO:0001508 ... Q9UQD0 36696443
    804006 8fhe:B (1.8) BS01 peptide ? GO:0003677 ... P37231 N/A
    804007 8fhe:B (1.8) BS02 GW9 ? GO:0003677 ... P37231 N/A
    804008 8fhf:A (2.1) BS01 XZK ? GO:0003677 ... P37231 N/A
    804009 8fhf:A (2.1) BS02 KNA ? GO:0003677 ... P37231 N/A
    804010 8fhf:B (2.1) BS01 XZK ? GO:0003677 ... P37231 N/A
    804011 8fhf:B (2.1) BS02 KNA ? GO:0003677 ... P37231 N/A
    804012 8fhg:B (1.8) BS01 peptide ? GO:0003677 ... P37231 N/A
    804013 8fhg:B (1.8) BS02 XZK ? GO:0003677 ... P37231 N/A
    804014 8fhh:A (3.09) BS01 ERG ? GO:0005216 ... Q9XSM3 37735536
    804015 8fhh:A (3.09) BS02 ERG ? GO:0005216 ... Q9XSM3 37735536
    804016 8fhh:A (3.09) BS03 ERG ? GO:0005216 ... Q9XSM3 37735536
    804017 8fhh:B (3.09) BS01 ERG ? GO:0005216 ... Q9XSM3 37735536
    804018 8fhh:B (3.09) BS02 ERG ? GO:0005216 ... Q9XSM3 37735536
    804019 8fhh:B (3.09) BS03 ERG ? GO:0005216 ... Q9XSM3 37735536
    804020 8fhh:C (3.09) BS01 ERG ? GO:0005216 ... Q9XSM3 37735536
    804021 8fhh:C (3.09) BS02 ERG ? GO:0005216 ... Q9XSM3 37735536
    804022 8fhh:C (3.09) BS03 ERG ? GO:0005216 ... Q9XSM3 37735536
    804023 8fhh:D (3.09) BS01 ERG ? GO:0005216 ... Q9XSM3 37735536
    804024 8fhh:D (3.09) BS02 ERG ? GO:0005216 ... Q9XSM3 37735536
    804025 8fhh:D (3.09) BS03 ERG ? GO:0005216 ... Q9XSM3 37735536
    804026 8fhi:A (3.25) BS01 ERG ? GO:0005216 ... Q9XSM3 37735536
    804027 8fhi:A (3.25) BS02 ERG ? GO:0005216 ... Q9XSM3 37735536
    804028 8fhi:A (3.25) BS03 3VV ? GO:0005216 ... Q9XSM3 37735536
    804029 8fhi:A (3.25) BS04 ERG ? GO:0005216 ... Q9XSM3 37735536
    804030 8fhi:B (3.25) BS01 ERG ? GO:0005216 ... Q9XSM3 37735536
    804031 8fhi:B (3.25) BS02 ERG ? GO:0005216 ... Q9XSM3 37735536
    804032 8fhi:B (3.25) BS03 ERG ? GO:0005216 ... Q9XSM3 37735536
    804033 8fhi:B (3.25) BS04 3VV ? GO:0005216 ... Q9XSM3 37735536
    804034 8fhi:C (3.25) BS01 ERG ? GO:0005216 ... Q9XSM3 37735536
    804035 8fhi:C (3.25) BS02 ERG ? GO:0005216 ... Q9XSM3 37735536
    804036 8fhi:C (3.25) BS03 ERG ? GO:0005216 ... Q9XSM3 37735536
    804037 8fhi:C (3.25) BS04 3VV ? GO:0005216 ... Q9XSM3 37735536
    804038 8fhi:D (3.25) BS01 ERG ? GO:0005216 ... Q9XSM3 37735536
    804039 8fhi:D (3.25) BS02 ERG ? GO:0005216 ... Q9XSM3 37735536
    804040 8fhi:D (3.25) BS03 ERG ? GO:0005216 ... Q9XSM3 37735536
    804041 8fhi:D (3.25) BS04 3VV ? GO:0005216 ... Q9XSM3 37735536
    804042 8fhj:A (2.61) BS01 FAD N/A GO:0016491 ... N/A 37158309
    804043 8fhj:B (2.61) BS01 FAD N/A GO:0016491 ... N/A 37158309
    804044 8fhj:C (2.61) BS01 FAD N/A GO:0016491 ... N/A 37158309
    804045 8fhk:C (2.9) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    804046 8fhk:C (2.9) BS02 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    804047 8fhk:D (2.9) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    804048 8fhk:D (2.9) BS02 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    804049 8fhl:A (2.194) BS01 peptide ? N/A P01900 N/A
