SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    808601 8fkr:LK (2.89) BS01 rna ? GO:0002181 ... P46776 37410842
    808602 8fkr:LN (2.89) BS01 rna ? GO:0002181 ... P39023 37410842
    808603 8fkr:LQ (2.89) BS01 rna ? GO:0002181 ... P62910 37410842
    808604 8fkr:LS (2.89) BS01 rna ? GO:0000463 ... P42766 37410842
    808605 8fkr:LS (2.89) BS02 rna ? GO:0000463 ... P42766 37410842
    808606 8fkr:LT (2.89) BS01 rna ? GO:0002181 ... P18077 37410842
    808607 8fkr:LT (2.89) BS02 MG ? GO:0002181 ... P18077 37410842
    808608 8fkr:LU (2.89) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    808609 8fkr:LW (2.89) BS01 rna ? GO:0000448 ... P61927 37410842
    808610 8fkr:LW (2.89) BS02 rna ? GO:0000448 ... P61927 37410842
    808611 8fkr:LW (2.89) BS03 ZN ? GO:0000448 ... P61927 37410842
    808612 8fkr:NE (2.89) BS01 rna ? GO:0001652 ... O75683 37410842
    808613 8fkr:NF (2.89) BS01 rna ? GO:0000460 ... O95478 37410842
    808614 8fkr:NG (2.89) BS01 rna ? GO:0000460 ... Q9Y3B9 37410842
    808615 8fkr:NM (2.89) BS01 rna ? GO:0000460 ... Q9BXY0 37410842
    808616 8fkr:NM (2.89) BS02 SF4 ? GO:0000460 ... Q9BXY0 37410842
    808617 8fkr:NN (2.89) BS01 rna ? GO:0000463 ... Q9NQ55 37410842
    808618 8fkr:NO (2.89) BS01 rna ? GO:0003713 ... P56182 37410842
    808619 8fkr:NQ (2.89) BS01 rna ? GO:0000176 ... Q6RFH5 37410842
    808620 8fkr:NS (2.89) BS01 rna ? GO:0000460 ... Q9H9Y2 37410842
    808621 8fkr:NS (2.89) BS02 rna ? GO:0000460 ... Q9H9Y2 37410842
    808622 8fkr:SA (2.89) BS01 rna ? GO:0002181 ... P36578 37410842
    808623 8fkr:SA (2.89) BS02 rna ? GO:0002181 ... P36578 37410842
    808624 8fkr:SC (2.89) BS01 rna ? GO:0002181 ... Q02878 37410842
    808625 8fkr:SD (2.89) BS01 rna ? GO:0000463 ... P18124 37410842
    808626 8fkr:SE (2.89) BS01 rna ? GO:0000470 ... P62424 37410842
    808627 8fkr:SE (2.89) BS02 rna ? GO:0000470 ... P62424 37410842
    808628 8fkr:SG (2.89) BS01 rna ? GO:0002181 ... P32969 37410842
    808629 8fkr:SH (2.89) BS01 rna ? GO:0000794 ... Q9BYG3 37410842
    808630 8fkr:SI (2.89) BS01 rna ? GO:0000463 ... Q6DKI1 37410842
    808631 8fkr:SK (2.89) BS01 rna ? GO:0000054 ... P56537 37410842
    808632 8fkr:SL (2.89) BS01 rna ? GO:0001649 ... O76021 37410842
    808633 8fkr:SM (2.89) BS01 rna ? GO:0000463 ... O00541 37410842
    808634 8fkr:SM (2.89) BS02 rna ? GO:0000463 ... O00541 37410842
    808635 8fkr:SN (2.89) BS01 rna ? GO:0003723 ... Q99848 37410842
    808636 8fkr:SO (2.89) BS01 rna ? GO:0000027 ... Q8TDN6 37410842
    808637 8fkr:SQ (2.89) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    808638 8fkr:SR (2.89) BS01 rna ? GO:0001649 ... Q9BZE4 37410842
    808639 8fkr:SR (2.89) BS02 GDP ? GO:0001649 ... Q9BZE4 37410842
    808640 8fkr:SS (2.89) BS01 rna ? GO:0000027 ... Q14137 37410842
