SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    809001 8fze:g (3.0) BS03 rna N/A GO:0003723 ... P02359 39030416
    809002 8fze:h (3.0) BS01 rna N/A GO:0000028 ... P0A7W7 39030416
    809003 8fze:i (3.0) BS01 rna N/A GO:0000049 ... P0A7X3 39030416
    809004 8fze:i (3.0) BS02 rna N/A GO:0000049 ... P0A7X3 39030416
    809005 8fze:j (3.0) BS01 rna N/A GO:0000049 ... P0A7R5 39030416
    809006 8fze:k (3.0) BS01 rna N/A GO:0002181 ... P0A7R9 39030416
    809007 8fze:l (3.0) BS01 rna N/A GO:0000049 ... P0A7S3 39030416
    809008 8fze:m (3.0) BS01 rna N/A GO:0000049 ... P0A7S9 39030416
    809009 8fze:m (3.0) BS02 rna N/A GO:0000049 ... P0A7S9 39030416
    809010 8fze:n (3.0) BS01 rna N/A GO:0000028 ... P0AG59 39030416
    809011 8fze:o (3.0) BS01 rna N/A GO:0000028 ... P0ADZ4 39030416
    809012 8fze:o (3.0) BS02 rna N/A GO:0000028 ... P0ADZ4 39030416
    809013 8fze:p (3.0) BS01 rna N/A GO:0000028 ... P0A7T3 39030416
    809014 8fze:q (3.0) BS01 rna N/A GO:0000028 ... P0AG63 39030416
    809015 8fze:r (3.0) BS01 rna N/A GO:0002181 ... P0A7T7 39030416
    809016 8fze:s (3.0) BS01 rna N/A GO:0000028 ... P0A7U3 39030416
    809017 8fze:t (3.0) BS01 rna N/A GO:0000028 ... P0A7U7 39030416
    809018 8fze:u (3.0) BS01 rna N/A GO:0000028 ... P68679 39030416
    809019 8fze:w (3.0) BS01 rna N/A GO:0003747 ... P0A7I0 39030416
    809020 8fze:w (3.0) BS02 rna N/A GO:0003747 ... P0A7I0 39030416
    809021 8fze:w (3.0) BS03 rna N/A GO:0003747 ... P0A7I0 39030416
    809022 8fze:w (3.0) BS04 rna N/A GO:0003747 ... P0A7I0 39030416
    809023 8fzf:1 (3.2) BS01 rna N/A GO:0000027 ... P0A7M6 39030416
    809024 8fzf:2 (3.2) BS01 rna N/A GO:0000027 ... P0AG51 39030416
    809025 8fzf:2 (3.2) BS02 rna N/A GO:0000027 ... P0AG51 39030416
    809026 8fzf:3 (3.2) BS01 rna N/A GO:0002181 ... P0A7M9 39030416
    809027 8fzf:3 (3.2) BS02 ZN N/A GO:0002181 ... P0A7M9 39030416
    809028 8fzf:4 (3.2) BS01 rna N/A GO:0000027 ... P0A7N4 39030416
    809029 8fzf:5 (3.2) BS01 rna N/A GO:0000027 ... P0A7N9 39030416
    809030 8fzf:6 (3.2) BS01 rna N/A GO:0002181 ... P0A7P5 39030416
    809031 8fzf:7 (3.2) BS01 rna N/A GO:0002181 ... P0A7Q1 39030416
    809032 8fzf:8 (3.2) BS01 rna N/A GO:0002181 ... P0A7Q6 39030416
    809033 8fzf:8 (3.2) BS02 ZN N/A GO:0002181 ... P0A7Q6 39030416
    809034 8fzf:C (3.2) BS01 rna N/A GO:0000027 ... P60422 39030416
    809035 8fzf:C (3.2) BS02 rna N/A GO:0000027 ... P60422 39030416
    809036 8fzf:D (3.2) BS01 rna N/A GO:0000027 ... P60438 39030416
    809037 8fzf:E (3.2) BS01 rna N/A GO:0001070 ... P60723 39030416
    809038 8fzf:F (3.2) BS01 rna N/A GO:0000027 ... P62399 39030416
    809039 8fzf:F (3.2) BS02 rna N/A GO:0000027 ... P62399 39030416
    809040 8fzf:G (3.2) BS01 rna N/A GO:0000027 ... P0AG55 39030416
