SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    809201 8fzh:h (2.9) BS01 rna N/A GO:0000028 ... P0A7W7 39030416
    809202 8fzh:i (2.9) BS01 rna N/A GO:0000049 ... P0A7X3 39030416
    809203 8fzh:i (2.9) BS02 rna N/A GO:0000049 ... P0A7X3 39030416
    809204 8fzh:j (2.9) BS01 rna N/A GO:0000049 ... P0A7R5 39030416
    809205 8fzh:k (2.9) BS01 rna N/A GO:0002181 ... P0A7R9 39030416
    809206 8fzh:l (2.9) BS01 rna N/A GO:0000049 ... P0A7S3 39030416
    809207 8fzh:m (2.9) BS01 rna N/A GO:0000049 ... P0A7S9 39030416
    809208 8fzh:m (2.9) BS02 rna N/A GO:0000049 ... P0A7S9 39030416
    809209 8fzh:n (2.9) BS01 rna N/A GO:0000028 ... P0AG59 39030416
    809210 8fzh:o (2.9) BS01 rna N/A GO:0000028 ... P0ADZ4 39030416
    809211 8fzh:o (2.9) BS02 rna N/A GO:0000028 ... P0ADZ4 39030416
    809212 8fzh:p (2.9) BS01 rna N/A GO:0000028 ... P0A7T3 39030416
    809213 8fzh:q (2.9) BS01 rna N/A GO:0000028 ... P0AG63 39030416
    809214 8fzh:r (2.9) BS01 rna N/A GO:0002181 ... P0A7T7 39030416
    809215 8fzh:s (2.9) BS01 rna N/A GO:0000028 ... P0A7U3 39030416
    809216 8fzh:t (2.9) BS01 rna N/A GO:0000028 ... P0A7U7 39030416
    809217 8fzh:u (2.9) BS01 rna N/A GO:0000028 ... P68679 39030416
    809218 8fzh:w (2.9) BS01 rna N/A GO:0003747 ... P0A7I0 39030416
    809219 8fzh:w (2.9) BS02 rna N/A GO:0003747 ... P0A7I0 39030416
    809220 8fzh:w (2.9) BS03 rna N/A GO:0003747 ... P0A7I0 39030416
    809221 8fzh:w (2.9) BS04 rna N/A GO:0003747 ... P0A7I0 39030416
    809222 8fzi:1 (3.1) BS01 rna N/A GO:0000027 ... P0A7M6 39030416
    809223 8fzi:2 (3.1) BS01 rna N/A GO:0000027 ... P0AG51 39030416
    809224 8fzi:3 (3.1) BS01 rna N/A GO:0002181 ... P0A7M9 39030416
    809225 8fzi:3 (3.1) BS02 ZN N/A GO:0002181 ... P0A7M9 39030416
    809226 8fzi:4 (3.1) BS01 rna N/A GO:0000027 ... P0A7N4 39030416
    809227 8fzi:5 (3.1) BS01 rna N/A GO:0000027 ... P0A7N9 39030416
    809228 8fzi:6 (3.1) BS01 rna N/A GO:0002181 ... P0A7P5 39030416
    809229 8fzi:7 (3.1) BS01 rna N/A GO:0002181 ... P0A7Q1 39030416
    809230 8fzi:8 (3.1) BS01 rna N/A GO:0002181 ... P0A7Q6 39030416
    809231 8fzi:8 (3.1) BS02 ZN N/A GO:0002181 ... P0A7Q6 39030416
    809232 8fzi:C (3.1) BS01 rna N/A GO:0000027 ... P60422 39030416
    809233 8fzi:C (3.1) BS02 rna N/A GO:0000027 ... P60422 39030416
    809234 8fzi:D (3.1) BS01 rna N/A GO:0000027 ... P60438 39030416
    809235 8fzi:E (3.1) BS01 rna N/A GO:0001070 ... P60723 39030416
    809236 8fzi:F (3.1) BS01 rna N/A GO:0000027 ... P62399 39030416
    809237 8fzi:F (3.1) BS02 rna N/A GO:0000027 ... P62399 39030416
    809238 8fzi:G (3.1) BS01 rna N/A GO:0000027 ... P0AG55 39030416
    809239 8fzi:I (3.1) BS01 rna N/A GO:0002181 ... P0A7J3 39030416
    809240 8fzi:J (3.1) BS01 rna N/A GO:0000027 ... P0A7J7 39030416