    808641 8fkr:SV (2.89) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    808642 8fkr:SV (2.89) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    808643 8fkr:SW (2.89) BS01 rna 3.6.4.13 GO:0000463 ... Q9NVP1 37410842
    808644 8fkr:SZ (2.89) BS01 rna ? GO:0003723 ... Q9Y3C1 37410842
    808645 8fks:BA (2.88) BS01 rna ? GO:0002181 ... P30050 37410842
    808646 8fks:L6 (2.88) BS01 rna ? GO:0002181 ... P26373 37410842
    808647 8fks:L6 (2.88) BS02 rna ? GO:0002181 ... P26373 37410842
    808648 8fks:L7 (2.88) BS01 rna ? GO:0002181 ... P40429 37410842
    808649 8fks:L8 (2.88) BS01 rna ? GO:0002181 ... P50914 37410842
    808650 8fks:L9 (2.88) BS01 rna ? GO:0002181 ... P61313 37410842
    808651 8fks:L9 (2.88) BS02 rna ? GO:0002181 ... P61313 37410842
    808652 8fks:L9 (2.88) BS03 MG ? GO:0002181 ... P61313 37410842
    808653 8fks:LA (2.88) BS01 rna ? GO:0002181 ... P18621 37410842
    808654 8fks:LA (2.88) BS02 rna ? GO:0002181 ... P18621 37410842
    808655 8fks:LB (2.88) BS01 rna ? GO:0002181 ... Q07020 37410842
    808656 8fks:LC (2.88) BS01 rna ? GO:0002181 ... Q02543 37410842
    808657 8fks:LE (2.88) BS01 rna ? GO:0001650 ... P46778 37410842
    808658 8fks:LH (2.88) BS01 rna ? GO:0002181 ... P62750 37410842
    808659 8fks:LH (2.88) BS02 rna ? GO:0002181 ... P62750 37410842
    808660 8fks:LI (2.88) BS01 rna ? GO:0002181 ... P61254 37410842
    808661 8fks:LI (2.88) BS02 rna ? GO:0002181 ... P61254 37410842
    808662 8fks:LK (2.88) BS01 rna ? GO:0002181 ... P46776 37410842
    808663 8fks:LL (2.88) BS01 rna ? GO:0002181 ... P46779 37410842
    808664 8fks:LN (2.88) BS01 rna ? GO:0002181 ... P39023 37410842
    808665 8fks:LQ (2.88) BS01 rna ? GO:0002181 ... P62910 37410842
    808666 8fks:LQ (2.88) BS02 MG ? GO:0002181 ... P62910 37410842
    808667 8fks:LS (2.88) BS01 rna ? GO:0000463 ... P42766 37410842
    808668 8fks:LS (2.88) BS02 rna ? GO:0000463 ... P42766 37410842
    808669 8fks:LT (2.88) BS01 rna ? GO:0002181 ... P18077 37410842
    808670 8fks:LT (2.88) BS02 MG ? GO:0002181 ... P18077 37410842
    808671 8fks:LU (2.88) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    808672 8fks:LW (2.88) BS01 rna ? GO:0000448 ... P61927 37410842
    808673 8fks:LW (2.88) BS02 rna ? GO:0000448 ... P61927 37410842
    808674 8fks:LW (2.88) BS03 ZN ? GO:0000448 ... P61927 37410842
    808675 8fks:NE (2.88) BS01 rna ? GO:0001652 ... O75683 37410842
    808676 8fks:NF (2.88) BS01 rna ? GO:0000460 ... O95478 37410842
    808677 8fks:NG (2.88) BS01 rna ? GO:0000460 ... Q9Y3B9 37410842
    808678 8fks:NN (2.88) BS01 rna ? GO:0000463 ... Q9NQ55 37410842
    808679 8fks:SA (2.88) BS01 rna ? GO:0002181 ... P36578 37410842
    808680 8fks:SA (2.88) BS02 rna ? GO:0002181 ... P36578 37410842
