SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    809401 8fl3:SA (2.53) BS02 rna ? GO:0002181 ... P36578 37410842
    809402 8fl3:SB (2.53) BS01 rna ? GO:0000027 ... P46777 37410842
    809403 8fl3:SB (2.53) BS02 rna ? GO:0000027 ... P46777 37410842
    809404 8fl3:SC (2.53) BS01 rna ? GO:0002181 ... Q02878 37410842
    809405 8fl3:SD (2.53) BS01 rna ? GO:0000463 ... P18124 37410842
    809406 8fl3:SD (2.53) BS02 rna ? GO:0000463 ... P18124 37410842
    809407 8fl3:SE (2.53) BS01 rna ? GO:0000470 ... P62424 37410842
    809408 8fl3:SE (2.53) BS02 rna ? GO:0000470 ... P62424 37410842
    809409 8fl3:SF (2.53) BS01 rna ? GO:0002181 ... P62917 37410842
    809410 8fl3:SF (2.53) BS02 MG ? GO:0002181 ... P62917 37410842
    809411 8fl3:SG (2.53) BS01 rna ? GO:0002181 ... P32969 37410842
    809412 8fl3:SI (2.53) BS01 rna ? GO:0000463 ... Q6DKI1 37410842
    809413 8fl3:SI (2.53) BS02 rna ? GO:0000463 ... Q6DKI1 37410842
    809414 8fl3:SK (2.53) BS01 rna ? GO:0000054 ... P56537 37410842
    809415 8fl3:SM (2.53) BS01 rna ? GO:0000463 ... O00541 37410842
    809416 8fl3:SM (2.53) BS02 rna ? GO:0000463 ... O00541 37410842
    809417 8fl3:SQ (2.53) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    809418 8fl3:SR (2.53) BS01 rna ? GO:0001649 ... Q9BZE4 37410842
    809419 8fl3:SR (2.53) BS02 rna ? GO:0001649 ... Q9BZE4 37410842
    809420 8fl3:SR (2.53) BS03 GDP ? GO:0001649 ... Q9BZE4 37410842
    809421 8fl3:SR (2.53) BS04 MG ? GO:0001649 ... Q9BZE4 37410842
    809422 8fl3:SV (2.53) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    809423 8fl3:SV (2.53) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    809424 8fl4:BA (2.89) BS01 rna ? GO:0002181 ... P30050 37410842
    809425 8fl4:BB (2.89) BS01 rna ? GO:0002181 ... P62906 37410842
    809426 8fl4:L5 (2.89) BS01 rna ? GO:0000027 ... P62913 37410842
    809427 8fl4:L5 (2.89) BS02 rna ? GO:0000027 ... P62913 37410842
    809428 8fl4:L6 (2.89) BS01 rna ? GO:0002181 ... P26373 37410842
    809429 8fl4:L6 (2.89) BS02 rna ? GO:0002181 ... P26373 37410842
    809430 8fl4:L6 (2.89) BS03 MG ? GO:0002181 ... P26373 37410842
    809431 8fl4:L7 (2.89) BS01 rna ? GO:0002181 ... P40429 37410842
    809432 8fl4:L8 (2.89) BS01 rna ? GO:0002181 ... P50914 37410842
    809433 8fl4:L9 (2.89) BS01 rna ? GO:0002181 ... P61313 37410842
    809434 8fl4:L9 (2.89) BS02 rna ? GO:0002181 ... P61313 37410842
    809435 8fl4:LA (2.89) BS01 rna ? GO:0002181 ... P18621 37410842
    809436 8fl4:LA (2.89) BS02 rna ? GO:0002181 ... P18621 37410842
    809437 8fl4:LB (2.89) BS01 rna ? GO:0002181 ... Q07020 37410842
    809438 8fl4:LC (2.89) BS01 rna ? GO:0002181 ... Q02543 37410842
    809439 8fl4:LC (2.89) BS02 rna ? GO:0002181 ... Q02543 37410842
