SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    809601 8fl7:LB (2.55) BS01 rna ? GO:0002181 ... Q07020 37410842
    809602 8fl7:LC (2.55) BS01 rna ? GO:0002181 ... Q02543 37410842
    809603 8fl7:LC (2.55) BS02 rna ? GO:0002181 ... Q02543 37410842
    809604 8fl7:LD (2.55) BS01 rna ? GO:0002181 ... P84098 37410842
    809605 8fl7:LE (2.55) BS01 rna ? GO:0001650 ... P46778 37410842
    809606 8fl7:LE (2.55) BS02 rna ? GO:0001650 ... P46778 37410842
    809607 8fl7:LF (2.55) BS01 rna ? GO:0002181 ... P35268 37410842
    809608 8fl7:LG (2.55) BS01 rna ? GO:0000122 ... P62829 37410842
    809609 8fl7:LH (2.55) BS01 rna ? GO:0002181 ... P62750 37410842
    809610 8fl7:LH (2.55) BS02 rna ? GO:0002181 ... P62750 37410842
    809611 8fl7:LI (2.55) BS01 rna ? GO:0002181 ... P61254 37410842
    809612 8fl7:LI (2.55) BS02 rna ? GO:0002181 ... P61254 37410842
    809613 8fl7:LJ (2.55) BS01 rna ? GO:0002181 ... P61353 37410842
    809614 8fl7:LK (2.55) BS01 rna ? GO:0002181 ... P46776 37410842
    809615 8fl7:LL (2.55) BS01 rna ? GO:0002181 ... P46779 37410842
    809616 8fl7:LM (2.55) BS01 rna ? GO:0002181 ... P47914 37410842
    809617 8fl7:LN (2.55) BS01 rna ? GO:0002181 ... P39023 37410842
    809618 8fl7:LO (2.55) BS01 rna ? GO:0002181 ... P62888 37410842
    809619 8fl7:LP (2.55) BS01 rna ? GO:0002181 ... P62899 37410842
    809620 8fl7:LQ (2.55) BS01 rna ? GO:0002181 ... P62910 37410842
    809621 8fl7:LQ (2.55) BS02 MG ? GO:0002181 ... P62910 37410842
    809622 8fl7:LR (2.55) BS01 rna ? GO:0002181 ... P49207 37410842
    809623 8fl7:LR (2.55) BS02 MG ? GO:0002181 ... P49207 37410842
    809624 8fl7:LR (2.55) BS03 ZN ? GO:0002181 ... P49207 37410842
    809625 8fl7:LS (2.55) BS01 rna ? GO:0000463 ... P42766 37410842
    809626 8fl7:LS (2.55) BS02 rna ? GO:0000463 ... P42766 37410842
    809627 8fl7:LT (2.55) BS01 rna ? GO:0002181 ... P18077 37410842
    809628 8fl7:LT (2.55) BS02 MG ? GO:0002181 ... P18077 37410842
    809629 8fl7:LU (2.55) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    809630 8fl7:LV (2.55) BS01 rna ? GO:0002181 ... P83881 37410842
    809631 8fl7:LV (2.55) BS02 ZN ? GO:0002181 ... P83881 37410842
    809632 8fl7:LW (2.55) BS01 rna ? GO:0000448 ... P61927 37410842
    809633 8fl7:LW (2.55) BS02 rna ? GO:0000448 ... P61927 37410842
    809634 8fl7:LW (2.55) BS03 ZN ? GO:0000448 ... P61927 37410842
    809635 8fl7:LX (2.55) BS01 rna ? GO:0002181 ... P61513 37410842
    809636 8fl7:LX (2.55) BS02 ZN ? GO:0002181 ... P61513 37410842
    809637 8fl7:LY (2.55) BS01 rna ? GO:0002181 ... P63173 37410842
    809638 8fl7:LZ (2.55) BS01 rna ? GO:0002181 ... P62891 37410842
    809639 8fl7:LZ (2.55) BS02 rna ? GO:0002181 ... P62891 37410842
    809640 8fl7:NF (2.55) BS01 rna ? GO:0000460 ... O95478 37410842
