SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    805401 8fl4:SV (2.89) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    805402 8fl4:SV (2.89) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    805403 8fl6:BA (2.62) BS01 rna ? GO:0002181 ... P30050 37410842
    805404 8fl6:L5 (2.62) BS01 rna ? GO:0000027 ... P62913 37410842
    805405 8fl6:L5 (2.62) BS02 rna ? GO:0000027 ... P62913 37410842
    805406 8fl6:L6 (2.62) BS01 rna ? GO:0001824 ... P26373 37410842
    805407 8fl6:L6 (2.62) BS02 rna ? GO:0001824 ... P26373 37410842
    805408 8fl6:L7 (2.62) BS01 rna ? GO:0002181 ... P40429 37410842
    805409 8fl6:L8 (2.62) BS01 rna ? GO:0002181 ... P50914 37410842
    805410 8fl6:L9 (2.62) BS01 rna ? GO:0002181 ... P61313 37410842
    805411 8fl6:L9 (2.62) BS02 rna ? GO:0002181 ... P61313 37410842
    805412 8fl6:LA (2.62) BS01 rna ? GO:0002181 ... P18621 37410842
    805413 8fl6:LA (2.62) BS02 rna ? GO:0002181 ... P18621 37410842
    805414 8fl6:LB (2.62) BS01 rna ? GO:0002181 ... Q07020 37410842
    805415 8fl6:LC (2.62) BS01 rna ? GO:0002181 ... Q02543 37410842
    805416 8fl6:LC (2.62) BS02 rna ? GO:0002181 ... Q02543 37410842
    805417 8fl6:LD (2.62) BS01 rna ? GO:0002181 ... P84098 37410842
    805418 8fl6:LE (2.62) BS01 rna ? GO:0002181 ... P46778 37410842
    805419 8fl6:LE (2.62) BS02 rna ? GO:0002181 ... P46778 37410842
    805420 8fl6:LF (2.62) BS01 rna ? GO:0002181 ... P35268 37410842
    805421 8fl6:LG (2.62) BS01 rna ? GO:0000122 ... P62829 37410842
    805422 8fl6:LH (2.62) BS01 rna ? GO:0002181 ... P62750 37410842
    805423 8fl6:LH (2.62) BS02 rna ? GO:0002181 ... P62750 37410842
    805424 8fl6:LI (2.62) BS01 rna ? GO:0002181 ... P61254 37410842
    805425 8fl6:LI (2.62) BS02 rna ? GO:0002181 ... P61254 37410842
    805426 8fl6:LJ (2.62) BS01 rna ? GO:0002181 ... P61353 37410842
    805427 8fl6:LK (2.62) BS01 rna ? GO:0002181 ... P46776 37410842
    805428 8fl6:LL (2.62) BS01 rna ? GO:0002181 ... P46779 37410842
    805429 8fl6:LM (2.62) BS01 rna ? GO:0002181 ... P47914 37410842
    805430 8fl6:LN (2.62) BS01 rna ? GO:0002181 ... P39023 37410842
    805431 8fl6:LO (2.62) BS01 rna ? GO:0002181 ... P62888 37410842
    805432 8fl6:LP (2.62) BS01 rna ? GO:0002181 ... P62899 37410842
    805433 8fl6:LQ (2.62) BS01 rna ? GO:0002181 ... P62910 37410842
    805434 8fl6:LQ (2.62) BS02 MG ? GO:0002181 ... P62910 37410842
    805435 8fl6:LR (2.62) BS01 rna ? GO:0002181 ... P49207 37410842
    805436 8fl6:LR (2.62) BS02 ZN ? GO:0002181 ... P49207 37410842
    805437 8fl6:LS (2.62) BS01 rna ? GO:0000463 ... P42766 37410842
    805438 8fl6:LS (2.62) BS02 rna ? GO:0000463 ... P42766 37410842
    805439 8fl6:LT (2.62) BS01 rna ? GO:0000049 ... P18077 37410842
    805440 8fl6:LT (2.62) BS02 MG ? GO:0000049 ... P18077 37410842