    809041 8fzf:I (3.2) BS01 rna N/A GO:0002181 ... P0A7J3 39030416
    809042 8fzf:J (3.2) BS01 rna N/A GO:0000027 ... P0A7J7 39030416
    809043 8fzf:L (3.2) BS01 rna N/A GO:0002181 ... P0AA10 39030416
    809044 8fzf:M (3.2) BS01 rna N/A GO:0002181 ... P0ADY3 39030416
    809045 8fzf:M (3.2) BS02 rna N/A GO:0002181 ... P0ADY3 39030416
    809046 8fzf:N (3.2) BS01 rna N/A GO:0002181 ... P02413 39030416
    809047 8fzf:O (3.2) BS01 rna N/A GO:0000027 ... P0ADY7 39030416
    809048 8fzf:P (3.2) BS01 rna N/A GO:0000027 ... P0AG44 39030416
    809049 8fzf:Q (3.2) BS01 rna N/A GO:0002181 ... P0C018 39030416
    809050 8fzf:Q (3.2) BS02 rna N/A GO:0002181 ... P0C018 39030416
    809051 8fzf:R (3.2) BS01 rna N/A GO:0000027 ... P0A7K6 39030416
    809052 8fzf:S (3.2) BS01 rna N/A GO:0000027 ... P0A7L3 39030416
    809053 8fzf:T (3.2) BS01 rna N/A GO:0002181 ... P0AG48 39030416
    809054 8fzf:U (3.2) BS01 rna N/A GO:0002181 ... P61175 39030416
    809055 8fzf:V (3.2) BS01 rna N/A GO:0000027 ... P0ADZ0 39030416
    809056 8fzf:W (3.2) BS01 rna N/A GO:0000027 ... P60624 39030416
    809057 8fzf:X (3.2) BS01 rna N/A GO:0000027 ... P68919 39030416
    809058 8fzf:Y (3.2) BS01 rna N/A GO:0000027 ... P0A7L8 39030416
    809059 8fzf:Y (3.2) BS02 rna N/A GO:0000027 ... P0A7L8 39030416
    809060 8fzf:Z (3.2) BS01 rna N/A GO:0000027 ... P0A7M2 39030416
    809061 8fzf:b (3.2) BS01 rna N/A GO:0000028 ... P0A7V0 39030416
    809062 8fzf:c (3.2) BS01 rna N/A GO:0000028 ... P0A7V3 39030416
    809063 8fzf:d (3.2) BS01 rna N/A GO:0000028 ... P0A7V8 39030416
    809064 8fzf:e (3.2) BS01 rna N/A GO:0000028 ... P0A7W1 39030416
    809065 8fzf:f (3.2) BS01 rna N/A GO:0002181 ... P02358 39030416
    809066 8fzf:g (3.2) BS01 rna N/A GO:0003723 ... P02359 39030416
    809067 8fzf:h (3.2) BS01 rna N/A GO:0000028 ... P0A7W7 39030416
    809068 8fzf:i (3.2) BS01 rna N/A GO:0000049 ... P0A7X3 39030416
    809069 8fzf:i (3.2) BS02 rna N/A GO:0000049 ... P0A7X3 39030416
    809070 8fzf:j (3.2) BS01 rna N/A GO:0000049 ... P0A7R5 39030416
    809071 8fzf:k (3.2) BS01 rna N/A GO:0002181 ... P0A7R9 39030416
    809072 8fzf:l (3.2) BS01 rna N/A GO:0000049 ... P0A7S3 39030416
    809073 8fzf:m (3.2) BS01 rna N/A GO:0000049 ... P0A7S9 39030416
    809074 8fzf:n (3.2) BS01 rna N/A GO:0000028 ... P0AG59 39030416
    809075 8fzf:o (3.2) BS01 rna N/A GO:0000028 ... P0ADZ4 39030416
    809076 8fzf:o (3.2) BS02 rna N/A GO:0000028 ... P0ADZ4 39030416
    809077 8fzf:p (3.2) BS01 rna N/A GO:0000028 ... P0A7T3 39030416
    809078 8fzf:q (3.2) BS01 rna N/A GO:0000028 ... P0AG63 39030416
    809079 8fzf:r (3.2) BS01 rna N/A GO:0002181 ... P0A7T7 39030416
    809080 8fzf:s (3.2) BS01 rna N/A GO:0000028 ... P0A7U3 39030416
