SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    804401 8fkp:SA (2.85) BS01 rna ? GO:0002181 ... P36578 37410842
    804402 8fkp:SA (2.85) BS02 rna ? GO:0002181 ... P36578 37410842
    804403 8fkp:SC (2.85) BS01 rna ? GO:0002181 ... Q02878 37410842
    804404 8fkp:SD (2.85) BS01 rna ? GO:0000463 ... P18124 37410842
    804405 8fkp:SE (2.85) BS01 rna ? GO:0000470 ... P62424 37410842
    804406 8fkp:SE (2.85) BS02 rna ? GO:0000470 ... P62424 37410842
    804407 8fkp:SH (2.85) BS01 rna ? GO:0000794 ... Q9BYG3 37410842
    804408 8fkp:SH (2.85) BS02 peptide ? GO:0000794 ... Q9BYG3 37410842
    804409 8fkp:SI (2.85) BS01 rna ? GO:0000463 ... Q6DKI1 37410842
    804410 8fkp:SJ (2.85) BS01 rna 2.1.1.- GO:0000463 ... Q8IY81 37410842
    804411 8fkp:SK (2.85) BS01 rna ? GO:0000054 ... P56537 37410842
    804412 8fkp:SL (2.85) BS01 rna ? GO:0001649 ... O76021 37410842
    804413 8fkp:SM (2.85) BS01 rna ? GO:0000463 ... O00541 37410842
    804414 8fkp:SM (2.85) BS02 rna ? GO:0000463 ... O00541 37410842
    804415 8fkp:SN (2.85) BS01 rna ? GO:0003723 ... Q99848 37410842
    804416 8fkp:SO (2.85) BS01 rna ? GO:0000027 ... Q8TDN6 37410842
    804417 8fkp:SS (2.85) BS01 rna ? GO:0000027 ... Q14137 37410842
    804418 8fkp:SV (2.85) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    804419 8fkp:SV (2.85) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    804420 8fkp:SW (2.85) BS01 rna 3.6.4.13 GO:0000463 ... Q9NVP1 37410842
    804421 8fkp:SZ (2.85) BS01 rna ? GO:0003723 ... Q9Y3C1 37410842
    804422 8fkp:SZ (2.85) BS02 rna ? GO:0003723 ... Q9Y3C1 37410842
    804423 8fkq:L6 (2.76) BS01 rna ? GO:0001824 ... P26373 37410842
    804424 8fkq:L6 (2.76) BS02 rna ? GO:0001824 ... P26373 37410842
    804425 8fkq:L7 (2.76) BS01 rna ? GO:0002181 ... P40429 37410842
    804426 8fkq:L8 (2.76) BS01 rna ? GO:0002181 ... P50914 37410842
    804427 8fkq:L9 (2.76) BS01 rna ? GO:0002181 ... P61313 37410842
    804428 8fkq:L9 (2.76) BS02 rna ? GO:0002181 ... P61313 37410842
    804429 8fkq:L9 (2.76) BS03 MG ? GO:0002181 ... P61313 37410842
    804430 8fkq:LA (2.76) BS01 rna ? GO:0002181 ... P18621 37410842
    804431 8fkq:LA (2.76) BS02 rna ? GO:0002181 ... P18621 37410842
    804432 8fkq:LB (2.76) BS01 rna ? GO:0002181 ... Q07020 37410842
    804433 8fkq:LC (2.76) BS01 rna ? GO:0002181 ... Q02543 37410842
    804434 8fkq:LE (2.76) BS01 rna ? GO:0002181 ... P46778 37410842
    804435 8fkq:LI (2.76) BS01 rna ? GO:0002181 ... P61254 37410842
    804436 8fkq:LI (2.76) BS02 rna ? GO:0002181 ... P61254 37410842
    804437 8fkq:LK (2.76) BS01 rna ? GO:0002181 ... P46776 37410842
    804438 8fkq:LL (2.76) BS01 rna ? GO:0002181 ... P46779 37410842
    804439 8fkq:LN (2.76) BS01 rna ? GO:0002181 ... P39023 37410842
    804440 8fkq:LQ (2.76) BS01 rna ? GO:0002181 ... P62910 37410842