    808681 8fks:SC (2.88) BS01 rna ? GO:0002181 ... Q02878 37410842
    808682 8fks:SD (2.88) BS01 rna ? GO:0000463 ... P18124 37410842
    808683 8fks:SE (2.88) BS01 rna ? GO:0000470 ... P62424 37410842
    808684 8fks:SE (2.88) BS02 rna ? GO:0000470 ... P62424 37410842
    808685 8fks:SG (2.88) BS01 rna ? GO:0002181 ... P32969 37410842
    808686 8fks:SH (2.88) BS01 rna ? GO:0000794 ... Q9BYG3 37410842
    808687 8fks:SI (2.88) BS01 rna ? GO:0000463 ... Q6DKI1 37410842
    808688 8fks:SJ (2.88) BS01 rna 2.1.1.- GO:0000463 ... Q8IY81 37410842
    808689 8fks:SK (2.88) BS01 rna ? GO:0000054 ... P56537 37410842
    808690 8fks:SL (2.88) BS01 rna ? GO:0001649 ... O76021 37410842
    808691 8fks:SM (2.88) BS01 rna ? GO:0000463 ... O00541 37410842
    808692 8fks:SM (2.88) BS02 rna ? GO:0000463 ... O00541 37410842
    808693 8fks:SN (2.88) BS01 rna ? GO:0003723 ... Q99848 37410842
    808694 8fks:SO (2.88) BS01 rna ? GO:0000027 ... Q8TDN6 37410842
    808695 8fks:SQ (2.88) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    808696 8fks:SR (2.88) BS01 rna ? GO:0001649 ... Q9BZE4 37410842
    808697 8fks:SR (2.88) BS02 GDP ? GO:0001649 ... Q9BZE4 37410842
    808698 8fks:SS (2.88) BS01 rna ? GO:0000027 ... Q14137 37410842
    808699 8fks:SV (2.88) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    808700 8fks:SV (2.88) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    808701 8fks:SW (2.88) BS01 rna 3.6.4.13 GO:0000463 ... Q9NVP1 37410842
    808702 8fks:SZ (2.88) BS01 rna ? GO:0003723 ... Q9Y3C1 37410842
    808703 8fkt:BA (2.81) BS01 rna ? GO:0002181 ... P30050 37410842
    808704 8fkt:L6 (2.81) BS01 rna ? GO:0002181 ... P26373 37410842
    808705 8fkt:L6 (2.81) BS02 rna ? GO:0002181 ... P26373 37410842
    808706 8fkt:L7 (2.81) BS01 rna ? GO:0002181 ... P40429 37410842
    808707 8fkt:L8 (2.81) BS01 rna ? GO:0002181 ... P50914 37410842
    808708 8fkt:L9 (2.81) BS01 rna ? GO:0002181 ... P61313 37410842
    808709 8fkt:L9 (2.81) BS02 rna ? GO:0002181 ... P61313 37410842
    808710 8fkt:LA (2.81) BS01 rna ? GO:0002181 ... P18621 37410842
    808711 8fkt:LA (2.81) BS02 rna ? GO:0002181 ... P18621 37410842
    808712 8fkt:LB (2.81) BS01 rna ? GO:0002181 ... Q07020 37410842
    808713 8fkt:LC (2.81) BS01 rna ? GO:0002181 ... Q02543 37410842
    808714 8fkt:LE (2.81) BS01 rna ? GO:0001650 ... P46778 37410842
    808715 8fkt:LG (2.81) BS01 rna ? GO:0000122 ... P62829 37410842
    808716 8fkt:LH (2.81) BS01 rna ? GO:0002181 ... P62750 37410842
    808717 8fkt:LH (2.81) BS02 rna ? GO:0002181 ... P62750 37410842
    808718 8fkt:LI (2.81) BS01 rna ? GO:0002181 ... P61254 37410842
    808719 8fkt:LI (2.81) BS02 rna ? GO:0002181 ... P61254 37410842
    808720 8fkt:LK (2.81) BS01 rna ? GO:0002181 ... P46776 37410842