    809241 8fzi:L (3.1) BS01 rna N/A GO:0002181 ... P0AA10 39030416
    809242 8fzi:M (3.1) BS01 rna N/A GO:0002181 ... P0ADY3 39030416
    809243 8fzi:M (3.1) BS02 rna N/A GO:0002181 ... P0ADY3 39030416
    809244 8fzi:N (3.1) BS01 rna N/A GO:0002181 ... P02413 39030416
    809245 8fzi:N (3.1) BS02 MG N/A GO:0002181 ... P02413 39030416
    809246 8fzi:O (3.1) BS01 rna N/A GO:0000027 ... P0ADY7 39030416
    809247 8fzi:P (3.1) BS01 rna N/A GO:0000027 ... P0AG44 39030416
    809248 8fzi:Q (3.1) BS01 rna N/A GO:0002181 ... P0C018 39030416
    809249 8fzi:Q (3.1) BS02 rna N/A GO:0002181 ... P0C018 39030416
    809250 8fzi:R (3.1) BS01 rna N/A GO:0000027 ... P0A7K6 39030416
    809251 8fzi:R (3.1) BS02 rna N/A GO:0000027 ... P0A7K6 39030416
    809252 8fzi:S (3.1) BS01 rna N/A GO:0000027 ... P0A7L3 39030416
    809253 8fzi:T (3.1) BS01 rna N/A GO:0002181 ... P0AG48 39030416
    809254 8fzi:U (3.1) BS01 rna N/A GO:0002181 ... P61175 39030416
    809255 8fzi:V (3.1) BS01 rna N/A GO:0000027 ... P0ADZ0 39030416
    809256 8fzi:W (3.1) BS01 rna N/A GO:0000027 ... P60624 39030416
    809257 8fzi:X (3.1) BS01 rna N/A GO:0000027 ... P68919 39030416
    809258 8fzi:Y (3.1) BS01 rna N/A GO:0000027 ... P0A7L8 39030416
    809259 8fzi:Y (3.1) BS02 rna N/A GO:0000027 ... P0A7L8 39030416
    809260 8fzi:Z (3.1) BS01 rna N/A GO:0000027 ... P0A7M2 39030416
    809261 8fzi:b (3.1) BS01 rna N/A GO:0000028 ... P0A7V0 39030416
    809262 8fzi:c (3.1) BS01 rna N/A GO:0000028 ... P0A7V3 39030416
    809263 8fzi:d (3.1) BS01 rna N/A GO:0000028 ... P0A7V8 39030416
    809264 8fzi:e (3.1) BS01 rna N/A GO:0000028 ... P0A7W1 39030416
    809265 8fzi:f (3.1) BS01 rna N/A GO:0002181 ... P02358 39030416
    809266 8fzi:g (3.1) BS01 rna N/A GO:0003723 ... P02359 39030416
    809267 8fzi:h (3.1) BS01 rna N/A GO:0000028 ... P0A7W7 39030416
    809268 8fzi:i (3.1) BS01 rna N/A GO:0000049 ... P0A7X3 39030416
    809269 8fzi:j (3.1) BS01 rna N/A GO:0000049 ... P0A7R5 39030416
    809270 8fzi:k (3.1) BS01 rna N/A GO:0002181 ... P0A7R9 39030416
    809271 8fzi:l (3.1) BS01 rna N/A GO:0000049 ... P0A7S3 39030416
    809272 8fzi:m (3.1) BS01 rna N/A GO:0000049 ... P0A7S9 39030416
    809273 8fzi:n (3.1) BS01 rna N/A GO:0000028 ... P0AG59 39030416
    809274 8fzi:o (3.1) BS01 rna N/A GO:0000028 ... P0ADZ4 39030416
    809275 8fzi:o (3.1) BS02 rna N/A GO:0000028 ... P0ADZ4 39030416
    809276 8fzi:p (3.1) BS01 rna N/A GO:0000028 ... P0A7T3 39030416
    809277 8fzi:q (3.1) BS01 rna N/A GO:0000028 ... P0AG63 39030416
    809278 8fzi:r (3.1) BS01 rna N/A GO:0002181 ... P0A7T7 39030416
    809279 8fzi:s (3.1) BS01 rna N/A GO:0000028 ... P0A7U3 39030416
    809280 8fzi:t (3.1) BS01 rna N/A GO:0000028 ... P0A7U7 39030416
    809281 8fzi:u (3.1) BS01 rna N/A GO:0000028 ... P68679 39030416