    809641 8fl7:NK (2.55) BS01 rna ? GO:0003723 ... Q9BRT6 37410842
    809642 8fl7:NL (2.55) BS01 rna ? GO:0000027 ... Q9NZM5 37410842
    809643 8fl7:NP (2.55) BS01 rna ? GO:0003676 ... O00488 37410842
    809644 8fl7:NP (2.55) BS02 ZN ? GO:0003676 ... O00488 37410842
    809645 8fl7:SA (2.55) BS01 rna ? GO:0002181 ... P36578 37410842
    809646 8fl7:SA (2.55) BS02 rna ? GO:0002181 ... P36578 37410842
    809647 8fl7:SB (2.55) BS01 rna ? GO:0000027 ... P46777 37410842
    809648 8fl7:SB (2.55) BS02 rna ? GO:0000027 ... P46777 37410842
    809649 8fl7:SC (2.55) BS01 rna ? GO:0002181 ... Q02878 37410842
    809650 8fl7:SD (2.55) BS01 rna ? GO:0000463 ... P18124 37410842
    809651 8fl7:SD (2.55) BS02 rna ? GO:0000463 ... P18124 37410842
    809652 8fl7:SE (2.55) BS01 rna ? GO:0000470 ... P62424 37410842
    809653 8fl7:SE (2.55) BS02 rna ? GO:0000470 ... P62424 37410842
    809654 8fl7:SF (2.55) BS01 rna ? GO:0002181 ... P62917 37410842
    809655 8fl7:SF (2.55) BS02 MG ? GO:0002181 ... P62917 37410842
    809656 8fl7:SG (2.55) BS01 rna ? GO:0002181 ... P32969 37410842
    809657 8fl7:SI (2.55) BS01 rna ? GO:0000463 ... Q6DKI1 37410842
    809658 8fl7:SI (2.55) BS02 rna ? GO:0000463 ... Q6DKI1 37410842
    809659 8fl7:SK (2.55) BS01 rna ? GO:0000054 ... P56537 37410842
    809660 8fl7:SM (2.55) BS01 rna ? GO:0000463 ... O00541 37410842
    809661 8fl7:SM (2.55) BS02 rna ? GO:0000463 ... O00541 37410842
    809662 8fl7:SQ (2.55) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    809663 8fl7:SR (2.55) BS01 rna ? GO:0001649 ... Q9BZE4 37410842
    809664 8fl7:SR (2.55) BS02 rna ? GO:0001649 ... Q9BZE4 37410842
    809665 8fl7:SR (2.55) BS03 GDP ? GO:0001649 ... Q9BZE4 37410842
    809666 8fl7:SR (2.55) BS04 MG ? GO:0001649 ... Q9BZE4 37410842
    809667 8fl7:SV (2.55) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    809668 8fl7:SV (2.55) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    809669 8fl8:A (4.2) BS01 ATP ? GO:0005524 ... P07251 38316880
    809670 8fl8:A (4.2) BS02 ATP ? GO:0005524 ... P07251 38316880
    809671 8fl8:B (4.2) BS01 ATP ? GO:0005524 ... P07251 38316880
    809672 8fl8:C (4.2) BS01 ATP ? GO:0005524 ... P07251 38316880
    809673 8fl8:E (4.2) BS01 ATP 7.1.2.2 GO:0005515 ... P00830 38316880
    809674 8fl8:F (4.2) BS01 ADP 7.1.2.2 GO:0005515 ... P00830 38316880
    809675 8fl9:BA (2.75) BS01 rna ? GO:0002181 ... P30050 37410842
    809676 8fl9:L5 (2.75) BS01 rna ? GO:0000027 ... P62913 37410842
    809677 8fl9:L5 (2.75) BS02 rna ? GO:0000027 ... P62913 37410842
    809678 8fl9:L6 (2.75) BS01 rna ? GO:0002181 ... P26373 37410842
    809679 8fl9:L6 (2.75) BS02 rna ? GO:0002181 ... P26373 37410842
    809680 8fl9:L7 (2.75) BS01 rna ? GO:0002181 ... P40429 37410842
