SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 4043 4044 4045 4046 4047 4048 4049 4050 4051 4052 4053 4054 4055 4056 4057 4058 4059 4060 4061 4062 4063 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    810401 8fmm:D (3.112) BS01 CA ? GO:0002086 ... P63316 N/A
    810402 8fmm:D (3.112) BS02 CA ? GO:0002086 ... P63316 N/A
    810403 8fmm:D (3.112) BS03 CA ? GO:0002086 ... P63316 N/A
    810404 8fmn:A (3.101) BS01 CA ? GO:0002086 ... P63316 N/A
    810405 8fmn:A (3.101) BS02 CA ? GO:0002086 ... P63316 N/A
    810406 8fmn:A (3.101) BS03 CA ? GO:0002086 ... P63316 N/A
    810407 8fmn:D (3.101) BS01 CA ? GO:0002086 ... P63316 N/A
    810408 8fmn:D (3.101) BS02 CA ? GO:0002086 ... P63316 N/A
    810409 8fmn:D (3.101) BS03 CA ? GO:0002086 ... P63316 N/A
    810410 8fmo:A (2.612) BS01 CA ? GO:0002086 ... P63316 N/A
    810411 8fmo:A (2.612) BS02 CA ? GO:0002086 ... P63316 N/A
    810412 8fmo:A (2.612) BS03 CA ? GO:0002086 ... P63316 N/A
    810413 8fmo:D (2.612) BS01 CA ? GO:0002086 ... P63316 N/A
    810414 8fmo:D (2.612) BS02 CA ? GO:0002086 ... P63316 N/A
    810415 8fmo:D (2.612) BS03 CA ? GO:0002086 ... P63316 N/A
    810416 8fmp:A (3.24) BS01 CA ? GO:0002086 ... P63316 N/A
    810417 8fmp:A (3.24) BS02 CA ? GO:0002086 ... P63316 N/A
    810418 8fmp:A (3.24) BS03 CA ? GO:0002086 ... P63316 N/A
    810419 8fmp:D (3.24) BS01 CA ? GO:0002086 ... P63316 N/A
    810420 8fmp:D (3.24) BS02 CA ? GO:0002086 ... P63316 N/A
    810421 8fmp:D (3.24) BS03 CA ? GO:0002086 ... P63316 N/A
    810422 8fmq:A (3.248) BS01 CA ? GO:0002086 ... P63316 N/A
    810423 8fmq:A (3.248) BS02 CA ? GO:0002086 ... P63316 N/A
    810424 8fmq:A (3.248) BS03 CA ? GO:0002086 ... P63316 N/A
    810425 8fmq:D (3.248) BS01 CA ? GO:0002086 ... P63316 N/A
    810426 8fmq:D (3.248) BS02 CA ? GO:0002086 ... P63316 N/A
    810427 8fmq:D (3.248) BS03 CA ? GO:0002086 ... P63316 N/A
    810428 8fmr:A (3.238) BS01 CA ? GO:0002086 ... P63316 N/A
    810429 8fmr:A (3.238) BS02 CA ? GO:0002086 ... P63316 N/A
    810430 8fmr:A (3.238) BS03 CA ? GO:0002086 ... P63316 N/A
    810431 8fmr:D (3.238) BS01 CA ? GO:0002086 ... P63316 N/A
    810432 8fmr:D (3.238) BS02 CA ? GO:0002086 ... P63316 N/A
    810433 8fmr:D (3.238) BS03 CA ? GO:0002086 ... P63316 N/A
    810434 8fms:A (3.435) BS01 CA ? GO:0002086 ... P63316 N/A
    810435 8fms:A (3.435) BS02 CA ? GO:0002086 ... P63316 N/A
    810436 8fms:A (3.435) BS03 CA ? GO:0002086 ... P63316 N/A
    810437 8fms:D (3.435) BS01 CA ? GO:0002086 ... P63316 N/A
    810438 8fms:D (3.435) BS02 CA ? GO:0002086 ... P63316 N/A
    810439 8fms:D (3.435) BS03 CA ? GO:0002086 ... P63316 N/A
    810440 8fmt:A (2.8) BS01 CA ? GO:0002086 ... P63316 N/A
    810441 8fmt:A (2.8) BS02 CA ? GO:0002086 ... P63316 N/A
