SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    809601 8g1s:I (3.7) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 37264140
    809602 8g1s:I (3.7) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 37264140
    809603 8g1s:I (3.7) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 37264140
    809604 8g1s:J (3.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    809605 8g1s:J (3.7) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    809606 8g1s:J (3.7) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    809607 8g1s:J (3.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    809608 8g1u:A (2.83) BS01 peptide 2.1.1.320 GO:0000387 ... O14744 37562960
    809609 8g1u:A (2.83) BS02 peptide 2.1.1.320 GO:0000387 ... O14744 37562960
    809610 8g1u:A (2.83) BS03 ADN 2.1.1.320 GO:0000387 ... O14744 37562960
    809611 8g1u:E (2.83) BS01 peptide 2.1.1.320 GO:0000387 ... O14744 37562960
    809612 8g1u:E (2.83) BS02 peptide 2.1.1.320 GO:0000387 ... O14744 37562960
    809613 8g1u:E (2.83) BS03 ADN 2.1.1.320 GO:0000387 ... O14744 37562960
    809614 8g1u:I (2.83) BS01 peptide 2.1.1.320 GO:0000387 ... O14744 37562960
    809615 8g1u:I (2.83) BS02 peptide 2.1.1.320 GO:0000387 ... O14744 37562960
    809616 8g1u:I (2.83) BS03 ADN 2.1.1.320 GO:0000387 ... O14744 37562960
    809617 8g1u:M (2.83) BS01 peptide 2.1.1.320 GO:0000387 ... O14744 37562960
    809618 8g1u:M (2.83) BS02 peptide 2.1.1.320 GO:0000387 ... O14744 37562960
    809619 8g1u:M (2.83) BS03 ADN 2.1.1.320 GO:0000387 ... O14744 37562960
    809620 8g1v:A (1.35) BS01 YIL N/A GO:0004252 ... Q9Y5Y6 39073183
    809621 8g1w:A (1.2) BS01 peptide 3.4.21.109 GO:0004252 ... Q9Y5Y6 38477709
    809622 8g1w:A (1.2) BS02 peptide 3.4.21.109 GO:0004252 ... Q9Y5Y6 38477709
    809623 8g1y:A (1.43) BS01 PLP 4.2.3.1 GO:0004795 ... A0A0H2US33 N/A
    809624 8g1y:B (1.43) BS01 PLP 4.2.3.1 GO:0004795 ... A0A0H2US33 N/A
    809625 8g1z:A (1.87) BS01 YIZ ? N/A F8W4B7 37902787
    809626 8g1z:A (1.87) BS02 ZN ? N/A F8W4B7 37902787
    809627 8g20:A (1.766) BS01 YJ5 ? N/A F8W4B7 37902787
    809628 8g20:A (1.766) BS02 ZN ? N/A F8W4B7 37902787
    809629 8g20:B (1.766) BS01 YJ5 ? N/A F8W4B7 37902787
    809630 8g20:B (1.766) BS02 YJ5 ? N/A F8W4B7 37902787
    809631 8g20:B (1.766) BS03 ZN ? N/A F8W4B7 37902787
    809632 8g23:A (2.71) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    809633 8g23:A (2.71) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    809634 8g23:A (2.71) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    809635 8g23:A (2.71) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    809636 8g23:A (2.71) BS05 ATP 2.7.7.86 N/A Q8C6L5 38740774
    809637 8g23:A (2.71) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    809638 8g23:A (2.71) BS07 ZN 2.7.7.86 N/A Q8C6L5 38740774
    809639 8g23:C (2.71) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    809640 8g23:C (2.71) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    809641 8g23:C (2.71) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    809642 8g23:C (2.71) BS04 VWX 2.7.7.86 N/A Q8C6L5 38740774
    809643 8g23:C (2.71) BS05 MG 2.7.7.86 N/A Q8C6L5 38740774