    809681 8fl9:L8 (2.75) BS01 rna ? GO:0002181 ... P50914 37410842
    809682 8fl9:L9 (2.75) BS01 rna ? GO:0002181 ... P61313 37410842
    809683 8fl9:L9 (2.75) BS02 rna ? GO:0002181 ... P61313 37410842
    809684 8fl9:LA (2.75) BS01 rna ? GO:0002181 ... P18621 37410842
    809685 8fl9:LA (2.75) BS02 rna ? GO:0002181 ... P18621 37410842
    809686 8fl9:LB (2.75) BS01 rna ? GO:0002181 ... Q07020 37410842
    809687 8fl9:LC (2.75) BS01 rna ? GO:0002181 ... Q02543 37410842
    809688 8fl9:LC (2.75) BS02 rna ? GO:0002181 ... Q02543 37410842
    809689 8fl9:LD (2.75) BS01 rna ? GO:0002181 ... P84098 37410842
    809690 8fl9:LE (2.75) BS01 rna ? GO:0001650 ... P46778 37410842
    809691 8fl9:LE (2.75) BS02 rna ? GO:0001650 ... P46778 37410842
    809692 8fl9:LF (2.75) BS01 rna ? GO:0002181 ... P35268 37410842
    809693 8fl9:LG (2.75) BS01 rna ? GO:0000122 ... P62829 37410842
    809694 8fl9:LH (2.75) BS01 rna ? GO:0002181 ... P62750 37410842
    809695 8fl9:LH (2.75) BS02 rna ? GO:0002181 ... P62750 37410842
    809696 8fl9:LI (2.75) BS01 rna ? GO:0002181 ... P61254 37410842
    809697 8fl9:LI (2.75) BS02 rna ? GO:0002181 ... P61254 37410842
    809698 8fl9:LJ (2.75) BS01 rna ? GO:0002181 ... P61353 37410842
    809699 8fl9:LK (2.75) BS01 rna ? GO:0002181 ... P46776 37410842
    809700 8fl9:LL (2.75) BS01 rna ? GO:0002181 ... P46779 37410842
    809701 8fl9:LM (2.75) BS01 rna ? GO:0002181 ... P47914 37410842
    809702 8fl9:LN (2.75) BS01 rna ? GO:0002181 ... P39023 37410842
    809703 8fl9:LO (2.75) BS01 rna ? GO:0002181 ... P62888 37410842
    809704 8fl9:LP (2.75) BS01 rna ? GO:0002181 ... P62899 37410842
    809705 8fl9:LQ (2.75) BS01 rna ? GO:0002181 ... P62910 37410842
    809706 8fl9:LR (2.75) BS01 rna ? GO:0002181 ... P49207 37410842
    809707 8fl9:LR (2.75) BS02 ZN ? GO:0002181 ... P49207 37410842
    809708 8fl9:LS (2.75) BS01 rna ? GO:0000463 ... P42766 37410842
    809709 8fl9:LS (2.75) BS02 rna ? GO:0000463 ... P42766 37410842
    809710 8fl9:LT (2.75) BS01 rna ? GO:0002181 ... P18077 37410842
    809711 8fl9:LT (2.75) BS02 MG ? GO:0002181 ... P18077 37410842
    809712 8fl9:LU (2.75) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    809713 8fl9:LV (2.75) BS01 rna ? GO:0002181 ... P83881 37410842
    809714 8fl9:LV (2.75) BS02 ZN ? GO:0002181 ... P83881 37410842
    809715 8fl9:LW (2.75) BS01 rna ? GO:0000448 ... P61927 37410842
    809716 8fl9:LW (2.75) BS02 rna ? GO:0000448 ... P61927 37410842
    809717 8fl9:LW (2.75) BS03 ZN ? GO:0000448 ... P61927 37410842
    809718 8fl9:LX (2.75) BS01 rna ? GO:0002181 ... P61513 37410842
    809719 8fl9:LX (2.75) BS02 ZN ? GO:0002181 ... P61513 37410842
    809720 8fl9:LY (2.75) BS01 rna ? GO:0002181 ... P63173 37410842