    809440 8fl4:LD (2.89) BS01 rna ? GO:0002181 ... P84098 37410842
    809441 8fl4:LE (2.89) BS01 rna ? GO:0001650 ... P46778 37410842
    809442 8fl4:LE (2.89) BS02 rna ? GO:0001650 ... P46778 37410842
    809443 8fl4:LF (2.89) BS01 rna ? GO:0002181 ... P35268 37410842
    809444 8fl4:LG (2.89) BS01 rna ? GO:0000122 ... P62829 37410842
    809445 8fl4:LH (2.89) BS01 rna ? GO:0002181 ... P62750 37410842
    809446 8fl4:LH (2.89) BS02 rna ? GO:0002181 ... P62750 37410842
    809447 8fl4:LI (2.89) BS01 rna ? GO:0002181 ... P61254 37410842
    809448 8fl4:LI (2.89) BS02 rna ? GO:0002181 ... P61254 37410842
    809449 8fl4:LJ (2.89) BS01 rna ? GO:0002181 ... P61353 37410842
    809450 8fl4:LK (2.89) BS01 rna ? GO:0002181 ... P46776 37410842
    809451 8fl4:LL (2.89) BS01 rna ? GO:0002181 ... P46779 37410842
    809452 8fl4:LN (2.89) BS01 rna ? GO:0002181 ... P39023 37410842
    809453 8fl4:LO (2.89) BS01 rna ? GO:0002181 ... P62888 37410842
    809454 8fl4:LP (2.89) BS01 rna ? GO:0002181 ... P62899 37410842
    809455 8fl4:LQ (2.89) BS01 rna ? GO:0002181 ... P62910 37410842
    809456 8fl4:LQ (2.89) BS02 MG ? GO:0002181 ... P62910 37410842
    809457 8fl4:LR (2.89) BS01 rna ? GO:0002181 ... P49207 37410842
    809458 8fl4:LR (2.89) BS02 ZN ? GO:0002181 ... P49207 37410842
    809459 8fl4:LS (2.89) BS01 rna ? GO:0000463 ... P42766 37410842
    809460 8fl4:LS (2.89) BS02 rna ? GO:0000463 ... P42766 37410842
    809461 8fl4:LT (2.89) BS01 rna ? GO:0002181 ... P18077 37410842
    809462 8fl4:LT (2.89) BS02 MG ? GO:0002181 ... P18077 37410842
    809463 8fl4:LU (2.89) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    809464 8fl4:LW (2.89) BS01 rna ? GO:0000448 ... P61927 37410842
    809465 8fl4:LW (2.89) BS02 rna ? GO:0000448 ... P61927 37410842
    809466 8fl4:LW (2.89) BS03 ZN ? GO:0000448 ... P61927 37410842
    809467 8fl4:LX (2.89) BS01 rna ? GO:0002181 ... P61513 37410842
    809468 8fl4:LX (2.89) BS02 ZN ? GO:0002181 ... P61513 37410842
    809469 8fl4:LY (2.89) BS01 rna ? GO:0002181 ... P63173 37410842
    809470 8fl4:LZ (2.89) BS01 rna ? GO:0002181 ... P62891 37410842
    809471 8fl4:LZ (2.89) BS02 rna ? GO:0002181 ... P62891 37410842
    809472 8fl4:NB (2.89) BS01 rna ? GO:0003723 ... Q9BVP2 37410842
    809473 8fl4:NB (2.89) BS02 rna ? GO:0003723 ... Q9BVP2 37410842
    809474 8fl4:NC (2.89) BS01 rna ? GO:0003723 ... Q13823 37410842
    809475 8fl4:NC (2.89) BS02 GTP ? GO:0003723 ... Q13823 37410842
    809476 8fl4:NC (2.89) BS03 MG ? GO:0003723 ... Q13823 37410842
    809477 8fl4:NF (2.89) BS01 rna ? GO:0000460 ... O95478 37410842
    809478 8fl4:NJ (2.89) BS01 rna ? GO:0005515 ... Q9NVX2 37410842
    809479 8fl4:NK (2.89) BS01 rna ? GO:0003723 ... Q9BRT6 37410842
    809480 8fl4:NL (2.89) BS01 rna ? GO:0000027 ... Q9NZM5 37410842