    805441 8fl6:LU (2.62) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    805442 8fl6:LV (2.62) BS01 rna ? GO:0002181 ... P83881 37410842
    805443 8fl6:LV (2.62) BS02 ZN ? GO:0002181 ... P83881 37410842
    805444 8fl6:LW (2.62) BS01 rna ? GO:0002181 ... P61927 37410842
    805445 8fl6:LW (2.62) BS02 rna ? GO:0002181 ... P61927 37410842
    805446 8fl6:LW (2.62) BS03 ZN ? GO:0002181 ... P61927 37410842
    805447 8fl6:LX (2.62) BS01 rna ? GO:0002181 ... P61513 37410842
    805448 8fl6:LX (2.62) BS02 ZN ? GO:0002181 ... P61513 37410842
    805449 8fl6:LY (2.62) BS01 rna ? GO:0001501 ... P63173 37410842
    805450 8fl6:LZ (2.62) BS01 rna ? GO:0002181 ... P62891 37410842
    805451 8fl6:LZ (2.62) BS02 rna ? GO:0002181 ... P62891 37410842
    805452 8fl6:NF (2.62) BS01 rna ? GO:0000460 ... O95478 37410842
    805453 8fl6:NK (2.62) BS01 rna ? GO:0001099 ... Q9BRT6 37410842
    805454 8fl6:NL (2.62) BS01 rna ? GO:0000027 ... Q9NZM5 37410842
    805455 8fl6:NP (2.62) BS01 rna ? GO:0003676 ... O00488 37410842
    805456 8fl6:NP (2.62) BS02 ZN ? GO:0003676 ... O00488 37410842
    805457 8fl6:SA (2.62) BS01 rna ? GO:0002181 ... P36578 37410842
    805458 8fl6:SA (2.62) BS02 rna ? GO:0002181 ... P36578 37410842
    805459 8fl6:SB (2.62) BS01 rna ? GO:0000027 ... P46777 37410842
    805460 8fl6:SB (2.62) BS02 rna ? GO:0000027 ... P46777 37410842
    805461 8fl6:SC (2.62) BS01 rna ? GO:0002181 ... Q02878 37410842
    805462 8fl6:SD (2.62) BS01 rna ? GO:0000463 ... P18124 37410842
    805463 8fl6:SD (2.62) BS02 rna ? GO:0000463 ... P18124 37410842
    805464 8fl6:SE (2.62) BS01 rna ? GO:0000470 ... P62424 37410842
    805465 8fl6:SE (2.62) BS02 rna ? GO:0000470 ... P62424 37410842
    805466 8fl6:SF (2.62) BS01 rna ? GO:0002181 ... P62917 37410842
    805467 8fl6:SF (2.62) BS02 MG ? GO:0002181 ... P62917 37410842
    805468 8fl6:SG (2.62) BS01 rna ? GO:0002181 ... P32969 37410842
    805469 8fl6:SH (2.62) BS01 rna ? GO:0000794 ... Q9BYG3 37410842
    805470 8fl6:SI (2.62) BS01 rna ? GO:0000463 ... Q6DKI1 37410842
    805471 8fl6:SI (2.62) BS02 rna ? GO:0000463 ... Q6DKI1 37410842
    805472 8fl6:SI (2.62) BS03 rna ? GO:0000463 ... Q6DKI1 37410842
    805473 8fl6:SK (2.62) BS01 rna ? GO:0000054 ... P56537 37410842
    805474 8fl6:SL (2.62) BS01 rna ? GO:0001649 ... O76021 37410842
    805475 8fl6:SM (2.62) BS01 rna ? GO:0000463 ... O00541 37410842
    805476 8fl6:SM (2.62) BS02 rna ? GO:0000463 ... O00541 37410842
    805477 8fl6:SQ (2.62) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    805478 8fl6:SR (2.62) BS01 rna ? GO:0000079 ... Q9BZE4 37410842
    805479 8fl6:SR (2.62) BS02 rna ? GO:0000079 ... Q9BZE4 37410842
    805480 8fl6:SR (2.62) BS03 GDP ? GO:0000079 ... Q9BZE4 37410842