    809721 8fl9:LZ (2.75) BS01 rna ? GO:0002181 ... P62891 37410842
    809722 8fl9:LZ (2.75) BS02 rna ? GO:0002181 ... P62891 37410842
    809723 8fl9:NF (2.75) BS01 rna ? GO:0000460 ... O95478 37410842
    809724 8fl9:NK (2.75) BS01 rna ? GO:0003723 ... Q9BRT6 37410842
    809725 8fl9:NP (2.75) BS01 rna ? GO:0003676 ... O00488 37410842
    809726 8fl9:NP (2.75) BS02 ZN ? GO:0003676 ... O00488 37410842
    809727 8fl9:SA (2.75) BS01 rna ? GO:0002181 ... P36578 37410842
    809728 8fl9:SA (2.75) BS02 rna ? GO:0002181 ... P36578 37410842
    809729 8fl9:SB (2.75) BS01 rna ? GO:0000027 ... P46777 37410842
    809730 8fl9:SB (2.75) BS02 rna ? GO:0000027 ... P46777 37410842
    809731 8fl9:SC (2.75) BS01 rna ? GO:0002181 ... Q02878 37410842
    809732 8fl9:SD (2.75) BS01 rna ? GO:0000463 ... P18124 37410842
    809733 8fl9:SD (2.75) BS02 rna ? GO:0000463 ... P18124 37410842
    809734 8fl9:SE (2.75) BS01 rna ? GO:0000470 ... P62424 37410842
    809735 8fl9:SE (2.75) BS02 rna ? GO:0000470 ... P62424 37410842
    809736 8fl9:SF (2.75) BS01 rna ? GO:0002181 ... P62917 37410842
    809737 8fl9:SF (2.75) BS02 MG ? GO:0002181 ... P62917 37410842
    809738 8fl9:SG (2.75) BS01 rna ? GO:0002181 ... P32969 37410842
    809739 8fl9:SK (2.75) BS01 rna ? GO:0000054 ... P56537 37410842
    809740 8fl9:SQ (2.75) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    809741 8fl9:SR (2.75) BS01 rna ? GO:0001649 ... Q9BZE4 37410842
    809742 8fl9:SR (2.75) BS02 rna ? GO:0001649 ... Q9BZE4 37410842
    809743 8fl9:SR (2.75) BS03 GDP ? GO:0001649 ... Q9BZE4 37410842
    809744 8fl9:SR (2.75) BS04 MG ? GO:0001649 ... Q9BZE4 37410842
    809745 8fl9:SV (2.75) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    809746 8fl9:SV (2.75) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    809747 8fla:BA (2.63) BS01 rna ? GO:0002181 ... P30050 37410842
    809748 8fla:L5 (2.63) BS01 rna ? GO:0000027 ... P62913 37410842
    809749 8fla:L5 (2.63) BS02 rna ? GO:0000027 ... P62913 37410842
    809750 8fla:L6 (2.63) BS01 rna ? GO:0002181 ... P26373 37410842
    809751 8fla:L6 (2.63) BS02 rna ? GO:0002181 ... P26373 37410842
    809752 8fla:L7 (2.63) BS01 rna ? GO:0002181 ... P40429 37410842
    809753 8fla:L8 (2.63) BS01 rna ? GO:0002181 ... P50914 37410842
    809754 8fla:L9 (2.63) BS01 rna ? GO:0002181 ... P61313 37410842
    809755 8fla:L9 (2.63) BS02 rna ? GO:0002181 ... P61313 37410842
    809756 8fla:LA (2.63) BS01 rna ? GO:0002181 ... P18621 37410842
    809757 8fla:LA (2.63) BS02 rna ? GO:0002181 ... P18621 37410842
    809758 8fla:LB (2.63) BS01 rna ? GO:0002181 ... Q07020 37410842
    809759 8fla:LC (2.63) BS01 rna ? GO:0002181 ... Q02543 37410842
    809760 8fla:LC (2.63) BS02 rna ? GO:0002181 ... Q02543 37410842