    809481 8fl4:NL (2.89) BS02 rna ? GO:0000027 ... Q9NZM5 37410842
    809482 8fl4:NP (2.89) BS01 rna ? GO:0003676 ... O00488 37410842
    809483 8fl4:NP (2.89) BS02 ZN ? GO:0003676 ... O00488 37410842
    809484 8fl4:NT (2.89) BS01 rna ? GO:0000055 ... Q9NVU7 37410842
    809485 8fl4:NU (2.89) BS01 peptide ? GO:0000448 ... Q9NXF1 37410842
    809486 8fl4:NU (2.89) BS02 rna ? GO:0000448 ... Q9NXF1 37410842
    809487 8fl4:NY (2.89) BS01 rna ? GO:0000448 ... Q8IZL8 37410842
    809488 8fl4:NZ (2.89) BS01 rna ? GO:0003723 ... Q9H6F5 37410842
    809489 8fl4:NZ (2.89) BS02 rna ? GO:0003723 ... Q9H6F5 37410842
    809490 8fl4:SA (2.89) BS01 rna ? GO:0002181 ... P36578 37410842
    809491 8fl4:SA (2.89) BS02 rna ? GO:0002181 ... P36578 37410842
    809492 8fl4:SB (2.89) BS01 rna ? GO:0000027 ... P46777 37410842
    809493 8fl4:SB (2.89) BS02 rna ? GO:0000027 ... P46777 37410842
    809494 8fl4:SC (2.89) BS01 rna ? GO:0002181 ... Q02878 37410842
    809495 8fl4:SD (2.89) BS01 rna ? GO:0000463 ... P18124 37410842
    809496 8fl4:SD (2.89) BS02 rna ? GO:0000463 ... P18124 37410842
    809497 8fl4:SE (2.89) BS01 rna ? GO:0000470 ... P62424 37410842
    809498 8fl4:SE (2.89) BS02 rna ? GO:0000470 ... P62424 37410842
    809499 8fl4:SF (2.89) BS01 rna ? GO:0002181 ... P62917 37410842
    809500 8fl4:SF (2.89) BS02 MG ? GO:0002181 ... P62917 37410842
    809501 8fl4:SG (2.89) BS01 rna ? GO:0002181 ... P32969 37410842
    809502 8fl4:SK (2.89) BS01 rna ? GO:0000054 ... P56537 37410842
    809503 8fl4:SM (2.89) BS01 rna ? GO:0000463 ... O00541 37410842
    809504 8fl4:SQ (2.89) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    809505 8fl4:SR (2.89) BS01 rna ? GO:0001649 ... Q9BZE4 37410842
    809506 8fl4:SR (2.89) BS02 rna ? GO:0001649 ... Q9BZE4 37410842
    809507 8fl4:SR (2.89) BS03 GDP ? GO:0001649 ... Q9BZE4 37410842
    809508 8fl4:SV (2.89) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    809509 8fl4:SV (2.89) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    809510 8fl6:BA (2.62) BS01 rna ? GO:0002181 ... P30050 37410842
    809511 8fl6:L5 (2.62) BS01 rna ? GO:0000027 ... P62913 37410842
    809512 8fl6:L5 (2.62) BS02 rna ? GO:0000027 ... P62913 37410842
    809513 8fl6:L6 (2.62) BS01 rna ? GO:0002181 ... P26373 37410842
    809514 8fl6:L6 (2.62) BS02 rna ? GO:0002181 ... P26373 37410842
    809515 8fl6:L7 (2.62) BS01 rna ? GO:0002181 ... P40429 37410842
    809516 8fl6:L8 (2.62) BS01 rna ? GO:0002181 ... P50914 37410842
    809517 8fl6:L9 (2.62) BS01 rna ? GO:0002181 ... P61313 37410842
    809518 8fl6:L9 (2.62) BS02 rna ? GO:0002181 ... P61313 37410842
    809519 8fl6:LA (2.62) BS01 rna ? GO:0002181 ... P18621 37410842
    809520 8fl6:LA (2.62) BS02 rna ? GO:0002181 ... P18621 37410842