    809282 8fzi:v (3.1) BS01 rna N/A GO:0003924 ... P0A7I4 39030416
    809283 8fzi:v (3.1) BS02 rna N/A GO:0003924 ... P0A7I4 39030416
    809284 8fzj:1 (3.0) BS01 rna N/A GO:0000027 ... P0A7M6 39030416
    809285 8fzj:2 (3.0) BS01 rna N/A GO:0000027 ... P0AG51 39030416
    809286 8fzj:3 (3.0) BS01 rna N/A GO:0002181 ... P0A7M9 39030416
    809287 8fzj:3 (3.0) BS02 ZN N/A GO:0002181 ... P0A7M9 39030416
    809288 8fzj:4 (3.0) BS01 rna N/A GO:0000027 ... P0A7N4 39030416
    809289 8fzj:5 (3.0) BS01 rna N/A GO:0000027 ... P0A7N9 39030416
    809290 8fzj:6 (3.0) BS01 rna N/A GO:0002181 ... P0A7P5 39030416
    809291 8fzj:7 (3.0) BS01 rna N/A GO:0002181 ... P0A7Q1 39030416
    809292 8fzj:8 (3.0) BS01 rna N/A GO:0002181 ... P0A7Q6 39030416
    809293 8fzj:8 (3.0) BS02 ZN N/A GO:0002181 ... P0A7Q6 39030416
    809294 8fzj:C (3.0) BS01 rna N/A GO:0000027 ... P60422 39030416
    809295 8fzj:C (3.0) BS02 rna N/A GO:0000027 ... P60422 39030416
    809296 8fzj:C (3.0) BS03 MG N/A GO:0000027 ... P60422 39030416
    809297 8fzj:C (3.0) BS04 MG N/A GO:0000027 ... P60422 39030416
    809298 8fzj:D (3.0) BS01 rna N/A GO:0000027 ... P60438 39030416
    809299 8fzj:D (3.0) BS02 MG N/A GO:0000027 ... P60438 39030416
    809300 8fzj:D (3.0) BS03 MG N/A GO:0000027 ... P60438 39030416
    809301 8fzj:E (3.0) BS01 rna N/A GO:0001070 ... P60723 39030416
    809302 8fzj:F (3.0) BS01 rna N/A GO:0000027 ... P62399 39030416
    809303 8fzj:F (3.0) BS02 rna N/A GO:0000027 ... P62399 39030416
    809304 8fzj:G (3.0) BS01 rna N/A GO:0000027 ... P0AG55 39030416
    809305 8fzj:I (3.0) BS01 rna N/A GO:0002181 ... P0A7J3 39030416
    809306 8fzj:J (3.0) BS01 rna N/A GO:0000027 ... P0A7J7 39030416
    809307 8fzj:L (3.0) BS01 rna N/A GO:0002181 ... P0AA10 39030416
    809308 8fzj:M (3.0) BS01 rna N/A GO:0002181 ... P0ADY3 39030416
    809309 8fzj:M (3.0) BS02 rna N/A GO:0002181 ... P0ADY3 39030416
    809310 8fzj:N (3.0) BS01 rna N/A GO:0002181 ... P02413 39030416
    809311 8fzj:O (3.0) BS01 rna N/A GO:0000027 ... P0ADY7 39030416
    809312 8fzj:P (3.0) BS01 rna N/A GO:0000027 ... P0AG44 39030416
    809313 8fzj:Q (3.0) BS01 rna N/A GO:0002181 ... P0C018 39030416
    809314 8fzj:Q (3.0) BS02 rna N/A GO:0002181 ... P0C018 39030416
    809315 8fzj:R (3.0) BS01 rna N/A GO:0000027 ... P0A7K6 39030416
    809316 8fzj:S (3.0) BS01 rna N/A GO:0000027 ... P0A7L3 39030416
    809317 8fzj:T (3.0) BS01 rna N/A GO:0002181 ... P0AG48 39030416
    809318 8fzj:U (3.0) BS01 rna N/A GO:0002181 ... P61175 39030416
    809319 8fzj:V (3.0) BS01 rna N/A GO:0000027 ... P0ADZ0 39030416
    809320 8fzj:V (3.0) BS02 MG N/A GO:0000027 ... P0ADZ0 39030416
    809321 8fzj:W (3.0) BS01 rna N/A GO:0000027 ... P60624 39030416
    809322 8fzj:X (3.0) BS01 rna N/A GO:0000027 ... P68919 39030416