    805481 8fl6:SV (2.62) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    805482 8fl6:SV (2.62) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    805483 8fl7:BA (2.55) BS01 rna ? GO:0002181 ... P30050 37410842
    805484 8fl7:L5 (2.55) BS01 rna ? GO:0000027 ... P62913 37410842
    805485 8fl7:L5 (2.55) BS02 rna ? GO:0000027 ... P62913 37410842
    805486 8fl7:L6 (2.55) BS01 rna ? GO:0001824 ... P26373 37410842
    805487 8fl7:L6 (2.55) BS02 rna ? GO:0001824 ... P26373 37410842
    805488 8fl7:L7 (2.55) BS01 rna ? GO:0002181 ... P40429 37410842
    805489 8fl7:L8 (2.55) BS01 rna ? GO:0002181 ... P50914 37410842
    805490 8fl7:L9 (2.55) BS01 rna ? GO:0002181 ... P61313 37410842
    805491 8fl7:L9 (2.55) BS02 rna ? GO:0002181 ... P61313 37410842
    805492 8fl7:LA (2.55) BS01 rna ? GO:0002181 ... P18621 37410842
    805493 8fl7:LA (2.55) BS02 rna ? GO:0002181 ... P18621 37410842
    805494 8fl7:LB (2.55) BS01 rna ? GO:0002181 ... Q07020 37410842
    805495 8fl7:LC (2.55) BS01 rna ? GO:0002181 ... Q02543 37410842
    805496 8fl7:LC (2.55) BS02 rna ? GO:0002181 ... Q02543 37410842
    805497 8fl7:LD (2.55) BS01 rna ? GO:0002181 ... P84098 37410842
    805498 8fl7:LE (2.55) BS01 rna ? GO:0002181 ... P46778 37410842
    805499 8fl7:LE (2.55) BS02 rna ? GO:0002181 ... P46778 37410842
    805500 8fl7:LF (2.55) BS01 rna ? GO:0002181 ... P35268 37410842
    805501 8fl7:LG (2.55) BS01 rna ? GO:0000122 ... P62829 37410842
    805502 8fl7:LH (2.55) BS01 rna ? GO:0002181 ... P62750 37410842
    805503 8fl7:LH (2.55) BS02 rna ? GO:0002181 ... P62750 37410842
    805504 8fl7:LI (2.55) BS01 rna ? GO:0002181 ... P61254 37410842
    805505 8fl7:LI (2.55) BS02 rna ? GO:0002181 ... P61254 37410842
    805506 8fl7:LJ (2.55) BS01 rna ? GO:0002181 ... P61353 37410842
    805507 8fl7:LK (2.55) BS01 rna ? GO:0002181 ... P46776 37410842
    805508 8fl7:LL (2.55) BS01 rna ? GO:0002181 ... P46779 37410842
    805509 8fl7:LM (2.55) BS01 rna ? GO:0002181 ... P47914 37410842
    805510 8fl7:LN (2.55) BS01 rna ? GO:0002181 ... P39023 37410842
    805511 8fl7:LO (2.55) BS01 rna ? GO:0002181 ... P62888 37410842
    805512 8fl7:LP (2.55) BS01 rna ? GO:0002181 ... P62899 37410842
    805513 8fl7:LQ (2.55) BS01 rna ? GO:0002181 ... P62910 37410842
    805514 8fl7:LQ (2.55) BS02 MG ? GO:0002181 ... P62910 37410842
    805515 8fl7:LR (2.55) BS01 rna ? GO:0002181 ... P49207 37410842
    805516 8fl7:LR (2.55) BS02 MG ? GO:0002181 ... P49207 37410842
    805517 8fl7:LR (2.55) BS03 ZN ? GO:0002181 ... P49207 37410842
    805518 8fl7:LS (2.55) BS01 rna ? GO:0000463 ... P42766 37410842
    805519 8fl7:LS (2.55) BS02 rna ? GO:0000463 ... P42766 37410842
    805520 8fl7:LT (2.55) BS01 rna ? GO:0000049 ... P18077 37410842