    808721 8fkt:LN (2.81) BS01 rna ? GO:0002181 ... P39023 37410842
    808722 8fkt:LQ (2.81) BS01 rna ? GO:0002181 ... P62910 37410842
    808723 8fkt:LQ (2.81) BS02 MG ? GO:0002181 ... P62910 37410842
    808724 8fkt:LS (2.81) BS01 rna ? GO:0000463 ... P42766 37410842
    808725 8fkt:LS (2.81) BS02 rna ? GO:0000463 ... P42766 37410842
    808726 8fkt:LT (2.81) BS01 rna ? GO:0002181 ... P18077 37410842
    808727 8fkt:LT (2.81) BS02 MG ? GO:0002181 ... P18077 37410842
    808728 8fkt:LU (2.81) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    808729 8fkt:LW (2.81) BS01 rna ? GO:0000448 ... P61927 37410842
    808730 8fkt:LW (2.81) BS02 rna ? GO:0000448 ... P61927 37410842
    808731 8fkt:LW (2.81) BS03 ZN ? GO:0000448 ... P61927 37410842
    808732 8fkt:NB (2.81) BS01 rna ? GO:0003723 ... Q9BVP2 37410842
    808733 8fkt:NF (2.81) BS01 rna ? GO:0000460 ... O95478 37410842
    808734 8fkt:NH (2.81) BS01 rna ? GO:0003723 ... Q9Y221 37410842
    808735 8fkt:NI (2.81) BS01 rna 3.6.4.13 GO:0003676 ... Q8TDD1 37410842
    808736 8fkt:NI (2.81) BS02 ADP 3.6.4.13 GO:0003676 ... Q8TDD1 37410842
    808737 8fkt:NK (2.81) BS01 rna ? GO:0003723 ... Q9BRT6 37410842
    808738 8fkt:NM (2.81) BS01 rna ? GO:0000460 ... Q9BXY0 37410842
    808739 8fkt:NM (2.81) BS02 SF4 ? GO:0000460 ... Q9BXY0 37410842
    808740 8fkt:NO (2.81) BS01 rna ? GO:0003713 ... P56182 37410842
    808741 8fkt:NQ (2.81) BS01 rna ? GO:0000176 ... Q6RFH5 37410842
    808742 8fkt:NS (2.81) BS01 rna ? GO:0000460 ... Q9H9Y2 37410842
    808743 8fkt:NS (2.81) BS02 rna ? GO:0000460 ... Q9H9Y2 37410842
    808744 8fkt:SA (2.81) BS01 rna ? GO:0002181 ... P36578 37410842
    808745 8fkt:SA (2.81) BS02 rna ? GO:0002181 ... P36578 37410842
    808746 8fkt:SC (2.81) BS01 rna ? GO:0002181 ... Q02878 37410842
    808747 8fkt:SD (2.81) BS01 rna ? GO:0000463 ... P18124 37410842
    808748 8fkt:SE (2.81) BS01 rna ? GO:0000470 ... P62424 37410842
    808749 8fkt:SE (2.81) BS02 rna ? GO:0000470 ... P62424 37410842
    808750 8fkt:SE (2.81) BS03 rna ? GO:0000470 ... P62424 37410842
    808751 8fkt:SG (2.81) BS01 rna ? GO:0002181 ... P32969 37410842
    808752 8fkt:SH (2.81) BS01 rna ? GO:0000794 ... Q9BYG3 37410842
    808753 8fkt:SI (2.81) BS01 rna ? GO:0000463 ... Q6DKI1 37410842
    808754 8fkt:SI (2.81) BS02 rna ? GO:0000463 ... Q6DKI1 37410842
    808755 8fkt:SI (2.81) BS03 rna ? GO:0000463 ... Q6DKI1 37410842
    808756 8fkt:SJ (2.81) BS01 rna 2.1.1.- GO:0000463 ... Q8IY81 37410842
    808757 8fkt:SK (2.81) BS01 rna ? GO:0000054 ... P56537 37410842
    808758 8fkt:SL (2.81) BS01 rna ? GO:0001649 ... O76021 37410842
    808759 8fkt:SM (2.81) BS01 rna ? GO:0000463 ... O00541 37410842
    808760 8fkt:SM (2.81) BS02 rna ? GO:0000463 ... O00541 37410842
    808761 8fkt:SN (2.81) BS01 rna ? GO:0003723 ... Q99848 37410842