    809323 8fzj:Y (3.0) BS01 rna N/A GO:0000027 ... P0A7L8 39030416
    809324 8fzj:Y (3.0) BS02 rna N/A GO:0000027 ... P0A7L8 39030416
    809325 8fzj:Z (3.0) BS01 rna N/A GO:0000027 ... P0A7M2 39030416
    809326 8fzj:b (3.0) BS01 rna N/A GO:0000028 ... P0A7V0 39030416
    809327 8fzj:c (3.0) BS01 rna N/A GO:0000028 ... P0A7V3 39030416
    809328 8fzj:d (3.0) BS01 rna N/A GO:0000028 ... P0A7V8 39030416
    809329 8fzj:e (3.0) BS01 rna N/A GO:0000028 ... P0A7W1 39030416
    809330 8fzj:f (3.0) BS01 rna N/A GO:0002181 ... P02358 39030416
    809331 8fzj:g (3.0) BS01 rna N/A GO:0003723 ... P02359 39030416
    809332 8fzj:h (3.0) BS01 rna N/A GO:0000028 ... P0A7W7 39030416
    809333 8fzj:i (3.0) BS01 rna N/A GO:0000049 ... P0A7X3 39030416
    809334 8fzj:j (3.0) BS01 rna N/A GO:0000049 ... P0A7R5 39030416
    809335 8fzj:k (3.0) BS01 rna N/A GO:0002181 ... P0A7R9 39030416
    809336 8fzj:l (3.0) BS01 rna N/A GO:0000049 ... P0A7S3 39030416
    809337 8fzj:m (3.0) BS01 rna N/A GO:0000049 ... P0A7S9 39030416
    809338 8fzj:n (3.0) BS01 rna N/A GO:0000028 ... P0AG59 39030416
    809339 8fzj:o (3.0) BS01 rna N/A GO:0000028 ... P0ADZ4 39030416
    809340 8fzj:o (3.0) BS02 rna N/A GO:0000028 ... P0ADZ4 39030416
    809341 8fzj:p (3.0) BS01 rna N/A GO:0000028 ... P0A7T3 39030416
    809342 8fzj:q (3.0) BS01 rna N/A GO:0000028 ... P0AG63 39030416
    809343 8fzj:r (3.0) BS01 rna N/A GO:0002181 ... P0A7T7 39030416
    809344 8fzj:s (3.0) BS01 rna N/A GO:0000028 ... P0A7U3 39030416
    809345 8fzj:t (3.0) BS01 rna N/A GO:0000028 ... P0A7U7 39030416
    809346 8fzj:u (3.0) BS01 rna N/A GO:0000028 ... P68679 39030416
    809347 8fzj:v (3.0) BS01 rna N/A GO:0003924 ... P0A7I4 39030416
    809348 8fzj:v (3.0) BS02 rna N/A GO:0003924 ... P0A7I4 39030416
    809349 8fzk:C (2.1) BS01 MG ? GO:0005737 ... P52292 N/A
    809350 8fzm:A (3.0) BS01 peptide ? GO:0005737 ... O00629 N/A
    809351 8fzm:C (3.0) BS01 peptide ? GO:0005737 ... O00629 N/A
    809352 8fzq:A (4.3) BS01 MG 5.6.1.6 GO:0005254 ... P13569 36949202
    809353 8fzq:A (4.3) BS02 MG 5.6.1.6 GO:0005254 ... P13569 36949202
    809354 8fzq:A (4.3) BS03 ATP 5.6.1.6 GO:0005254 ... P13569 36949202
    809355 8fzq:A (4.3) BS04 ATP 5.6.1.6 GO:0005254 ... P13569 36949202
    809356 8fzr:A (3.6) BS01 rna 2.3.2.8 GO:0004057 ... P16639 37076488
    809357 8fzr:A (3.6) BS02 ZN 2.3.2.8 GO:0004057 ... P16639 37076488
    809358 8fzt:E (3.03) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 N/A
    809359 8fzt:E (3.03) BS02 rna 3.1.-.- GO:0003676 ... Q99ZW2 N/A
    809360 8fzt:E (3.03) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 N/A
    809361 8fzv:A (3.29) BS01 MG ? GO:0043565 ... P41212
    P58335
    37747038
    809362 8g00:I (3.4) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 37264140