    804441 8fkq:LQ (2.76) BS02 MG ? GO:0002181 ... P62910 37410842
    804442 8fkq:LS (2.76) BS01 rna ? GO:0000463 ... P42766 37410842
    804443 8fkq:LS (2.76) BS02 rna ? GO:0000463 ... P42766 37410842
    804444 8fkq:LT (2.76) BS01 rna ? GO:0000049 ... P18077 37410842
    804445 8fkq:LT (2.76) BS02 MG ? GO:0000049 ... P18077 37410842
    804446 8fkq:LU (2.76) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    804447 8fkq:LW (2.76) BS01 rna ? GO:0002181 ... P61927 37410842
    804448 8fkq:LW (2.76) BS02 rna ? GO:0002181 ... P61927 37410842
    804449 8fkq:LW (2.76) BS03 ZN ? GO:0002181 ... P61927 37410842
    804450 8fkq:NE (2.76) BS01 rna ? GO:0001652 ... O75683 37410842
    804451 8fkq:NG (2.76) BS01 rna ? GO:0000460 ... Q9Y3B9 37410842
    804452 8fkq:NN (2.76) BS01 rna ? GO:0000463 ... Q9NQ55 37410842
    804453 8fkq:SA (2.76) BS01 rna ? GO:0002181 ... P36578 37410842
    804454 8fkq:SA (2.76) BS02 rna ? GO:0002181 ... P36578 37410842
    804455 8fkq:SC (2.76) BS01 rna ? GO:0002181 ... Q02878 37410842
    804456 8fkq:SD (2.76) BS01 rna ? GO:0000463 ... P18124 37410842
    804457 8fkq:SE (2.76) BS01 rna ? GO:0000470 ... P62424 37410842
    804458 8fkq:SE (2.76) BS02 rna ? GO:0000470 ... P62424 37410842
    804459 8fkq:SE (2.76) BS03 rna ? GO:0000470 ... P62424 37410842
    804460 8fkq:SH (2.76) BS01 rna ? GO:0000794 ... Q9BYG3 37410842
    804461 8fkq:SH (2.76) BS02 peptide ? GO:0000794 ... Q9BYG3 37410842
    804462 8fkq:SI (2.76) BS01 rna ? GO:0000463 ... Q6DKI1 37410842
    804463 8fkq:SI (2.76) BS02 peptide ? GO:0000463 ... Q6DKI1 37410842
    804464 8fkq:SJ (2.76) BS01 rna 2.1.1.- GO:0000463 ... Q8IY81 37410842
    804465 8fkq:SK (2.76) BS01 rna ? GO:0000054 ... P56537 37410842
    804466 8fkq:SL (2.76) BS01 rna ? GO:0001649 ... O76021 37410842
    804467 8fkq:SM (2.76) BS01 rna ? GO:0000463 ... O00541 37410842
    804468 8fkq:SM (2.76) BS02 rna ? GO:0000463 ... O00541 37410842
    804469 8fkq:SN (2.76) BS01 rna ? GO:0003723 ... Q99848 37410842
    804470 8fkq:SO (2.76) BS01 rna ? GO:0000027 ... Q8TDN6 37410842
    804471 8fkq:SS (2.76) BS01 rna ? GO:0000027 ... Q14137 37410842
    804472 8fkq:SV (2.76) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    804473 8fkq:SV (2.76) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    804474 8fkq:SW (2.76) BS01 rna 3.6.4.13 GO:0000463 ... Q9NVP1 37410842
    804475 8fkq:SZ (2.76) BS01 rna ? GO:0003723 ... Q9Y3C1 37410842
    804476 8fkq:SZ (2.76) BS02 rna ? GO:0003723 ... Q9Y3C1 37410842
    804477 8fkr:BA (2.89) BS01 rna ? GO:0002181 ... P30050 37410842
    804478 8fkr:L6 (2.89) BS01 rna ? GO:0001824 ... P26373 37410842
    804479 8fkr:L6 (2.89) BS02 rna ? GO:0001824 ... P26373 37410842
    804480 8fkr:L7 (2.89) BS01 rna ? GO:0002181 ... P40429 37410842