    805521 8fl7:LT (2.55) BS02 MG ? GO:0000049 ... P18077 37410842
    805522 8fl7:LU (2.55) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    805523 8fl7:LV (2.55) BS01 rna ? GO:0002181 ... P83881 37410842
    805524 8fl7:LV (2.55) BS02 ZN ? GO:0002181 ... P83881 37410842
    805525 8fl7:LW (2.55) BS01 rna ? GO:0002181 ... P61927 37410842
    805526 8fl7:LW (2.55) BS02 rna ? GO:0002181 ... P61927 37410842
    805527 8fl7:LW (2.55) BS03 ZN ? GO:0002181 ... P61927 37410842
    805528 8fl7:LX (2.55) BS01 rna ? GO:0002181 ... P61513 37410842
    805529 8fl7:LX (2.55) BS02 ZN ? GO:0002181 ... P61513 37410842
    805530 8fl7:LY (2.55) BS01 rna ? GO:0001501 ... P63173 37410842
    805531 8fl7:LZ (2.55) BS01 rna ? GO:0002181 ... P62891 37410842
    805532 8fl7:LZ (2.55) BS02 rna ? GO:0002181 ... P62891 37410842
    805533 8fl7:NF (2.55) BS01 rna ? GO:0000460 ... O95478 37410842
    805534 8fl7:NK (2.55) BS01 rna ? GO:0001099 ... Q9BRT6 37410842
    805535 8fl7:NL (2.55) BS01 rna ? GO:0000027 ... Q9NZM5 37410842
    805536 8fl7:NP (2.55) BS01 rna ? GO:0003676 ... O00488 37410842
    805537 8fl7:NP (2.55) BS02 ZN ? GO:0003676 ... O00488 37410842
    805538 8fl7:SA (2.55) BS01 rna ? GO:0002181 ... P36578 37410842
    805539 8fl7:SA (2.55) BS02 rna ? GO:0002181 ... P36578 37410842
    805540 8fl7:SB (2.55) BS01 rna ? GO:0000027 ... P46777 37410842
    805541 8fl7:SB (2.55) BS02 rna ? GO:0000027 ... P46777 37410842
    805542 8fl7:SC (2.55) BS01 rna ? GO:0002181 ... Q02878 37410842
    805543 8fl7:SD (2.55) BS01 rna ? GO:0000463 ... P18124 37410842
    805544 8fl7:SD (2.55) BS02 rna ? GO:0000463 ... P18124 37410842
    805545 8fl7:SE (2.55) BS01 rna ? GO:0000470 ... P62424 37410842
    805546 8fl7:SE (2.55) BS02 rna ? GO:0000470 ... P62424 37410842
    805547 8fl7:SF (2.55) BS01 rna ? GO:0002181 ... P62917 37410842
    805548 8fl7:SF (2.55) BS02 MG ? GO:0002181 ... P62917 37410842
    805549 8fl7:SG (2.55) BS01 rna ? GO:0002181 ... P32969 37410842
    805550 8fl7:SI (2.55) BS01 rna ? GO:0000463 ... Q6DKI1 37410842
    805551 8fl7:SI (2.55) BS02 rna ? GO:0000463 ... Q6DKI1 37410842
    805552 8fl7:SK (2.55) BS01 rna ? GO:0000054 ... P56537 37410842
    805553 8fl7:SM (2.55) BS01 rna ? GO:0000463 ... O00541 37410842
    805554 8fl7:SM (2.55) BS02 rna ? GO:0000463 ... O00541 37410842
    805555 8fl7:SQ (2.55) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    805556 8fl7:SR (2.55) BS01 rna ? GO:0000079 ... Q9BZE4 37410842
    805557 8fl7:SR (2.55) BS02 rna ? GO:0000079 ... Q9BZE4 37410842
    805558 8fl7:SR (2.55) BS03 GDP ? GO:0000079 ... Q9BZE4 37410842
    805559 8fl7:SR (2.55) BS04 MG ? GO:0000079 ... Q9BZE4 37410842