    809363 8g00:I (3.4) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 37264140
    809364 8g00:I (3.4) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 37264140
    809365 8g00:J (3.4) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    809366 8g00:J (3.4) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    809367 8g00:J (3.4) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    809368 8g00:J (3.4) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    809369 8g04:B (3.4) BS01 MAN ? GO:0001780 ... P40238 37633268
    809370 8g04:B (3.4) BS02 MAN ? GO:0001780 ... P40238 37633268
    809371 8g04:C (3.4) BS01 MAN ? GO:0001780 ... P40238 37633268
    809372 8g05:R (3.0) BS01 YI9 ? GO:0001604 ... Q9NQS5 37709767
    809373 8g05:R (3.0) BS02 CLR ? GO:0001604 ... Q9NQS5 37709767
    809374 8g07:1 (2.8) BS01 SQC ? GO:0005886 ... A0R205 37377118
    809375 8g07:9 (2.8) BS01 SQC ? GO:0005886 ... A0R205 37377118
    809376 8g07:a (2.8) BS01 SQC ? GO:0005886 ... A0R206 37377118
    809377 8g08:A (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    809378 8g08:B (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    809379 8g08:C (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    809380 8g08:D (2.8) BS01 PO4 7.1.2.2 GO:0005524 ... A0R200 37377118
    809381 8g08:F (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0R200 37377118
    809382 8g09:A (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    809383 8g09:B (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    809384 8g09:C (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    809385 8g09:D (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... A0R200 37377118
    809386 8g0a:1 (2.9) BS01 SQC ? GO:0005886 ... A0R205 37377118
    809387 8g0a:2 (2.9) BS01 SQC ? GO:0005886 ... A0R205 37377118
    809388 8g0a:A (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    809389 8g0a:A (2.9) BS02 MG 7.1.2.2 GO:0005524 ... A0R202 37377118
    809390 8g0a:B (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    809391 8g0a:B (2.9) BS02 MG 7.1.2.2 GO:0005524 ... A0R202 37377118
    809392 8g0a:C (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    809393 8g0a:E (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0R200 37377118
    809394 8g0a:E (2.9) BS02 MG 7.1.2.2 GO:0005524 ... A0R200 37377118
    809395 8g0a:F (2.9) BS01 PO4 7.1.2.2 GO:0005524 ... A0R200 37377118
    809396 8g0a:a (2.9) BS01 SQC ? GO:0005886 ... A0R206 37377118
    809397 8g0b:1 (2.8) BS01 YGR ? GO:0005886 ... A0R205 37377118
    809398 8g0b:1 (2.8) BS02 YGR ? GO:0005886 ... A0R205 37377118
    809399 8g0b:2 (2.8) BS01 YGR ? GO:0005886 ... A0R205 37377118
    809400 8g0b:4 (2.8) BS01 YGR ? GO:0005886 ... A0R205 37377118

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).