    804050 8fhm:A (1.79) BS01 U6F 4.6.1.18 GO:0004519 ... P61823 39071052
    804051 8fhm:A (1.79) BS02 U6F 4.6.1.18 GO:0004519 ... P61823 39071052
    804052 8fhm:B (1.79) BS01 U6F 4.6.1.18 GO:0004519 ... P61823 39071052
    804053 8fhn:A (3.0) BS01 ATP ? GO:0006811 ... P55017 36792826
    804054 8fhn:A (3.0) BS02 XZF ? GO:0006811 ... P55017 36792826
    804055 8fhn:B (3.0) BS01 peptide ? GO:0006811 ... P55017 36792826
    804056 8fhn:B (3.0) BS02 ATP ? GO:0006811 ... P55017 36792826
    804057 8fhn:B (3.0) BS03 XZF ? GO:0006811 ... P55017 36792826
    804058 8fho:A (2.95) BS01 ATP ? GO:0006811 ... P55017 36792826
    804059 8fho:A (2.95) BS02 XZF ? GO:0006811 ... P55017 36792826
    804060 8fho:A (2.95) BS03 NA ? GO:0006811 ... P55017 36792826
    804061 8fho:B (2.95) BS01 peptide ? GO:0006811 ... P55017 36792826
    804062 8fho:B (2.95) BS02 ATP ? GO:0006811 ... P55017 36792826
    804063 8fho:B (2.95) BS03 XZF ? GO:0006811 ... P55017 36792826
    804064 8fho:B (2.95) BS04 NA ? GO:0006811 ... P55017 36792826
    804065 8fhp:A (3.04) BS01 XZF ? GO:0006811 ... A0A0G2KTI4
    P55017
    36792826
    804066 8fhp:A (3.04) BS02 NA ? GO:0006811 ... A0A0G2KTI4
    P55017
    36792826
    804067 8fhp:B (3.04) BS01 XZF ? GO:0006811 ... A0A0G2KTI4
    P55017
    36792826
    804068 8fhp:B (3.04) BS02 NA ? GO:0006811 ... A0A0G2KTI4
    P55017
    36792826
    804069 8fhq:A (2.81) BS01 XZF ? GO:0006811 ... A0A0G2KTI4
    P55017
    36792826
    804070 8fhq:A (2.81) BS02 NA ? GO:0006811 ... A0A0G2KTI4
    P55017
    36792826
    804071 8fhq:B (2.81) BS01 XZF ? GO:0006811 ... A0A0G2KTI4
    P55017
    36792826
    804072 8fhq:B (2.81) BS02 NA ? GO:0006811 ... A0A0G2KTI4
    P55017
    36792826
    804073 8fhr:A (2.9) BS01 XZF ? GO:0006811 ... A0A0G2KTI4
    P55017
    36792826
    804074 8fhr:A (2.9) BS02 NA ? GO:0006811 ... A0A0G2KTI4
    P55017
    36792826
    804075 8fhr:B (2.9) BS01 XZF ? GO:0006811 ... A0A0G2KTI4
    P55017
    36792826
    804076 8fhr:B (2.9) BS02 NA ? GO:0006811 ... A0A0G2KTI4
    P55017
    36792826
    804077 8fhs:A (3.3) BS01 CA ? GO:0002520 ... Q13936 37972591
    804078 8fhs:A (3.3) BS02 BBI ? GO:0002520 ... Q13936 37972591
    804079 8fhs:A (3.3) BS03 WG6 ? GO:0002520 ... Q13936 37972591
    804080 8fhs:A (3.3) BS04 CLR ? GO:0002520 ... Q13936 37972591
    804081 8fhs:A (3.3) BS05 CLR ? GO:0002520 ... Q13936 37972591
    804082 8fhs:A (3.3) BS06 CLR ? GO:0002520 ... Q13936 37972591
    804083 8fhs:A (3.3) BS07 CLR ? GO:0002520 ... Q13936 37972591
    804084 8fhs:D (3.3) BS01 CA ? N/A P54289 37972591
    804085 8fht:A (3.02) BS01 NA ? GO:0002021 ... P55017 36792826