    809081 8fzf:t (3.2) BS01 rna N/A GO:0000028 ... P0A7U7 39030416
    809082 8fzf:u (3.2) BS01 rna N/A GO:0000028 ... P68679 39030416
    809083 8fzf:v (3.2) BS01 rna N/A GO:0003924 ... P0A7I4 39030416
    809084 8fzf:v (3.2) BS02 rna N/A GO:0003924 ... P0A7I4 39030416
    809085 8fzf:v (3.2) BS03 G4P N/A GO:0003924 ... P0A7I4 39030416
    809086 8fzg:1 (3.1) BS01 rna N/A GO:0000027 ... P0A7M6 39030416
    809087 8fzg:2 (3.1) BS01 rna N/A GO:0000027 ... P0AG51 39030416
    809088 8fzg:3 (3.1) BS01 rna N/A GO:0002181 ... P0A7M9 39030416
    809089 8fzg:3 (3.1) BS02 rna N/A GO:0002181 ... P0A7M9 39030416
    809090 8fzg:3 (3.1) BS03 ZN N/A GO:0002181 ... P0A7M9 39030416
    809091 8fzg:4 (3.1) BS01 rna N/A GO:0000027 ... P0A7N4 39030416
    809092 8fzg:5 (3.1) BS01 rna N/A GO:0000027 ... P0A7N9 39030416
    809093 8fzg:6 (3.1) BS01 rna N/A GO:0002181 ... P0A7P5 39030416
    809094 8fzg:7 (3.1) BS01 rna N/A GO:0002181 ... P0A7Q1 39030416
    809095 8fzg:8 (3.1) BS01 rna N/A GO:0002181 ... P0A7Q6 39030416
    809096 8fzg:8 (3.1) BS02 ZN N/A GO:0002181 ... P0A7Q6 39030416
    809097 8fzg:C (3.1) BS01 rna N/A GO:0000027 ... P60422 39030416
    809098 8fzg:C (3.1) BS02 MG N/A GO:0000027 ... P60422 39030416
    809099 8fzg:D (3.1) BS01 rna N/A GO:0000027 ... P60438 39030416
    809100 8fzg:E (3.1) BS01 rna N/A GO:0001070 ... P60723 39030416
    809101 8fzg:F (3.1) BS01 rna N/A GO:0000027 ... P62399 39030416
    809102 8fzg:F (3.1) BS02 rna N/A GO:0000027 ... P62399 39030416
    809103 8fzg:F (3.1) BS03 rna N/A GO:0000027 ... P62399 39030416
    809104 8fzg:G (3.1) BS01 rna N/A GO:0000027 ... P0AG55 39030416
    809105 8fzg:H (3.1) BS01 rna N/A GO:0002181 ... P0A7R1 39030416
    809106 8fzg:I (3.1) BS01 rna N/A GO:0002181 ... P0A7J3 39030416
    809107 8fzg:J (3.1) BS01 rna N/A GO:0000027 ... P0A7J7 39030416
    809108 8fzg:L (3.1) BS01 rna N/A GO:0002181 ... P0AA10 39030416
    809109 8fzg:M (3.1) BS01 rna N/A GO:0002181 ... P0ADY3 39030416
    809110 8fzg:M (3.1) BS02 rna N/A GO:0002181 ... P0ADY3 39030416
    809111 8fzg:N (3.1) BS01 rna N/A GO:0002181 ... P02413 39030416
    809112 8fzg:O (3.1) BS01 rna N/A GO:0000027 ... P0ADY7 39030416
    809113 8fzg:P (3.1) BS01 rna N/A GO:0000027 ... P0AG44 39030416
    809114 8fzg:Q (3.1) BS01 rna N/A GO:0002181 ... P0C018 39030416
    809115 8fzg:Q (3.1) BS02 rna N/A GO:0002181 ... P0C018 39030416
    809116 8fzg:R (3.1) BS01 rna N/A GO:0000027 ... P0A7K6 39030416
    809117 8fzg:R (3.1) BS02 rna N/A GO:0000027 ... P0A7K6 39030416
    809118 8fzg:S (3.1) BS01 rna N/A GO:0000027 ... P0A7L3 39030416
    809119 8fzg:T (3.1) BS01 rna N/A GO:0002181 ... P0AG48 39030416
    809120 8fzg:U (3.1) BS01 rna N/A GO:0002181 ... P61175 39030416
