SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    804201 8fiz:BG (3.8) BS03 rna ? GO:0000027 ... P62399 36931247
    804202 8fiz:BH (3.8) BS01 rna ? GO:0002181 ... P0C018 36931247
    804203 8fiz:BH (3.8) BS02 rna ? GO:0002181 ... P0C018 36931247
    804204 8fiz:BI (3.8) BS01 rna ? GO:0000027 ... P0A7N9 36931247
    804205 8fiz:BJ (3.8) BS01 rna ? GO:0000027 ... P0AG55 36931247
    804206 8fiz:BK (3.8) BS01 rna ? GO:0002181 ... P0A7R1 36931247
    804207 8fiz:BL (3.8) BS01 rna ? GO:0000027 ... P0A7J7 36931247
    804208 8fiz:BM (3.8) BS01 rna ? GO:0000027 ... P0A7N4 36931247
    804209 8fiz:BN (3.8) BS01 rna ? GO:0002181 ... P0A7P5 36931247
    804210 8fiz:BO (3.8) BS01 rna ? GO:0002181 ... P0A7Q1 36931247
    804211 8fiz:BP (3.8) BS01 rna ? GO:0002181 ... P0A7Q6 36931247
    804212 8fiz:BQ (3.8) BS01 rna ? GO:0000027 ... P0AG51 36931247
    804213 8fiz:BR (3.8) BS01 rna ? GO:0002181 ... P0AA10 36931247
    804214 8fiz:BS (3.8) BS01 rna ? GO:0002181 ... P0ADY3 36931247
    804215 8fiz:BS (3.8) BS02 rna ? GO:0002181 ... P0ADY3 36931247
    804216 8fiz:BT (3.8) BS01 rna ? GO:0002181 ... P02413 36931247
    804217 8fiz:BU (3.8) BS01 rna ? GO:0000027 ... P0ADY7 36931247
    804218 8fiz:BV (3.8) BS01 rna ? GO:0000027 ... P0AG44 36931247
    804219 8fiz:BW (3.8) BS01 rna ? GO:0000027 ... P0A7K6 36931247
    804220 8fiz:BW (3.8) BS02 rna ? GO:0000027 ... P0A7K6 36931247
    804221 8fiz:BX (3.8) BS01 rna ? GO:0000027 ... P0A7L3 36931247
    804222 8fiz:BY (3.8) BS01 rna ? GO:0002181 ... P0AG48 36931247
    804223 8fiz:BZ (3.8) BS01 rna ? GO:0002181 ... P61175 36931247
    804224 8fiz:DA (3.8) BS01 rna ? GO:0000027 ... P0ADZ0 36931247
    804225 8fiz:DB (3.8) BS01 rna ? GO:0000027 ... P60624 36931247
    804226 8fiz:DC (3.8) BS01 rna ? GO:0000027 ... P68919 36931247
    804227 8fiz:DD (3.8) BS01 rna ? GO:0000027 ... P0A7L8 36931247
    804228 8fiz:DD (3.8) BS02 rna ? GO:0000027 ... P0A7L8 36931247
    804229 8fiz:DE (3.8) BS01 rna ? GO:0000027 ... P0A7M2 36931247
    804230 8fiz:DF (3.8) BS01 rna ? GO:0000027 ... P0A7M6 36931247
    804231 8fiz:DG (3.8) BS01 rna ? GO:0002181 ... P0A7J3 36931247
    804232 8fj4:A (2.76) BS01 XZU N/A GO:0000122 ... O60341 N/A
    804233 8fj4:A (2.76) BS02 XZU N/A GO:0000122 ... O60341 N/A
    804234 8fj4:A (2.76) BS03 XZU N/A GO:0000122 ... O60341 N/A
    804235 8fj4:A (2.76) BS04 XZQ N/A GO:0000122 ... O60341 N/A
    804236 8fj6:A () BS01 Y0Z N/A N/A N/A N/A
    804237 8fj7:A (2.8) BS01 peptide N/A GO:0000122 ... O60341 N/A
    804238 8fj7:A (2.8) BS02 Y0Z N/A GO:0000122 ... O60341 N/A
    804239 8fj8:A (2.17) BS01 CA ? GO:0005509 ... P02638 N/A
    804240 8fj8:A (2.17) BS02 CA ? GO:0005509 ... P02638 N/A
    804241 8fj9:A (2.5) BS01 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    804242 8fj9:B (2.5) BS01 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    804243 8fja:A (3.0) BS01 peptide ? N/A Q861F7 N/A