    804086 8fht:A (3.02) BS02 CL ? GO:0002021 ... P55017 36792826
    804087 8fht:B (3.02) BS01 NA ? GO:0002021 ... P55017 36792826
    804088 8fht:B (3.02) BS02 CL ? GO:0002021 ... P55017 36792826
    804089 8fhu:A (1.801) BS01 peptide ? N/A P01900 N/A
    804090 8fhu:D (1.801) BS01 peptide ? N/A P01900 N/A
    804091 8fhw:A (3.2) BS01 UDP ? GO:0003824 ... J9VJZ1 36993618
    804092 8fhw:A (3.2) BS02 G6P ? GO:0003824 ... J9VJZ1 36993618
    804093 8fhw:B (3.2) BS01 UDP ? GO:0003824 ... J9VJZ1 36993618
    804094 8fhw:B (3.2) BS02 G6P ? GO:0003824 ... J9VJZ1 36993618
    804095 8fhw:C (3.2) BS01 UDP ? GO:0003824 ... J9VJZ1 36993618
    804096 8fhw:C (3.2) BS02 G6P ? GO:0003824 ... J9VJZ1 36993618
    804097 8fhw:D (3.2) BS01 UDP ? GO:0003824 ... J9VJZ1 36993618
    804098 8fhw:D (3.2) BS02 G6P ? GO:0003824 ... J9VJZ1 36993618
    804099 8fi3:A (2.9) BS01 BTN 6.3.4.15 GO:0003677 ... A0A0W7ZMT5 N/A
    804100 8fi3:B (2.9) BS01 BTN 6.3.4.15 GO:0003677 ... A0A0W7ZMT5 N/A
    804101 8fi4:A (1.8) BS01 MYA 2.3.1.97 GO:0004379 ... Q4Q5S8 N/A
    804102 8fi5:A (2.25) BS01 MYA 2.3.1.97 GO:0004379 ... Q4Q5S8 N/A
    804103 8fi6:A (1.8) BS01 MYA 2.3.1.97 GO:0004379 ... Q4Q5S8 N/A
    804104 8fia:A (2.4) BS01 FUC ? N/A O61307 37165720
    804105 8fib:A (1.68) BS01 HEM ? GO:0004497 ... A0A0M2KDV0 37339230
    804106 8fic:A (1.7) BS01 HEM ? GO:0004497 ... A0A0M2KDV0 37339230
    804107 8fic:A (1.7) BS02 NE4 ? GO:0004497 ... A0A0M2KDV0 37339230
    804108 8fid:A (1.83) BS01 HEM ? GO:0004497 ... A0A0M2KDV0 37339230
    804109 8fid:A (1.83) BS02 NE4 ? GO:0004497 ... A0A0M2KDV0 37339230
    804110 8fie:A (2.26) BS01 HEM ? GO:0004497 ... A0A0M2KDV0 37339230
    804111 8fif:A (2.35) BS01 peptide N/A N/A N/A N/A
    804112 8fif:B (2.35) BS01 peptide N/A N/A N/A N/A
    804113 8fif:C (2.35) BS01 peptide N/A N/A N/A N/A
    804114 8fig:A (1.75) BS01 UED 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37957287
    804115 8fii:A (2.94) BS01 dna 3.5.4.38 GO:0000932 ... P31941 37821454
    804116 8fii:A (2.94) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 37821454
    804117 8fii:B (2.94) BS01 dna 3.5.4.38 GO:0000932 ... P31941 37821454
    804118 8fii:B (2.94) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 37821454
    804119 8fij:A (2.799) BS01 dna 3.5.4.38 GO:0000932 ... P31941 37821454
    804120 8fij:A (2.799) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 37821454
    804121 8fij:B (2.799) BS01 dna 3.5.4.38 GO:0000932 ... P31941 37821454
    804122 8fij:B (2.799) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 37821454
    804123 8fik:A (1.912) BS01 dna 3.5.4.38 GO:0000932 ... P31941 37821454
    804124 8fik:A (1.912) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 37821454
    804125 8fik:A (1.912) BS03 IHP 3.5.4.38 GO:0000932 ... P31941 37821454