    809644 8g23:C (2.71) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    809645 8g27:C (3.3) BS01 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    809646 8g27:C (3.3) BS02 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    809647 8g27:C (3.3) BS03 UDP 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    809648 8g27:D (3.3) BS01 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    809649 8g27:D (3.3) BS02 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    809650 8g27:D (3.3) BS03 UDP 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    809651 8g27:I (3.3) BS01 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    809652 8g27:I (3.3) BS02 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    809653 8g27:I (3.3) BS03 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    809654 8g27:I (3.3) BS04 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    809655 8g27:I (3.3) BS05 UDP 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    809656 8g29:10 (2.55) BS01 rna ? GO:0003735 ... P60493 38238495
    809657 8g29:10 (2.55) BS02 rna ? GO:0003735 ... P60493 38238495
    809658 8g29:10 (2.55) BS03 rna ? GO:0003735 ... P60493 38238495
    809659 8g29:10 (2.55) BS04 MG ? GO:0003735 ... P60493 38238495
    809660 8g29:10 (2.55) BS05 MG ? GO:0003735 ... P60493 38238495
    809661 8g29:11 (2.55) BS01 rna ? GO:0003735 ... P60494 38238495
    809662 8g29:11 (2.55) BS02 rna ? GO:0003735 ... P60494 38238495
    809663 8g29:11 (2.55) BS03 MG ? GO:0003735 ... P60494 38238495
    809664 8g29:12 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 38238495
    809665 8g29:12 (2.55) BS02 MG ? GO:0003735 ... Q5SHP6 38238495
    809666 8g29:12 (2.55) BS03 MG ? GO:0003735 ... Q5SHP6 38238495
    809667 8g29:13 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 38238495
    809668 8g29:13 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 38238495
    809669 8g29:13 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 38238495
    809670 8g29:13 (2.55) BS04 MG ? GO:0003735 ... Q5SHQ6 38238495
    809671 8g29:14 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 38238495
    809672 8g29:14 (2.55) BS02 MG ? GO:0003735 ... Q5SJE1 38238495
    809673 8g29:14 (2.55) BS03 ZN ? GO:0003735 ... Q5SJE1 38238495
    809674 8g29:15 (2.55) BS01 rna ? GO:0003735 ... P80339 38238495
    809675 8g29:15 (2.55) BS02 MG ? GO:0003735 ... P80339 38238495
    809676 8g29:15 (2.55) BS03 ZN ? GO:0003735 ... P80339 38238495
    809677 8g29:16 (2.55) BS01 rna ? GO:0000049 ... P35871 38238495
    809678 8g29:16 (2.55) BS02 MG ? GO:0000049 ... P35871 38238495
    809679 8g29:16 (2.55) BS03 ZN ? GO:0000049 ... P35871 38238495
    809680 8g29:17 (2.55) BS01 rna ? GO:0003735 ... P80340 38238495
    809681 8g29:17 (2.55) BS02 MG ? GO:0003735 ... P80340 38238495
    809682 8g29:17 (2.55) BS03 MG ? GO:0003735 ... P80340 38238495
    809683 8g29:17 (2.55) BS04 MG ? GO:0003735 ... P80340 38238495
    809684 8g29:18 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 38238495
    809685 8g29:18 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 38238495
    809686 8g29:18 (2.55) BS03 MG ? GO:0003735 ... Q5SKU1 38238495
    809687 8g29:18 (2.55) BS04 MG ? GO:0003735 ... Q5SKU1 38238495
    809688 8g29:19 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 38238495
    809689 8g29:19 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 38238495
    809690 8g29:1D (2.55) BS01 rna ? GO:0002181 ... P60405 38238495
    809691 8g29:1D (2.55) BS02 rna ? GO:0002181 ... P60405 38238495
    809692 8g29:1D (2.55) BS03 MG ? GO:0002181 ... P60405 38238495
    809693 8g29:1D (2.55) BS04 MG ? GO:0002181 ... P60405 38238495
    809694 8g29:1D (2.55) BS05 MG ? GO:0002181 ... P60405 38238495
    809695 8g29:1D (2.55) BS06 MG ? GO:0002181 ... P60405 38238495
    809696 8g29:1D (2.55) BS07 MG ? GO:0002181 ... P60405 38238495
    809697 8g29:1D (2.55) BS08 MG ? GO:0002181 ... P60405 38238495
    809698 8g29:1D (2.55) BS09 MG ? GO:0002181 ... P60405 38238495
    809699 8g29:1D (2.55) BS10 MG ? GO:0002181 ... P60405 38238495
    809700 8g29:1D (2.55) BS11 MG ? GO:0002181 ... P60405 38238495