    805560 8fl7:SV (2.55) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    805561 8fl7:SV (2.55) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    805562 8fl8:A (4.2) BS01 ATP ? GO:0005524 ... P07251 38316880
    805563 8fl8:A (4.2) BS02 ATP ? GO:0005524 ... P07251 38316880
    805564 8fl8:B (4.2) BS01 ATP ? GO:0005524 ... P07251 38316880
    805565 8fl8:C (4.2) BS01 ATP ? GO:0005524 ... P07251 38316880
    805566 8fl8:E (4.2) BS01 ATP 7.1.2.2 GO:0005515 ... P00830 38316880
    805567 8fl8:F (4.2) BS01 ADP 7.1.2.2 GO:0005515 ... P00830 38316880
    805568 8fl9:BA (2.75) BS01 rna ? GO:0002181 ... P30050 37410842
    805569 8fl9:L5 (2.75) BS01 rna ? GO:0000027 ... P62913 37410842
    805570 8fl9:L5 (2.75) BS02 rna ? GO:0000027 ... P62913 37410842
    805571 8fl9:L6 (2.75) BS01 rna ? GO:0001824 ... P26373 37410842
    805572 8fl9:L6 (2.75) BS02 rna ? GO:0001824 ... P26373 37410842
    805573 8fl9:L7 (2.75) BS01 rna ? GO:0002181 ... P40429 37410842
    805574 8fl9:L8 (2.75) BS01 rna ? GO:0002181 ... P50914 37410842
    805575 8fl9:L9 (2.75) BS01 rna ? GO:0002181 ... P61313 37410842
    805576 8fl9:L9 (2.75) BS02 rna ? GO:0002181 ... P61313 37410842
    805577 8fl9:LA (2.75) BS01 rna ? GO:0002181 ... P18621 37410842
    805578 8fl9:LA (2.75) BS02 rna ? GO:0002181 ... P18621 37410842
    805579 8fl9:LB (2.75) BS01 rna ? GO:0002181 ... Q07020 37410842
    805580 8fl9:LC (2.75) BS01 rna ? GO:0002181 ... Q02543 37410842
    805581 8fl9:LC (2.75) BS02 rna ? GO:0002181 ... Q02543 37410842
    805582 8fl9:LD (2.75) BS01 rna ? GO:0002181 ... P84098 37410842
    805583 8fl9:LE (2.75) BS01 rna ? GO:0002181 ... P46778 37410842
    805584 8fl9:LE (2.75) BS02 rna ? GO:0002181 ... P46778 37410842
    805585 8fl9:LF (2.75) BS01 rna ? GO:0002181 ... P35268 37410842
    805586 8fl9:LG (2.75) BS01 rna ? GO:0000122 ... P62829 37410842
    805587 8fl9:LH (2.75) BS01 rna ? GO:0002181 ... P62750 37410842
    805588 8fl9:LH (2.75) BS02 rna ? GO:0002181 ... P62750 37410842
    805589 8fl9:LI (2.75) BS01 rna ? GO:0002181 ... P61254 37410842
    805590 8fl9:LI (2.75) BS02 rna ? GO:0002181 ... P61254 37410842
    805591 8fl9:LJ (2.75) BS01 rna ? GO:0002181 ... P61353 37410842
    805592 8fl9:LK (2.75) BS01 rna ? GO:0002181 ... P46776 37410842
    805593 8fl9:LL (2.75) BS01 rna ? GO:0002181 ... P46779 37410842
    805594 8fl9:LM (2.75) BS01 rna ? GO:0002181 ... P47914 37410842
    805595 8fl9:LN (2.75) BS01 rna ? GO:0002181 ... P39023 37410842
    805596 8fl9:LO (2.75) BS01 rna ? GO:0002181 ... P62888 37410842
    805597 8fl9:LP (2.75) BS01 rna ? GO:0002181 ... P62899 37410842
    805598 8fl9:LQ (2.75) BS01 rna ? GO:0002181 ... P62910 37410842
    805599 8fl9:LR (2.75) BS01 rna ? GO:0002181 ... P49207 37410842
    805600 8fl9:LR (2.75) BS02 ZN ? GO:0002181 ... P49207 37410842

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).