    809521 8fl6:LB (2.62) BS01 rna ? GO:0002181 ... Q07020 37410842
    809522 8fl6:LC (2.62) BS01 rna ? GO:0002181 ... Q02543 37410842
    809523 8fl6:LC (2.62) BS02 rna ? GO:0002181 ... Q02543 37410842
    809524 8fl6:LD (2.62) BS01 rna ? GO:0002181 ... P84098 37410842
    809525 8fl6:LE (2.62) BS01 rna ? GO:0001650 ... P46778 37410842
    809526 8fl6:LE (2.62) BS02 rna ? GO:0001650 ... P46778 37410842
    809527 8fl6:LF (2.62) BS01 rna ? GO:0002181 ... P35268 37410842
    809528 8fl6:LG (2.62) BS01 rna ? GO:0000122 ... P62829 37410842
    809529 8fl6:LH (2.62) BS01 rna ? GO:0002181 ... P62750 37410842
    809530 8fl6:LH (2.62) BS02 rna ? GO:0002181 ... P62750 37410842
    809531 8fl6:LI (2.62) BS01 rna ? GO:0002181 ... P61254 37410842
    809532 8fl6:LI (2.62) BS02 rna ? GO:0002181 ... P61254 37410842
    809533 8fl6:LJ (2.62) BS01 rna ? GO:0002181 ... P61353 37410842
    809534 8fl6:LK (2.62) BS01 rna ? GO:0002181 ... P46776 37410842
    809535 8fl6:LL (2.62) BS01 rna ? GO:0002181 ... P46779 37410842
    809536 8fl6:LM (2.62) BS01 rna ? GO:0002181 ... P47914 37410842
    809537 8fl6:LN (2.62) BS01 rna ? GO:0002181 ... P39023 37410842
    809538 8fl6:LO (2.62) BS01 rna ? GO:0002181 ... P62888 37410842
    809539 8fl6:LP (2.62) BS01 rna ? GO:0002181 ... P62899 37410842
    809540 8fl6:LQ (2.62) BS01 rna ? GO:0002181 ... P62910 37410842
    809541 8fl6:LQ (2.62) BS02 MG ? GO:0002181 ... P62910 37410842
    809542 8fl6:LR (2.62) BS01 rna ? GO:0002181 ... P49207 37410842
    809543 8fl6:LR (2.62) BS02 ZN ? GO:0002181 ... P49207 37410842
    809544 8fl6:LS (2.62) BS01 rna ? GO:0000463 ... P42766 37410842
    809545 8fl6:LS (2.62) BS02 rna ? GO:0000463 ... P42766 37410842
    809546 8fl6:LT (2.62) BS01 rna ? GO:0002181 ... P18077 37410842
    809547 8fl6:LT (2.62) BS02 MG ? GO:0002181 ... P18077 37410842
    809548 8fl6:LU (2.62) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    809549 8fl6:LV (2.62) BS01 rna ? GO:0002181 ... P83881 37410842
    809550 8fl6:LV (2.62) BS02 ZN ? GO:0002181 ... P83881 37410842
    809551 8fl6:LW (2.62) BS01 rna ? GO:0000448 ... P61927 37410842
    809552 8fl6:LW (2.62) BS02 rna ? GO:0000448 ... P61927 37410842
    809553 8fl6:LW (2.62) BS03 ZN ? GO:0000448 ... P61927 37410842
    809554 8fl6:LX (2.62) BS01 rna ? GO:0002181 ... P61513 37410842
    809555 8fl6:LX (2.62) BS02 ZN ? GO:0002181 ... P61513 37410842
    809556 8fl6:LY (2.62) BS01 rna ? GO:0002181 ... P63173 37410842
    809557 8fl6:LZ (2.62) BS01 rna ? GO:0002181 ... P62891 37410842
    809558 8fl6:LZ (2.62) BS02 rna ? GO:0002181 ... P62891 37410842
    809559 8fl6:NF (2.62) BS01 rna ? GO:0000460 ... O95478 37410842
    809560 8fl6:NK (2.62) BS01 rna ? GO:0003723 ... Q9BRT6 37410842
    809561 8fl6:NL (2.62) BS01 rna ? GO:0000027 ... Q9NZM5 37410842