    804244 8fja:D (3.0) BS01 peptide N/A N/A N/A N/A
    804245 8fja:E (3.0) BS01 peptide N/A N/A N/A N/A
    804246 8fjb:A (3.06) BS01 peptide ? N/A Q861F7 N/A
    804247 8fjb:E (3.06) BS01 peptide N/A N/A N/A N/A
    804248 8fjc:A (2.5) BS01 GLC 2.4.1.5 GO:0009250 ... P08987 37158310
    804249 8fjc:A (2.5) BS02 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    804250 8fjc:A (2.5) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    804251 8fjc:B (2.5) BS01 GLC 2.4.1.5 GO:0009250 ... P08987 37158310
    804252 8fjc:B (2.5) BS02 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    804253 8fjc:B (2.5) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    804254 8fjd:A (4.46) BS01 CA ? GO:0015996 ... A0A3B6QC98 36731794
    804255 8fjd:B (4.46) BS01 CA ? GO:0015996 ... A0A3B6QC98 36731794
    804256 8fjh:B (1.54) BS01 GDP 3.6.5.2 GO:0003924 ... P11233 37269475
    804257 8fjh:B (1.54) BS02 Y0P 3.6.5.2 GO:0003924 ... P11233 37269475
    804258 8fjh:B (1.54) BS03 CA 3.6.5.2 GO:0003924 ... P11233 37269475
    804259 8fji:B (1.48) BS01 GDP 3.6.5.2 GO:0003924 ... P11233 37269475
    804260 8fji:B (1.48) BS02 Y0M 3.6.5.2 GO:0003924 ... P11233 37269475
    804261 8fji:B (1.48) BS03 CA 3.6.5.2 GO:0003924 ... P11233 37269475
    804262 8fjk:E (3.3) BS01 ZN 3.6.4.13 GO:0003724 ... Q8JU60 36856784
    804263 8fjk:G (3.3) BS01 ZN 3.6.4.13 GO:0003724 ... Q8JU60 36856784
    804264 8fjk:I (3.3) BS01 ZN 3.6.4.13 GO:0003724 ... Q8JU60 36856784
    804265 8fjk:K (3.3) BS01 ZN 3.6.4.13 GO:0003724 ... Q8JU60 36856784
    804266 8fjl:D (3.27) BS01 rna 3.6.4.13 GO:0003724 ... Q8JU60 36856784
    804267 8fjl:E (3.27) BS01 ZN 3.6.4.13 GO:0003724 ... Q8JU60 36856784
    804268 8fjl:G (3.27) BS01 ZN 3.6.4.13 GO:0003724 ... Q8JU60 36856784
    804269 8fjl:I (3.27) BS01 ZN 3.6.4.13 GO:0003724 ... Q8JU60 36856784
    804270 8fjl:K (3.27) BS01 ZN 3.6.4.13 GO:0003724 ... Q8JU60 36856784
    804271 8fjm:A (1.9) BS01 SAH 2.1.1.360 GO:0031151 ... Q581Z0 38503750
    804272 8fjm:A (1.9) BS02 ZN 2.1.1.360 GO:0031151 ... Q581Z0 38503750
    804273 8fjm:A (1.9) BS03 CA 2.1.1.360 GO:0031151 ... Q581Z0 38503750
    804274 8fjm:B (1.9) BS01 SAH 2.1.1.360 GO:0031151 ... Q581Z0 38503750
    804275 8fjm:B (1.9) BS02 ZN 2.1.1.360 GO:0031151 ... Q581Z0 38503750
    804276 8fjm:B (1.9) BS03 CA 2.1.1.360 GO:0031151 ... Q581Z0 38503750
    804277 8fjn:A (2.1) BS01 SAH 2.1.1.360 GO:0031151 ... Q581Z0 38503750
    804278 8fjn:A (2.1) BS02 ZN 2.1.1.360 GO:0031151 ... Q581Z0 38503750
    804279 8fjn:A (2.1) BS03 CA 2.1.1.360 GO:0031151 ... Q581Z0 38503750
    804280 8fjo:A (1.69) BS01 HEM ? GO:0004497 ... B2HHT9 36842492
    804281 8fjo:A (1.69) BS02 Y7R ? GO:0004497 ... B2HHT9 36842492
    804282 8fjo:A (1.69) BS03 SO4 ? GO:0004497 ... B2HHT9 36842492
    804283 8fjo:A (1.69) BS04 SO4 ? GO:0004497 ... B2HHT9 36842492
    804284 8fjq:A (1.62) BS01 HEM ? GO:0004601 ... D1A807 N/A