    810442 8fmt:A (2.8) BS03 CA ? GO:0002086 ... P63316 N/A
    810443 8fmt:D (2.8) BS01 CA ? GO:0002086 ... P63316 N/A
    810444 8fmt:D (2.8) BS02 CA ? GO:0002086 ... P63316 N/A
    810445 8fmt:D (2.8) BS03 CA ? GO:0002086 ... P63316 N/A
    810446 8fmu:A (2.03) BS01 Y3T ? GO:0000978 ... O15178 38348945
    810447 8fmu:A (2.03) BS02 Y3T ? GO:0000978 ... O15178 38348945
    810448 8fmu:B (2.03) BS01 Y3T ? GO:0000978 ... O15178 38348945
    810449 8fmu:B (2.03) BS02 Y3T ? GO:0000978 ... O15178 38348945
    810450 8fmv:C (3.34) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    810451 8fmv:C (3.34) BS02 HT1 7.6.2.- GO:0005524 ... O07550 37938578
    810452 8fmv:C (3.34) BS03 HT1 7.6.2.- GO:0005524 ... O07550 37938578
    810453 8fmv:D (3.34) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    810454 8fmv:D (3.34) BS02 HT1 7.6.2.- GO:0005524 ... O07549 37938578
    810455 8fmw:AC (2.86) BS01 rna ? GO:0003723 ... O51353 37907464
    810456 8fmw:AD (2.86) BS01 rna ? GO:0002181 ... P94270 37907464
    810457 8fmw:AE (2.86) BS01 rna ? GO:0003735 ... P94267 37907464
    810458 8fmw:AF (2.86) BS01 rna ? GO:0003735 ... P94268 37907464
    810459 8fmw:AG (2.86) BS01 rna ? GO:0000049 ... O51443 37907464
    810460 8fmw:AG (2.86) BS02 rna ? GO:0000049 ... O51443 37907464
    810461 8fmw:AH (2.86) BS01 rna ? GO:0002181 ... O51446 37907464
    810462 8fmw:AI (2.86) BS01 rna ? GO:0003735 ... O51139 37907464
    810463 8fmw:AJ (2.86) BS01 rna ? GO:0003735 ... O51352 37907464
    810464 8fmw:AK (2.86) BS01 rna ? GO:0003735 ... O51354 37907464
    810465 8fmw:AL (2.86) BS01 rna ? GO:0003729 ... O51314 37907464
    810466 8fmw:AM (2.86) BS01 rna ? GO:0003735 ... O51441 37907464
    810467 8fmw:AM (2.86) BS02 rna ? GO:0003735 ... O51441 37907464
    810468 8fmw:AN (2.86) BS01 rna ? GO:0003735 ... O51450 37907464
    810469 8fmw:AO (2.86) BS01 rna ? GO:0003735 ... O51438 37907464
    810470 8fmw:AP (2.86) BS01 rna ? GO:0003735 ... O51456 37907464
    810471 8fmw:AQ (2.86) BS01 rna ? GO:0003735 ... O51447 37907464
    810472 8fmw:AQ (2.86) BS02 rna ? GO:0003735 ... O51447 37907464
    810473 8fmw:AR (2.86) BS01 rna ? GO:0003735 ... O51642 37907464
    810474 8fmw:AR (2.86) BS02 rna ? GO:0003735 ... O51642 37907464
    810475 8fmw:AS (2.86) BS01 rna ? GO:0000027 ... O51206 37907464
    810476 8fmw:AT (2.86) BS01 rna ? GO:0003723 ... O51719 37907464
    810477 8fmw:AU (2.86) BS01 rna ? GO:0003735 ... P94272 37907464
    810478 8fmw:AV (2.86) BS01 rna ? GO:0003735 ... P94269 37907464
    810479 8fmw:AW (2.86) BS01 rna ? GO:0003723 ... O51442 37907464
    810480 8fmw:AX (2.86) BS01 rna ? GO:0003723 ... O51727 37907464
    810481 8fmw:AX (2.86) BS02 rna ? GO:0003723 ... O51727 37907464