    809562 8fl6:NP (2.62) BS01 rna ? GO:0003676 ... O00488 37410842
    809563 8fl6:NP (2.62) BS02 ZN ? GO:0003676 ... O00488 37410842
    809564 8fl6:SA (2.62) BS01 rna ? GO:0002181 ... P36578 37410842
    809565 8fl6:SA (2.62) BS02 rna ? GO:0002181 ... P36578 37410842
    809566 8fl6:SB (2.62) BS01 rna ? GO:0000027 ... P46777 37410842
    809567 8fl6:SB (2.62) BS02 rna ? GO:0000027 ... P46777 37410842
    809568 8fl6:SC (2.62) BS01 rna ? GO:0002181 ... Q02878 37410842
    809569 8fl6:SD (2.62) BS01 rna ? GO:0000463 ... P18124 37410842
    809570 8fl6:SD (2.62) BS02 rna ? GO:0000463 ... P18124 37410842
    809571 8fl6:SE (2.62) BS01 rna ? GO:0000470 ... P62424 37410842
    809572 8fl6:SE (2.62) BS02 rna ? GO:0000470 ... P62424 37410842
    809573 8fl6:SF (2.62) BS01 rna ? GO:0002181 ... P62917 37410842
    809574 8fl6:SF (2.62) BS02 MG ? GO:0002181 ... P62917 37410842
    809575 8fl6:SG (2.62) BS01 rna ? GO:0002181 ... P32969 37410842
    809576 8fl6:SH (2.62) BS01 rna ? GO:0000794 ... Q9BYG3 37410842
    809577 8fl6:SI (2.62) BS01 rna ? GO:0000463 ... Q6DKI1 37410842
    809578 8fl6:SI (2.62) BS02 rna ? GO:0000463 ... Q6DKI1 37410842
    809579 8fl6:SI (2.62) BS03 rna ? GO:0000463 ... Q6DKI1 37410842
    809580 8fl6:SK (2.62) BS01 rna ? GO:0000054 ... P56537 37410842
    809581 8fl6:SL (2.62) BS01 rna ? GO:0001649 ... O76021 37410842
    809582 8fl6:SM (2.62) BS01 rna ? GO:0000463 ... O00541 37410842
    809583 8fl6:SM (2.62) BS02 rna ? GO:0000463 ... O00541 37410842
    809584 8fl6:SQ (2.62) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    809585 8fl6:SR (2.62) BS01 rna ? GO:0001649 ... Q9BZE4 37410842
    809586 8fl6:SR (2.62) BS02 rna ? GO:0001649 ... Q9BZE4 37410842
    809587 8fl6:SR (2.62) BS03 GDP ? GO:0001649 ... Q9BZE4 37410842
    809588 8fl6:SV (2.62) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    809589 8fl6:SV (2.62) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    809590 8fl7:BA (2.55) BS01 rna ? GO:0002181 ... P30050 37410842
    809591 8fl7:L5 (2.55) BS01 rna ? GO:0000027 ... P62913 37410842
    809592 8fl7:L5 (2.55) BS02 rna ? GO:0000027 ... P62913 37410842
    809593 8fl7:L6 (2.55) BS01 rna ? GO:0002181 ... P26373 37410842
    809594 8fl7:L6 (2.55) BS02 rna ? GO:0002181 ... P26373 37410842
    809595 8fl7:L7 (2.55) BS01 rna ? GO:0002181 ... P40429 37410842
    809596 8fl7:L8 (2.55) BS01 rna ? GO:0002181 ... P50914 37410842
    809597 8fl7:L9 (2.55) BS01 rna ? GO:0002181 ... P61313 37410842
    809598 8fl7:L9 (2.55) BS02 rna ? GO:0002181 ... P61313 37410842
    809599 8fl7:LA (2.55) BS01 rna ? GO:0002181 ... P18621 37410842
    809600 8fl7:LA (2.55) BS02 rna ? GO:0002181 ... P18621 37410842

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).