    804126 8fik:B (1.912) BS01 dna 3.5.4.38 GO:0000932 ... P31941 37821454
    804127 8fik:B (1.912) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 37821454
    804128 8fil:A (2.01) BS01 dna 3.5.4.38 GO:0000932 ... P31941 37821454
    804129 8fil:A (2.01) BS02 IHP 3.5.4.38 GO:0000932 ... P31941 37821454
    804130 8fil:B (2.01) BS01 dna 3.5.4.38 GO:0000932 ... P31941 37821454
    804131 8fil:B (2.01) BS02 IHP 3.5.4.38 GO:0000932 ... P31941 37821454
    804132 8fim:A (2.22) BS01 dna 3.5.4.38 GO:0000932 ... P31941 37821454
    804133 8fim:A (2.22) BS02 IHP 3.5.4.38 GO:0000932 ... P31941 37821454
    804134 8fim:A (2.22) BS03 ZN 3.5.4.38 GO:0000932 ... P31941 37821454
    804135 8fim:B (2.22) BS01 dna 3.5.4.38 GO:0000932 ... P31941 37821454
    804136 8fim:B (2.22) BS02 IHP 3.5.4.38 GO:0000932 ... P31941 37821454
    804137 8fim:B (2.22) BS03 ZN 3.5.4.38 GO:0000932 ... P31941 37821454
    804138 8fio:A (1.97) BS01 NAR ? GO:0000166 ... A0A1B6PND3 37762209
    804139 8fio:A (1.97) BS02 NAP ? GO:0000166 ... A0A1B6PND3 37762209
    804140 8fio:B (1.97) BS01 NAR ? GO:0000166 ... A0A1B6PND3 37762209
    804141 8fio:B (1.97) BS02 NAP ? GO:0000166 ... A0A1B6PND3 37762209
    804142 8fip:A (1.7) BS01 NAP ? GO:0000166 ... A0A1B6PND3 37762209
    804143 8fip:B (1.7) BS01 NAP ? GO:0000166 ... A0A1B6PND3 37762209
    804144 8fiq:A (2.66) BS01 peptide N/A N/A N/A 37590357
    804145 8fit:A (2.75) BS01 peptide N/A N/A N/A 37590357
    804146 8fit:C (2.75) BS01 peptide N/A N/A N/A 37590357
    804147 8fiu:A (1.56) BS01 Y05 ? GO:0016032 ... P12493 36719971
    804148 8fiu:A (1.56) BS02 Y05 ? GO:0016032 ... P12493 36719971
    804149 8fiu:B (1.56) BS01 Y05 ? GO:0016032 ... P12493 36719971
    804150 8fiu:C (1.56) BS01 Y05 ? GO:0016032 ... P12493 36719971
    804151 8fiv:A (2.51) BS01 Y0I 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37482021
    804152 8fiw:A (2.54) BS01 Y0E 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37482021
    804153 8fiw:B (2.54) BS01 Y0E 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37482021
    804154 8fiw:B (2.54) BS02 Y1E 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37482021
    804155 8fix:C (3.9) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 36931247
    804156 8fix:C (3.9) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 36931247
    804157 8fix:C (3.9) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 36931247
    804158 8fix:D (3.9) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 36931247
    804159 8fix:D (3.9) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 36931247
    804160 8fix:D (3.9) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36931247
    804161 8fix:D (3.9) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36931247