    804285 8fjq:B (1.62) BS01 HEM ? GO:0004601 ... D1A807 N/A
    804286 8fjr:A (1.49) BS01 HEM ? GO:0004601 ... D1A807 N/A
    804287 8fjr:B (1.49) BS01 HEM ? GO:0004601 ... D1A807 N/A
    804288 8fjt:A (2.47) BS01 PLG 2.1.2.1 GO:0002082 ... P34897 37582241
    804289 8fjt:A (2.47) BS02 Y72 2.1.2.1 GO:0002082 ... P34897 37582241
    804290 8fjt:A (2.47) BS03 Y72 2.1.2.1 GO:0002082 ... P34897 37582241
    804291 8fjt:A (2.47) BS04 GLY 2.1.2.1 GO:0002082 ... P34897 37582241
    804292 8fjt:A (2.47) BS05 PLP 2.1.2.1 GO:0002082 ... P34897 37582241
    804293 8fjt:B (2.47) BS01 PLG 2.1.2.1 GO:0002082 ... P34897 37582241
    804294 8fjt:B (2.47) BS02 Y72 2.1.2.1 GO:0002082 ... P34897 37582241
    804295 8fjt:B (2.47) BS03 Y72 2.1.2.1 GO:0002082 ... P34897 37582241
    804296 8fjt:B (2.47) BS04 GLY 2.1.2.1 GO:0002082 ... P34897 37582241
    804297 8fjt:B (2.47) BS05 PLP 2.1.2.1 GO:0002082 ... P34897 37582241
    804298 8fju:A (2.51) BS01 PLG 2.1.2.1 GO:0002082 ... P34897 37582241
    804299 8fju:A (2.51) BS02 Y79 2.1.2.1 GO:0002082 ... P34897 37582241
    804300 8fju:A (2.51) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 37582241
    804301 8fju:A (2.51) BS04 Y79 2.1.2.1 GO:0002082 ... P34897 37582241
    804302 8fju:B (2.51) BS01 PLG 2.1.2.1 GO:0002082 ... P34897 37582241
    804303 8fju:B (2.51) BS02 Y79 2.1.2.1 GO:0002082 ... P34897 37582241
    804304 8fju:B (2.51) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 37582241
    804305 8fju:B (2.51) BS04 Y79 2.1.2.1 GO:0002082 ... P34897 37582241
    804306 8fjv:A (2.69) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13
    GO:0004644 ... P22102 37582241
    804307 8fjv:A (2.69) BS02 Y72 2.1.2.2
    6.3.3.1
    6.3.4.13
    GO:0004644 ... P22102 37582241
    804308 8fjw:A (2.08) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13
    GO:0004644 ... P22102 37582241
    804309 8fjw:A (2.08) BS02 Y79 2.1.2.2
    6.3.3.1
    6.3.4.13
    GO:0004644 ... P22102 37582241
    804310 8fjx:A (2.17) BS01 Y7L 2.1.2.2
    6.3.3.1
    6.3.4.13
    GO:0004644 ... P22102 37582241
    804311 8fjx:A (2.17) BS02 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13
    GO:0004644 ... P22102 37582241
    804312 8fjy:A (2.98) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13
    GO:0004644 ... P22102 37582241
    804313 8fjy:A (2.98) BS02 Y6U 2.1.2.2
    6.3.3.1
    6.3.4.13
    GO:0004644 ... P22102 37582241
    804314 8fjz:A (1.897) BS01 Y3I 2.7.11.1 GO:0004672 ... Q92918 36940470
    804315 8fjz:B (1.897) BS01 Y3I 2.7.11.1 GO:0004672 ... Q92918 36940470
    804316 8fjz:C (1.897) BS01 Y3I 2.7.11.1 GO:0004672 ... Q92918 36940470
    804317 8fjz:D (1.897) BS01 Y3I 2.7.11.1 GO:0004672 ... Q92918 36940470
    804318 8fjz:E (1.897) BS01 Y3I 2.7.11.1 GO:0004672 ... Q92918 36940470
    804319 8fjz:F (1.897) BS01 Y3I 2.7.11.1 GO:0004672 ... Q92918 36940470