    809761 8fla:LD (2.63) BS01 rna ? GO:0002181 ... P84098 37410842
    809762 8fla:LE (2.63) BS01 rna ? GO:0001650 ... P46778 37410842
    809763 8fla:LE (2.63) BS02 rna ? GO:0001650 ... P46778 37410842
    809764 8fla:LF (2.63) BS01 rna ? GO:0002181 ... P35268 37410842
    809765 8fla:LG (2.63) BS01 rna ? GO:0000122 ... P62829 37410842
    809766 8fla:LH (2.63) BS01 rna ? GO:0002181 ... P62750 37410842
    809767 8fla:LH (2.63) BS02 rna ? GO:0002181 ... P62750 37410842
    809768 8fla:LI (2.63) BS01 rna ? GO:0002181 ... P61254 37410842
    809769 8fla:LI (2.63) BS02 rna ? GO:0002181 ... P61254 37410842
    809770 8fla:LJ (2.63) BS01 rna ? GO:0002181 ... P61353 37410842
    809771 8fla:LK (2.63) BS01 rna ? GO:0002181 ... P46776 37410842
    809772 8fla:LL (2.63) BS01 rna ? GO:0002181 ... P46779 37410842
    809773 8fla:LM (2.63) BS01 rna ? GO:0002181 ... P47914 37410842
    809774 8fla:LN (2.63) BS01 rna ? GO:0002181 ... P39023 37410842
    809775 8fla:LO (2.63) BS01 rna ? GO:0002181 ... P62888 37410842
    809776 8fla:LP (2.63) BS01 rna ? GO:0002181 ... P62899 37410842
    809777 8fla:LQ (2.63) BS01 rna ? GO:0002181 ... P62910 37410842
    809778 8fla:LQ (2.63) BS02 MG ? GO:0002181 ... P62910 37410842
    809779 8fla:LR (2.63) BS01 rna ? GO:0002181 ... P49207 37410842
    809780 8fla:LR (2.63) BS02 ZN ? GO:0002181 ... P49207 37410842
    809781 8fla:LS (2.63) BS01 rna ? GO:0000463 ... P42766 37410842
    809782 8fla:LS (2.63) BS02 rna ? GO:0000463 ... P42766 37410842
    809783 8fla:LT (2.63) BS01 rna ? GO:0002181 ... P18077 37410842
    809784 8fla:LT (2.63) BS02 MG ? GO:0002181 ... P18077 37410842
    809785 8fla:LU (2.63) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    809786 8fla:LV (2.63) BS01 rna ? GO:0002181 ... P83881 37410842
    809787 8fla:LV (2.63) BS02 ZN ? GO:0002181 ... P83881 37410842
    809788 8fla:LW (2.63) BS01 rna ? GO:0000448 ... P61927 37410842
    809789 8fla:LW (2.63) BS02 rna ? GO:0000448 ... P61927 37410842
    809790 8fla:LW (2.63) BS03 ZN ? GO:0000448 ... P61927 37410842
    809791 8fla:LX (2.63) BS01 rna ? GO:0002181 ... P61513 37410842
    809792 8fla:LX (2.63) BS02 ZN ? GO:0002181 ... P61513 37410842
    809793 8fla:LY (2.63) BS01 rna ? GO:0002181 ... P63173 37410842
    809794 8fla:LZ (2.63) BS01 rna ? GO:0002181 ... P62891 37410842
    809795 8fla:LZ (2.63) BS02 rna ? GO:0002181 ... P62891 37410842
    809796 8fla:NK (2.63) BS01 rna ? GO:0003723 ... Q9BRT6 37410842
    809797 8fla:NL (2.63) BS01 rna ? GO:0000027 ... Q9NZM5 37410842
    809798 8fla:NP (2.63) BS01 rna ? GO:0003676 ... O00488 37410842
    809799 8fla:NP (2.63) BS02 ZN ? GO:0003676 ... O00488 37410842
    809800 8fla:NR (2.63) BS01 rna ? GO:0005515 ... Q96EY4 37410842

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).