    804481 8fkr:L8 (2.89) BS01 rna ? GO:0002181 ... P50914 37410842
    804482 8fkr:L9 (2.89) BS01 rna ? GO:0002181 ... P61313 37410842
    804483 8fkr:L9 (2.89) BS02 rna ? GO:0002181 ... P61313 37410842
    804484 8fkr:L9 (2.89) BS03 MG ? GO:0002181 ... P61313 37410842
    804485 8fkr:LA (2.89) BS01 rna ? GO:0002181 ... P18621 37410842
    804486 8fkr:LA (2.89) BS02 rna ? GO:0002181 ... P18621 37410842
    804487 8fkr:LB (2.89) BS01 rna ? GO:0002181 ... Q07020 37410842
    804488 8fkr:LC (2.89) BS01 rna ? GO:0002181 ... Q02543 37410842
    804489 8fkr:LE (2.89) BS01 rna ? GO:0002181 ... P46778 37410842
    804490 8fkr:LH (2.89) BS01 rna ? GO:0002181 ... P62750 37410842
    804491 8fkr:LH (2.89) BS02 rna ? GO:0002181 ... P62750 37410842
    804492 8fkr:LI (2.89) BS01 rna ? GO:0002181 ... P61254 37410842
    804493 8fkr:LI (2.89) BS02 rna ? GO:0002181 ... P61254 37410842
    804494 8fkr:LK (2.89) BS01 rna ? GO:0002181 ... P46776 37410842
    804495 8fkr:LN (2.89) BS01 rna ? GO:0002181 ... P39023 37410842
    804496 8fkr:LQ (2.89) BS01 rna ? GO:0002181 ... P62910 37410842
    804497 8fkr:LS (2.89) BS01 rna ? GO:0000463 ... P42766 37410842
    804498 8fkr:LS (2.89) BS02 rna ? GO:0000463 ... P42766 37410842
    804499 8fkr:LT (2.89) BS01 rna ? GO:0000049 ... P18077 37410842
    804500 8fkr:LT (2.89) BS02 MG ? GO:0000049 ... P18077 37410842
    804501 8fkr:LU (2.89) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    804502 8fkr:LW (2.89) BS01 rna ? GO:0002181 ... P61927 37410842
    804503 8fkr:LW (2.89) BS02 rna ? GO:0002181 ... P61927 37410842
    804504 8fkr:LW (2.89) BS03 ZN ? GO:0002181 ... P61927 37410842
    804505 8fkr:NE (2.89) BS01 rna ? GO:0001652 ... O75683 37410842
    804506 8fkr:NF (2.89) BS01 rna ? GO:0000460 ... O95478 37410842
    804507 8fkr:NG (2.89) BS01 rna ? GO:0000460 ... Q9Y3B9 37410842
    804508 8fkr:NM (2.89) BS01 rna ? GO:0000460 ... Q9BXY0 37410842
    804509 8fkr:NM (2.89) BS02 SF4 ? GO:0000460 ... Q9BXY0 37410842
    804510 8fkr:NN (2.89) BS01 rna ? GO:0000463 ... Q9NQ55 37410842
    804511 8fkr:NO (2.89) BS01 rna ? GO:0003723 ... P56182 37410842
    804512 8fkr:NQ (2.89) BS01 rna ? GO:0000176 ... Q6RFH5 37410842
    804513 8fkr:NS (2.89) BS01 rna ? GO:0000460 ... Q9H9Y2 37410842
    804514 8fkr:NS (2.89) BS02 rna ? GO:0000460 ... Q9H9Y2 37410842
    804515 8fkr:SA (2.89) BS01 rna ? GO:0002181 ... P36578 37410842
    804516 8fkr:SA (2.89) BS02 rna ? GO:0002181 ... P36578 37410842
    804517 8fkr:SC (2.89) BS01 rna ? GO:0002181 ... Q02878 37410842
    804518 8fkr:SD (2.89) BS01 rna ? GO:0000463 ... P18124 37410842
    804519 8fkr:SE (2.89) BS01 rna ? GO:0000470 ... P62424 37410842
    804520 8fkr:SE (2.89) BS02 rna ? GO:0000470 ... P62424 37410842