    804320 8fk3:A (2.6) BS01 peptide ? GO:0005737 ... P52293 36851528
    804321 8fk4:A (3.25) BS01 GLC 2.4.1.5 GO:0009250 ... P08987 37158310
    804322 8fk4:A (3.25) BS02 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    804323 8fk4:A (3.25) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    804324 8fk4:B (3.25) BS01 GLC 2.4.1.5 GO:0009250 ... P08987 37158310
    804325 8fk4:B (3.25) BS02 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    804326 8fk4:B (3.25) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    804327 8fk4:C (3.25) BS01 GLC 2.4.1.5 GO:0009250 ... P08987 37158310
    804328 8fk4:C (3.25) BS02 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    804329 8fk4:C (3.25) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    804330 8fk4:D (3.25) BS01 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    804331 8fk4:D (3.25) BS02 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    804332 8fk4:E (3.25) BS01 GLC 2.4.1.5 GO:0009250 ... P08987 37158310
    804333 8fk4:E (3.25) BS02 GLC 2.4.1.5 GO:0009250 ... P08987 37158310
    804334 8fk4:E (3.25) BS03 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    804335 8fk4:E (3.25) BS04 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    804336 8fk4:F (3.25) BS01 GLC 2.4.1.5 GO:0009250 ... P08987 37158310
    804337 8fk4:F (3.25) BS02 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    804338 8fk4:F (3.25) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    804339 8fk4:G (3.25) BS01 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    804340 8fk4:G (3.25) BS02 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    804341 8fk4:H (3.25) BS01 GLC 2.4.1.5 GO:0009250 ... P08987 37158310
    804342 8fk4:H (3.25) BS02 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    804343 8fk4:H (3.25) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    804344 8fk5:L (3.4) BS01 MAN ? GO:0005576 ... Q6PJG0 37436900
    804345 8fkb:A (1.42) BS01 FOF ? GO:0004497 ... B2HHT9 36842492
    804346 8fkb:A (1.42) BS02 HEM ? GO:0004497 ... B2HHT9 36842492
    804347 8fkb:A (1.42) BS03 SO4 ? GO:0004497 ... B2HHT9 36842492
    804348 8fkb:A (1.42) BS04 SO4 ? GO:0004497 ... B2HHT9 36842492
    804349 8fkb:A (1.42) BS05 SO4 ? GO:0004497 ... B2HHT9 36842492
    804350 8fkc:A (1.42) BS01 peptide ? GO:0003677 ... P37231 N/A
    804351 8fkc:A (1.42) BS02 Y5F ? GO:0003677 ... P37231 N/A
    804352 8fkd:A (2.22) BS01 peptide ? GO:0003677 ... P37231 N/A
    804353 8fkd:A (2.22) BS02 Y5O ? GO:0003677 ... P37231 N/A
    804354 8fke:A (2.02) BS01 peptide ? GO:0003677 ... P37231 N/A
    804355 8fke:A (2.02) BS02 Y5T ? GO:0003677 ... P37231 N/A
    804356 8fkf:A (1.82) BS01 peptide ? GO:0003677 ... P37231 N/A
    804357 8fkf:A (1.82) BS02 Y5X ? GO:0003677 ... P37231 N/A
    804358 8fkg:A (2.12) BS01 peptide ? GO:0003677 ... P37231 N/A
    804359 8fkg:A (2.12) BS02 Y62 ? GO:0003677 ... P37231 N/A