    809121 8fzg:V (3.1) BS01 rna N/A GO:0000027 ... P0ADZ0 39030416
    809122 8fzg:W (3.1) BS01 rna N/A GO:0000027 ... P60624 39030416
    809123 8fzg:X (3.1) BS01 rna N/A GO:0000027 ... P68919 39030416
    809124 8fzg:Y (3.1) BS01 rna N/A GO:0000027 ... P0A7L8 39030416
    809125 8fzg:Y (3.1) BS02 rna N/A GO:0000027 ... P0A7L8 39030416
    809126 8fzg:Z (3.1) BS01 rna N/A GO:0000027 ... P0A7M2 39030416
    809127 8fzg:b (3.1) BS01 rna N/A GO:0000028 ... P0A7V0 39030416
    809128 8fzg:c (3.1) BS01 rna N/A GO:0000028 ... P0A7V3 39030416
    809129 8fzg:d (3.1) BS01 rna N/A GO:0000028 ... P0A7V8 39030416
    809130 8fzg:e (3.1) BS01 rna N/A GO:0000028 ... P0A7W1 39030416
    809131 8fzg:f (3.1) BS01 rna N/A GO:0002181 ... P02358 39030416
    809132 8fzg:g (3.1) BS01 rna N/A GO:0003723 ... P02359 39030416
    809133 8fzg:g (3.1) BS02 rna N/A GO:0003723 ... P02359 39030416
    809134 8fzg:h (3.1) BS01 rna N/A GO:0000028 ... P0A7W7 39030416
    809135 8fzg:i (3.1) BS01 rna N/A GO:0000049 ... P0A7X3 39030416
    809136 8fzg:i (3.1) BS02 rna N/A GO:0000049 ... P0A7X3 39030416
    809137 8fzg:j (3.1) BS01 rna N/A GO:0000049 ... P0A7R5 39030416
    809138 8fzg:k (3.1) BS01 rna N/A GO:0002181 ... P0A7R9 39030416
    809139 8fzg:l (3.1) BS01 rna N/A GO:0000049 ... P0A7S3 39030416
    809140 8fzg:m (3.1) BS01 rna N/A GO:0000049 ... P0A7S9 39030416
    809141 8fzg:m (3.1) BS02 rna N/A GO:0000049 ... P0A7S9 39030416
    809142 8fzg:n (3.1) BS01 rna N/A GO:0000028 ... P0AG59 39030416
    809143 8fzg:o (3.1) BS01 rna N/A GO:0000028 ... P0ADZ4 39030416
    809144 8fzg:o (3.1) BS02 rna N/A GO:0000028 ... P0ADZ4 39030416
    809145 8fzg:p (3.1) BS01 rna N/A GO:0000028 ... P0A7T3 39030416
    809146 8fzg:q (3.1) BS01 rna N/A GO:0000028 ... P0AG63 39030416
    809147 8fzg:r (3.1) BS01 rna N/A GO:0002181 ... P0A7T7 39030416
    809148 8fzg:s (3.1) BS01 rna N/A GO:0000028 ... P0A7U3 39030416
    809149 8fzg:t (3.1) BS01 rna N/A GO:0000028 ... P0A7U7 39030416
    809150 8fzg:u (3.1) BS01 rna N/A GO:0000028 ... P68679 39030416
    809151 8fzg:v (3.1) BS01 rna N/A GO:0003924 ... P0A7I4 39030416
    809152 8fzg:w (3.1) BS01 rna N/A GO:0003747 ... P0A7I0 39030416
    809153 8fzg:w (3.1) BS02 rna N/A GO:0003747 ... P0A7I0 39030416
    809154 8fzg:w (3.1) BS03 rna N/A GO:0003747 ... P0A7I0 39030416
    809155 8fzh:1 (2.9) BS01 rna N/A GO:0000027 ... P0A7M6 39030416
    809156 8fzh:2 (2.9) BS01 rna N/A GO:0000027 ... P0AG51 39030416
    809157 8fzh:3 (2.9) BS01 rna N/A GO:0002181 ... P0A7M9 39030416
    809158 8fzh:3 (2.9) BS02 ZN N/A GO:0002181 ... P0A7M9 39030416
    809159 8fzh:4 (2.9) BS01 rna N/A GO:0000027 ... P0A7N4 39030416
    809160 8fzh:5 (2.9) BS01 rna N/A GO:0000027 ... P0A7N9 39030416