    804521 8fkr:SG (2.89) BS01 rna ? GO:0002181 ... P32969 37410842
    804522 8fkr:SH (2.89) BS01 rna ? GO:0000794 ... Q9BYG3 37410842
    804523 8fkr:SI (2.89) BS01 rna ? GO:0000463 ... Q6DKI1 37410842
    804524 8fkr:SK (2.89) BS01 rna ? GO:0000054 ... P56537 37410842
    804525 8fkr:SL (2.89) BS01 rna ? GO:0001649 ... O76021 37410842
    804526 8fkr:SM (2.89) BS01 rna ? GO:0000463 ... O00541 37410842
    804527 8fkr:SM (2.89) BS02 rna ? GO:0000463 ... O00541 37410842
    804528 8fkr:SN (2.89) BS01 rna ? GO:0003723 ... Q99848 37410842
    804529 8fkr:SO (2.89) BS01 rna ? GO:0000027 ... Q8TDN6 37410842
    804530 8fkr:SQ (2.89) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    804531 8fkr:SR (2.89) BS01 rna ? GO:0000079 ... Q9BZE4 37410842
    804532 8fkr:SR (2.89) BS02 GDP ? GO:0000079 ... Q9BZE4 37410842
    804533 8fkr:SS (2.89) BS01 rna ? GO:0000027 ... Q14137 37410842
    804534 8fkr:SV (2.89) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    804535 8fkr:SV (2.89) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    804536 8fkr:SW (2.89) BS01 rna 3.6.4.13 GO:0000463 ... Q9NVP1 37410842
    804537 8fkr:SZ (2.89) BS01 rna ? GO:0003723 ... Q9Y3C1 37410842
    804538 8fks:BA (2.88) BS01 rna ? GO:0002181 ... P30050 37410842
    804539 8fks:L6 (2.88) BS01 rna ? GO:0001824 ... P26373 37410842
    804540 8fks:L6 (2.88) BS02 rna ? GO:0001824 ... P26373 37410842
    804541 8fks:L7 (2.88) BS01 rna ? GO:0002181 ... P40429 37410842
    804542 8fks:L8 (2.88) BS01 rna ? GO:0002181 ... P50914 37410842
    804543 8fks:L9 (2.88) BS01 rna ? GO:0002181 ... P61313 37410842
    804544 8fks:L9 (2.88) BS02 rna ? GO:0002181 ... P61313 37410842
    804545 8fks:L9 (2.88) BS03 MG ? GO:0002181 ... P61313 37410842
    804546 8fks:LA (2.88) BS01 rna ? GO:0002181 ... P18621 37410842
    804547 8fks:LA (2.88) BS02 rna ? GO:0002181 ... P18621 37410842
    804548 8fks:LB (2.88) BS01 rna ? GO:0002181 ... Q07020 37410842
    804549 8fks:LC (2.88) BS01 rna ? GO:0002181 ... Q02543 37410842
    804550 8fks:LE (2.88) BS01 rna ? GO:0002181 ... P46778 37410842
    804551 8fks:LH (2.88) BS01 rna ? GO:0002181 ... P62750 37410842
    804552 8fks:LH (2.88) BS02 rna ? GO:0002181 ... P62750 37410842
    804553 8fks:LI (2.88) BS01 rna ? GO:0002181 ... P61254 37410842
    804554 8fks:LI (2.88) BS02 rna ? GO:0002181 ... P61254 37410842
    804555 8fks:LK (2.88) BS01 rna ? GO:0002181 ... P46776 37410842
    804556 8fks:LL (2.88) BS01 rna ? GO:0002181 ... P46779 37410842
    804557 8fks:LN (2.88) BS01 rna ? GO:0002181 ... P39023 37410842
    804558 8fks:LQ (2.88) BS01 rna ? GO:0002181 ... P62910 37410842
    804559 8fks:LQ (2.88) BS02 MG ? GO:0002181 ... P62910 37410842
    804560 8fks:LS (2.88) BS01 rna ? GO:0000463 ... P42766 37410842
    804561 8fks:LS (2.88) BS02 rna ? GO:0000463 ... P42766 37410842