    809701 8g29:1D (2.55) BS12 MG ? GO:0002181 ... P60405 38238495
    809702 8g29:1D (2.55) BS13 MG ? GO:0002181 ... P60405 38238495
    809703 8g29:1E (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 38238495
    809704 8g29:1E (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 38238495
    809705 8g29:1E (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 38238495
    809706 8g29:1E (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 38238495
    809707 8g29:1E (2.55) BS05 MG ? GO:0003735 ... Q5SHN8 38238495
    809708 8g29:1F (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 38238495
    809709 8g29:1F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 38238495
    809710 8g29:1F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 38238495
    809711 8g29:1F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 38238495
    809712 8g29:1F (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 38238495
    809713 8g29:1F (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 38238495
    809714 8g29:1F (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 38238495
    809715 8g29:1F (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 38238495
    809716 8g29:1F (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 38238495
    809717 8g29:1F (2.55) BS10 MG ? GO:0003735 ... Q5SHN9 38238495
    809718 8g29:1F (2.55) BS11 MG ? GO:0003735 ... Q5SHN9 38238495
    809719 8g29:1F (2.55) BS12 MG ? GO:0003735 ... Q5SHN9 38238495
    809720 8g29:1F (2.55) BS13 MG ? GO:0003735 ... Q5SHN9 38238495
    809721 8g29:1G (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 38238495
    809722 8g29:1G (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 38238495
    809723 8g29:1G (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 38238495
    809724 8g29:1G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 38238495
    809725 8g29:1H (2.55) BS01 rna ? GO:0002181 ... P0DOY8 38238495
    809726 8g29:1I (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 38238495
    809727 8g29:1N (2.55) BS01 rna ? GO:0003729 ... P60488 38238495
    809728 8g29:1N (2.55) BS02 MG ? GO:0003729 ... P60488 38238495
    809729 8g29:1N (2.55) BS03 MG ? GO:0003729 ... P60488 38238495
    809730 8g29:1N (2.55) BS04 MG ? GO:0003729 ... P60488 38238495
    809731 8g29:1O (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 38238495
    809732 8g29:1O (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 38238495
    809733 8g29:1O (2.55) BS03 MG ? GO:0003735 ... Q5SHP8 38238495
    809734 8g29:1P (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 38238495
    809735 8g29:1P (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 38238495
    809736 8g29:1P (2.55) BS03 MG ? GO:0003735 ... Q5SHQ7 38238495
    809737 8g29:1P (2.55) BS04 MG ? GO:0003735 ... Q5SHQ7 38238495
    809738 8g29:1P (2.55) BS05 MG ? GO:0003735 ... Q5SHQ7 38238495
    809739 8g29:1P (2.55) BS06 MG ? GO:0003735 ... Q5SHQ7 38238495
    809740 8g29:1Q (2.55) BS01 rna ? GO:0000049 ... P60489 38238495
    809741 8g29:1Q (2.55) BS02 rna ? GO:0000049 ... P60489 38238495
    809742 8g29:1Q (2.55) BS03 rna ? GO:0000049 ... P60489 38238495
    809743 8g29:1Q (2.55) BS04 rna ? GO:0000049 ... P60489 38238495
    809744 8g29:1Q (2.55) BS05 MG ? GO:0000049 ... P60489 38238495
    809745 8g29:1Q (2.55) BS06 MG ? GO:0000049 ... P60489 38238495
    809746 8g29:1Q (2.55) BS07 MG ? GO:0000049 ... P60489 38238495
    809747 8g29:1Q (2.55) BS08 MG ? GO:0000049 ... P60489 38238495
    809748 8g29:1Q (2.55) BS09 MG ? GO:0000049 ... P60489 38238495
    809749 8g29:1R (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 38238495