    804360 8fko:A (2.104) BS01 Y3O 2.7.11.1 GO:0004672 ... Q92918 36940470
    804361 8fko:B (2.104) BS01 Y3O 2.7.11.1 GO:0004672 ... Q92918 36940470
    804362 8fko:C (2.104) BS01 Y3O 2.7.11.1 GO:0004672 ... Q92918 36940470
    804363 8fko:D (2.104) BS01 Y3O 2.7.11.1 GO:0004672 ... Q92918 36940470
    804364 8fko:E (2.104) BS01 Y3O 2.7.11.1 GO:0004672 ... Q92918 36940470
    804365 8fkp:L6 (2.85) BS01 rna ? GO:0001824 ... P26373 37410842
    804366 8fkp:L6 (2.85) BS02 rna ? GO:0001824 ... P26373 37410842
    804367 8fkp:L7 (2.85) BS01 rna ? GO:0002181 ... P40429 37410842
    804368 8fkp:L8 (2.85) BS01 rna ? GO:0002181 ... P50914 37410842
    804369 8fkp:L9 (2.85) BS01 rna ? GO:0002181 ... P61313 37410842
    804370 8fkp:L9 (2.85) BS02 rna ? GO:0002181 ... P61313 37410842
    804371 8fkp:L9 (2.85) BS03 MG ? GO:0002181 ... P61313 37410842
    804372 8fkp:LA (2.85) BS01 rna ? GO:0002181 ... P18621 37410842
    804373 8fkp:LA (2.85) BS02 rna ? GO:0002181 ... P18621 37410842
    804374 8fkp:LB (2.85) BS01 rna ? GO:0002181 ... Q07020 37410842
    804375 8fkp:LC (2.85) BS01 rna ? GO:0002181 ... Q02543 37410842
    804376 8fkp:LE (2.85) BS01 rna ? GO:0002181 ... P46778 37410842
    804377 8fkp:LI (2.85) BS01 rna ? GO:0002181 ... P61254 37410842
    804378 8fkp:LI (2.85) BS02 rna ? GO:0002181 ... P61254 37410842
    804379 8fkp:LK (2.85) BS01 rna ? GO:0002181 ... P46776 37410842
    804380 8fkp:LN (2.85) BS01 rna ? GO:0002181 ... P39023 37410842
    804381 8fkp:LQ (2.85) BS01 rna ? GO:0002181 ... P62910 37410842
    804382 8fkp:LQ (2.85) BS02 MG ? GO:0002181 ... P62910 37410842
    804383 8fkp:LS (2.85) BS01 rna ? GO:0000463 ... P42766 37410842
    804384 8fkp:LS (2.85) BS02 rna ? GO:0000463 ... P42766 37410842
    804385 8fkp:LT (2.85) BS01 rna ? GO:0000049 ... P18077 37410842
    804386 8fkp:LT (2.85) BS02 MG ? GO:0000049 ... P18077 37410842
    804387 8fkp:LU (2.85) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    804388 8fkp:LW (2.85) BS01 rna ? GO:0002181 ... P61927 37410842
    804389 8fkp:LW (2.85) BS02 rna ? GO:0002181 ... P61927 37410842
    804390 8fkp:LW (2.85) BS03 ZN ? GO:0002181 ... P61927 37410842
    804391 8fkp:NB (2.85) BS01 rna ? GO:0003723 ... Q9BVP2 37410842
    804392 8fkp:NE (2.85) BS01 rna ? GO:0001652 ... O75683 37410842
    804393 8fkp:NG (2.85) BS01 rna ? GO:0000460 ... Q9Y3B9 37410842
    804394 8fkp:NM (2.85) BS01 rna ? GO:0000460 ... Q9BXY0 37410842
    804395 8fkp:NM (2.85) BS02 SF4 ? GO:0000460 ... Q9BXY0 37410842
    804396 8fkp:NN (2.85) BS01 rna ? GO:0000463 ... Q9NQ55 37410842
    804397 8fkp:NO (2.85) BS01 rna ? GO:0003723 ... P56182 37410842
    804398 8fkp:NQ (2.85) BS01 rna ? GO:0000176 ... Q6RFH5 37410842
    804399 8fkp:NS (2.85) BS01 rna ? GO:0000460 ... Q9H9Y2 37410842
    804400 8fkp:NS (2.85) BS02 rna ? GO:0000460 ... Q9H9Y2 37410842

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).