    804162 8fix:D (3.9) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 36931247
    804163 8fiy:C (7.3) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 36931247
    804164 8fiy:C (7.3) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 36931247
    804165 8fiy:C (7.3) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 36931247
    804166 8fiy:D (7.3) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 36931247
    804167 8fiy:D (7.3) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 36931247
    804168 8fiy:D (7.3) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 36931247
    804169 8fiy:D (7.3) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36931247
    804170 8fiy:D (7.3) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 36931247
    804171 8fiz:AB (3.8) BS01 rna ? GO:0000028 ... P0A7U7 36931247
    804172 8fiz:AC (3.8) BS01 rna ? GO:0000049 ... P0A7S3 36931247
    804173 8fiz:AD (3.8) BS01 rna ? GO:0000028 ... P0A7U3 36931247
    804174 8fiz:AE (3.8) BS01 rna ? GO:0000049 ... P0A7S9 36931247
    804175 8fiz:AF (3.8) BS01 rna ? GO:0000028 ... P0AG59 36931247
    804176 8fiz:AG (3.8) BS01 rna ? GO:0000028 ... P0A7V3 36931247
    804177 8fiz:AG (3.8) BS02 rna ? GO:0000028 ... P0A7V3 36931247
    804178 8fiz:AH (3.8) BS01 rna ? GO:0000049 ... P0A7R5 36931247
    804179 8fiz:AI (3.8) BS01 rna ? GO:0000028 ... P0A7V8 36931247
    804180 8fiz:AJ (3.8) BS01 rna ? GO:0000028 ... P0A7V0 36931247
    804181 8fiz:AK (3.8) BS01 rna ? GO:0000049 ... P0A7X3 36931247
    804182 8fiz:AK (3.8) BS02 rna ? GO:0000049 ... P0A7X3 36931247
    804183 8fiz:AL (3.8) BS01 rna ? GO:0000028 ... P02359 36931247
    804184 8fiz:AM (3.8) BS01 rna ? GO:0002181 ... P0A7R9 36931247
    804185 8fiz:AN (3.8) BS01 rna ? GO:0002181 ... P02358 36931247
    804186 8fiz:AO (3.8) BS01 rna ? GO:0000028 ... P0A7T3 36931247
    804187 8fiz:AP (3.8) BS01 rna ? GO:0000028 ... P0A7W1 36931247
    804188 8fiz:AP (3.8) BS02 rna ? GO:0000028 ... P0A7W1 36931247
    804189 8fiz:AQ (3.8) BS01 rna ? GO:0000028 ... P0A7W7 36931247
    804190 8fiz:AR (3.8) BS01 rna ? GO:0000028 ... P0ADZ4 36931247
    804191 8fiz:AR (3.8) BS02 rna ? GO:0000028 ... P0ADZ4 36931247
    804192 8fiz:AS (3.8) BS01 rna ? GO:0000028 ... P0AG63 36931247
    804193 8fiz:AT (3.8) BS01 rna ? GO:0002181 ... P0A7T7 36931247
    804194 8fiz:AU (3.8) BS01 rna ? GO:0000028 ... P68679 36931247
    804195 8fiz:AV (3.8) BS01 rna ? GO:0002181 ... P0A7M9 36931247
    804196 8fiz:BD (3.8) BS01 rna ? GO:0000027 ... P60422 36931247
    804197 8fiz:BE (3.8) BS01 rna ? GO:0000027 ... P60438 36931247
    804198 8fiz:BF (3.8) BS01 rna ? GO:0001070 ... P60723 36931247
    804199 8fiz:BG (3.8) BS01 rna ? GO:0000027 ... P62399 36931247
    804200 8fiz:BG (3.8) BS02 rna ? GO:0000027 ... P62399 36931247

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).