    808762 8fkt:SO (2.81) BS01 rna ? GO:0000027 ... Q8TDN6 37410842
    808763 8fkt:SQ (2.81) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    808764 8fkt:SR (2.81) BS01 rna ? GO:0001649 ... Q9BZE4 37410842
    808765 8fkt:SR (2.81) BS02 GDP ? GO:0001649 ... Q9BZE4 37410842
    808766 8fkt:SS (2.81) BS01 rna ? GO:0000027 ... Q14137 37410842
    808767 8fkt:ST (2.81) BS01 rna ? GO:0000027 ... Q15050 37410842
    808768 8fkt:SV (2.81) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    808769 8fkt:SV (2.81) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    808770 8fkt:SW (2.81) BS01 rna 3.6.4.13 GO:0000463 ... Q9NVP1 37410842
    808771 8fkt:SY (2.81) BS01 rna 2.1.1.- GO:0000027 ... P46087 37410842
    808772 8fkt:SZ (2.81) BS01 rna ? GO:0003723 ... Q9Y3C1 37410842
    808773 8fkt:SZ (2.81) BS02 rna ? GO:0003723 ... Q9Y3C1 37410842
    808774 8fku:BA (2.82) BS01 rna ? GO:0002181 ... P30050 37410842
    808775 8fku:BB (2.82) BS01 rna ? GO:0002181 ... P62906 37410842
    808776 8fku:L6 (2.82) BS01 rna ? GO:0002181 ... P26373 37410842
    808777 8fku:L6 (2.82) BS02 rna ? GO:0002181 ... P26373 37410842
    808778 8fku:L7 (2.82) BS01 rna ? GO:0002181 ... P40429 37410842
    808779 8fku:L8 (2.82) BS01 rna ? GO:0002181 ... P50914 37410842
    808780 8fku:L9 (2.82) BS01 rna ? GO:0002181 ... P61313 37410842
    808781 8fku:L9 (2.82) BS02 rna ? GO:0002181 ... P61313 37410842
    808782 8fku:L9 (2.82) BS03 MG ? GO:0002181 ... P61313 37410842
    808783 8fku:LA (2.82) BS01 rna ? GO:0002181 ... P18621 37410842
    808784 8fku:LA (2.82) BS02 rna ? GO:0002181 ... P18621 37410842
    808785 8fku:LB (2.82) BS01 rna ? GO:0002181 ... Q07020 37410842
    808786 8fku:LC (2.82) BS01 rna ? GO:0002181 ... Q02543 37410842
    808787 8fku:LE (2.82) BS01 rna ? GO:0001650 ... P46778 37410842
    808788 8fku:LG (2.82) BS01 rna ? GO:0000122 ... P62829 37410842
    808789 8fku:LH (2.82) BS01 rna ? GO:0002181 ... P62750 37410842
    808790 8fku:LH (2.82) BS02 rna ? GO:0002181 ... P62750 37410842
    808791 8fku:LI (2.82) BS01 rna ? GO:0002181 ... P61254 37410842
    808792 8fku:LI (2.82) BS02 rna ? GO:0002181 ... P61254 37410842
    808793 8fku:LK (2.82) BS01 rna ? GO:0002181 ... P46776 37410842
    808794 8fku:LL (2.82) BS01 rna ? GO:0002181 ... P46779 37410842
    808795 8fku:LN (2.82) BS01 rna ? GO:0002181 ... P39023 37410842
    808796 8fku:LQ (2.82) BS01 rna ? GO:0002181 ... P62910 37410842
    808797 8fku:LQ (2.82) BS02 MG ? GO:0002181 ... P62910 37410842
    808798 8fku:LS (2.82) BS01 rna ? GO:0000463 ... P42766 37410842
    808799 8fku:LS (2.82) BS02 rna ? GO:0000463 ... P42766 37410842
    808800 8fku:LT (2.82) BS01 rna ? GO:0002181 ... P18077 37410842

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).