    809750 8g29:1R (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 38238495
    809751 8g29:1R (2.55) BS03 MG ? GO:0003735 ... Q9Z9H5 38238495
    809752 8g29:1S (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 38238495
    809753 8g29:1S (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 38238495
    809754 8g29:1S (2.55) BS03 MG ? GO:0003735 ... Q5SHQ4 38238495
    809755 8g29:1S (2.55) BS04 MG ? GO:0003735 ... Q5SHQ4 38238495
    809756 8g29:1T (2.55) BS01 rna ? GO:0003735 ... P60490 38238495
    809757 8g29:1T (2.55) BS02 rna ? GO:0003735 ... P60490 38238495
    809758 8g29:1T (2.55) BS03 MG ? GO:0003735 ... P60490 38238495
    809759 8g29:1U (2.55) BS01 rna ? GO:0000027 ... P60491 38238495
    809760 8g29:1U (2.55) BS02 MG ? GO:0000027 ... P60491 38238495
    809761 8g29:1U (2.55) BS03 MG ? GO:0000027 ... P60491 38238495
    809762 8g29:1U (2.55) BS04 MG ? GO:0000027 ... P60491 38238495
    809763 8g29:1U (2.55) BS05 MG ? GO:0000027 ... P60491 38238495
    809764 8g29:1U (2.55) BS06 MG ? GO:0000027 ... P60491 38238495
    809765 8g29:1U (2.55) BS07 MG ? GO:0000027 ... P60491 38238495
    809766 8g29:1U (2.55) BS08 MG ? GO:0000027 ... P60491 38238495
    809767 8g29:1U (2.55) BS09 MG ? GO:0000027 ... P60491 38238495
    809768 8g29:1U (2.55) BS10 MG ? GO:0000027 ... P60491 38238495
    809769 8g29:1V (2.55) BS01 rna ? GO:0003723 ... P60492 38238495
    809770 8g29:1V (2.55) BS02 MG ? GO:0003723 ... P60492 38238495
    809771 8g29:1V (2.55) BS03 MG ? GO:0003723 ... P60492 38238495
    809772 8g29:1V (2.55) BS04 MG ? GO:0003723 ... P60492 38238495
    809773 8g29:1V (2.55) BS05 MG ? GO:0003723 ... P60492 38238495
    809774 8g29:1V (2.55) BS06 MG ? GO:0003723 ... P60492 38238495
    809775 8g29:1W (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 38238495
    809776 8g29:1W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 38238495
    809777 8g29:1W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 38238495
    809778 8g29:1W (2.55) BS04 MG ? GO:0003735 ... Q5SHP3 38238495
    809779 8g29:1W (2.55) BS05 MG ? GO:0003735 ... Q5SHP3 38238495
    809780 8g29:1X (2.55) BS01 rna ? GO:0003735 ... Q5SHP0 38238495
    809781 8g29:1X (2.55) BS02 MG ? GO:0003735 ... Q5SHP0 38238495
    809782 8g29:1X (2.55) BS03 MG ? GO:0003735 ... Q5SHP0 38238495
    809783 8g29:1X (2.55) BS04 MG ? GO:0003735 ... Q5SHP0 38238495
    809784 8g29:1X (2.55) BS05 MG ? GO:0003735 ... Q5SHP0 38238495
    809785 8g29:1X (2.55) BS06 MG ? GO:0003735 ... Q5SHP0 38238495
    809786 8g29:1Y (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 38238495
    809787 8g29:1Y (2.55) BS02 MG ? GO:0003723 ... Q5SHP9 38238495
    809788 8g29:1Y (2.55) BS03 ZN ? GO:0003723 ... Q5SHP9 38238495
    809789 8g29:1Z (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 38238495
    809790 8g29:1Z (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 38238495
    809791 8g29:1Z (2.55) BS03 MG ? GO:0003723 ... Q5SHZ1 38238495
    809792 8g29:1b (2.55) BS01 rna ? GO:0003735 ... P80371 38238495
    809793 8g29:1c (2.55) BS01 rna ? GO:0003676 ... P80372 38238495
    809794 8g29:1d (2.55) BS01 rna ? GO:0003723 ... P80373 38238495
    809795 8g29:1d (2.55) BS02 SF4 ? GO:0003723 ... P80373 38238495
    809796 8g29:1e (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 38238495
    809797 8g29:1e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 38238495
    809798 8g29:1e (2.55) BS03 MG ? GO:0003723 ... Q5SHQ5 38238495
    809799 8g29:1f (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 38238495
    809800 8g29:1f (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 38238495

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).