    804562 8fks:LT (2.88) BS01 rna ? GO:0000049 ... P18077 37410842
    804563 8fks:LT (2.88) BS02 MG ? GO:0000049 ... P18077 37410842
    804564 8fks:LU (2.88) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    804565 8fks:LW (2.88) BS01 rna ? GO:0002181 ... P61927 37410842
    804566 8fks:LW (2.88) BS02 rna ? GO:0002181 ... P61927 37410842
    804567 8fks:LW (2.88) BS03 ZN ? GO:0002181 ... P61927 37410842
    804568 8fks:NE (2.88) BS01 rna ? GO:0001652 ... O75683 37410842
    804569 8fks:NF (2.88) BS01 rna ? GO:0000460 ... O95478 37410842
    804570 8fks:NG (2.88) BS01 rna ? GO:0000460 ... Q9Y3B9 37410842
    804571 8fks:NN (2.88) BS01 rna ? GO:0000463 ... Q9NQ55 37410842
    804572 8fks:SA (2.88) BS01 rna ? GO:0002181 ... P36578 37410842
    804573 8fks:SA (2.88) BS02 rna ? GO:0002181 ... P36578 37410842
    804574 8fks:SC (2.88) BS01 rna ? GO:0002181 ... Q02878 37410842
    804575 8fks:SD (2.88) BS01 rna ? GO:0000463 ... P18124 37410842
    804576 8fks:SE (2.88) BS01 rna ? GO:0000470 ... P62424 37410842
    804577 8fks:SE (2.88) BS02 rna ? GO:0000470 ... P62424 37410842
    804578 8fks:SG (2.88) BS01 rna ? GO:0002181 ... P32969 37410842
    804579 8fks:SH (2.88) BS01 rna ? GO:0000794 ... Q9BYG3 37410842
    804580 8fks:SI (2.88) BS01 rna ? GO:0000463 ... Q6DKI1 37410842
    804581 8fks:SJ (2.88) BS01 rna 2.1.1.- GO:0000463 ... Q8IY81 37410842
    804582 8fks:SK (2.88) BS01 rna ? GO:0000054 ... P56537 37410842
    804583 8fks:SL (2.88) BS01 rna ? GO:0001649 ... O76021 37410842
    804584 8fks:SM (2.88) BS01 rna ? GO:0000463 ... O00541 37410842
    804585 8fks:SM (2.88) BS02 rna ? GO:0000463 ... O00541 37410842
    804586 8fks:SN (2.88) BS01 rna ? GO:0003723 ... Q99848 37410842
    804587 8fks:SO (2.88) BS01 rna ? GO:0000027 ... Q8TDN6 37410842
    804588 8fks:SQ (2.88) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    804589 8fks:SR (2.88) BS01 rna ? GO:0000079 ... Q9BZE4 37410842
    804590 8fks:SR (2.88) BS02 GDP ? GO:0000079 ... Q9BZE4 37410842
    804591 8fks:SS (2.88) BS01 rna ? GO:0000027 ... Q14137 37410842
    804592 8fks:SV (2.88) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    804593 8fks:SV (2.88) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    804594 8fks:SW (2.88) BS01 rna 3.6.4.13 GO:0000463 ... Q9NVP1 37410842
    804595 8fks:SZ (2.88) BS01 rna ? GO:0003723 ... Q9Y3C1 37410842
    804596 8fkt:BA (2.81) BS01 rna ? GO:0002181 ... P30050 37410842
    804597 8fkt:L6 (2.81) BS01 rna ? GO:0001824 ... P26373 37410842
    804598 8fkt:L6 (2.81) BS02 rna ? GO:0001824 ... P26373 37410842
    804599 8fkt:L7 (2.81) BS01 rna ? GO:0002181 ... P40429 37410842
    804600 8fkt:L8 (2.81) BS01 rna ? GO:0002181 ... P50914 37410842

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).