    809161 8fzh:6 (2.9) BS01 rna N/A GO:0002181 ... P0A7P5 39030416
    809162 8fzh:7 (2.9) BS01 rna N/A GO:0002181 ... P0A7Q1 39030416
    809163 8fzh:8 (2.9) BS01 rna N/A GO:0002181 ... P0A7Q6 39030416
    809164 8fzh:8 (2.9) BS02 ZN N/A GO:0002181 ... P0A7Q6 39030416
    809165 8fzh:C (2.9) BS01 rna N/A GO:0000027 ... P60422 39030416
    809166 8fzh:C (2.9) BS02 MG N/A GO:0000027 ... P60422 39030416
    809167 8fzh:D (2.9) BS01 rna N/A GO:0000027 ... P60438 39030416
    809168 8fzh:E (2.9) BS01 rna N/A GO:0001070 ... P60723 39030416
    809169 8fzh:F (2.9) BS01 rna N/A GO:0000027 ... P62399 39030416
    809170 8fzh:F (2.9) BS02 rna N/A GO:0000027 ... P62399 39030416
    809171 8fzh:F (2.9) BS03 rna N/A GO:0000027 ... P62399 39030416
    809172 8fzh:G (2.9) BS01 rna N/A GO:0000027 ... P0AG55 39030416
    809173 8fzh:H (2.9) BS01 rna N/A GO:0002181 ... P0A7R1 39030416
    809174 8fzh:I (2.9) BS01 rna N/A GO:0002181 ... P0A7J3 39030416
    809175 8fzh:J (2.9) BS01 rna N/A GO:0000027 ... P0A7J7 39030416
    809176 8fzh:L (2.9) BS01 rna N/A GO:0002181 ... P0AA10 39030416
    809177 8fzh:M (2.9) BS01 rna N/A GO:0002181 ... P0ADY3 39030416
    809178 8fzh:N (2.9) BS01 rna N/A GO:0002181 ... P02413 39030416
    809179 8fzh:O (2.9) BS01 rna N/A GO:0000027 ... P0ADY7 39030416
    809180 8fzh:P (2.9) BS01 rna N/A GO:0000027 ... P0AG44 39030416
    809181 8fzh:Q (2.9) BS01 rna N/A GO:0002181 ... P0C018 39030416
    809182 8fzh:Q (2.9) BS02 rna N/A GO:0002181 ... P0C018 39030416
    809183 8fzh:R (2.9) BS01 rna N/A GO:0000027 ... P0A7K6 39030416
    809184 8fzh:R (2.9) BS02 rna N/A GO:0000027 ... P0A7K6 39030416
    809185 8fzh:S (2.9) BS01 rna N/A GO:0000027 ... P0A7L3 39030416
    809186 8fzh:T (2.9) BS01 rna N/A GO:0002181 ... P0AG48 39030416
    809187 8fzh:U (2.9) BS01 rna N/A GO:0002181 ... P61175 39030416
    809188 8fzh:V (2.9) BS01 rna N/A GO:0000027 ... P0ADZ0 39030416
    809189 8fzh:W (2.9) BS01 rna N/A GO:0000027 ... P60624 39030416
    809190 8fzh:X (2.9) BS01 rna N/A GO:0000027 ... P68919 39030416
    809191 8fzh:Y (2.9) BS01 rna N/A GO:0000027 ... P0A7L8 39030416
    809192 8fzh:Y (2.9) BS02 rna N/A GO:0000027 ... P0A7L8 39030416
    809193 8fzh:Z (2.9) BS01 rna N/A GO:0000027 ... P0A7M2 39030416
    809194 8fzh:b (2.9) BS01 rna N/A GO:0000028 ... P0A7V0 39030416
    809195 8fzh:c (2.9) BS01 rna N/A GO:0000028 ... P0A7V3 39030416
    809196 8fzh:d (2.9) BS01 rna N/A GO:0000028 ... P0A7V8 39030416
    809197 8fzh:e (2.9) BS01 rna N/A GO:0000028 ... P0A7W1 39030416
    809198 8fzh:f (2.9) BS01 rna N/A GO:0002181 ... P02358 39030416
    809199 8fzh:g (2.9) BS01 rna N/A GO:0003723 ... P02359 39030416
    809200 8fzh:g (2.9) BS02 rna N/A GO:0003723 ... P02359 39030416

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).