    810482 8fmw:AY (2.86) BS01 rna ? GO:0003735 ... O51721 37907464
    810483 8fmw:AY (2.86) BS02 rna ? GO:0003735 ... O51721 37907464
    810484 8fmw:AZ (2.86) BS01 rna ? GO:0003735 ... O51325 37907464
    810485 8fmw:Aa (2.86) BS01 rna ? GO:0003735 ... O51439 37907464
    810486 8fmw:Ab (2.86) BS01 rna N/A GO:0003735 ... N/A 37907464
    810487 8fmw:Ab (2.86) BS02 rna N/A GO:0003735 ... N/A 37907464
    810488 8fmw:Ac (2.86) BS01 rna ? GO:0003735 ... O51247 37907464
    810489 8fmw:Ad (2.86) BS01 rna ? GO:0003735 ... O51646 37907464
    810490 8fmw:Ad (2.86) BS02 ZN ? GO:0003735 ... O51646 37907464
    810491 8fmw:Ae (2.86) BS01 rna ? GO:0003735 ... O51357 37907464
    810492 8fmw:Af (2.86) BS01 rna ? GO:0003735 ... P29220 37907464
    810493 8fmw:Ag (2.86) BS01 rna ? GO:0003735 ... O51207 37907464
    810494 8fmw:Ah (2.86) BS01 rna ? GO:0003735 ... O51452 37907464
    810495 8fmw:Ah (2.86) BS02 ZN ? GO:0003735 ... O51452 37907464
    810496 8fmw:Ai (2.86) BS01 rna ? N/A O51184 37907464
    810497 8fmw:C (2.86) BS01 rna ? GO:0003676 ... P94273 37907464
    810498 8fmw:D (2.86) BS01 rna ? GO:0003723 ... O51560 37907464
    810499 8fmw:E (2.86) BS01 rna ? GO:0003723 ... O51448 37907464
    810500 8fmw:F (2.86) BS01 rna ? GO:0003735 ... O51142 37907464
    810501 8fmw:G (2.86) BS01 rna ? GO:0000049 ... O51347 37907464
    810502 8fmw:G (2.86) BS02 rna ? GO:0000049 ... O51347 37907464
    810503 8fmw:H (2.86) BS01 rna ? GO:0003735 ... O51445 37907464
    810504 8fmw:I (2.86) BS01 rna ? GO:0003723 ... O51313 37907464
    810505 8fmw:J (2.86) BS01 rna ? GO:0000049 ... P94266 37907464
    810506 8fmw:K (2.86) BS01 rna ? GO:0003735 ... O51454 37907464
    810507 8fmw:L (2.86) BS01 rna ? GO:0000049 ... O51348 37907464
    810508 8fmw:M (2.86) BS01 rna ? GO:0000049 ... O51453 37907464
    810509 8fmw:M (2.86) BS02 rna ? GO:0000049 ... O51453 37907464
    810510 8fmw:N (2.86) BS01 rna ? GO:0003735 ... O51444 37907464
    810511 8fmw:N (2.86) BS02 ZN ? GO:0003735 ... O51444 37907464
    810512 8fmw:O (2.86) BS01 rna ? GO:0003735 ... O51744 37907464
    810513 8fmw:O (2.86) BS02 rna ? GO:0003735 ... O51744 37907464
    810514 8fmw:P (2.86) BS01 rna ? GO:0003735 ... O51638 37907464
    810515 8fmw:Q (2.86) BS01 rna ? GO:0003735 ... O51440 37907464
    810516 8fmw:R (2.86) BS01 rna ? GO:0003735 ... O51140 37907464
    810517 8fmw:R (2.86) BS02 ZN ? GO:0003735 ... O51140 37907464
    810518 8fmw:S (2.86) BS01 rna ? GO:0000028 ... P94271 37907464
    810519 8fmw:T (2.86) BS01 rna ? GO:0003723 ... P49394 37907464
    810520 8fmw:U (2.86) BS01 rna ? GO:0003735 ... O51271 37907464
    810521 8fmw:W (2.86) BS01 rna ? GO:0044238 ... O51405 37907464
    810522 8fmw:W (2.86) BS02 rna ? GO:0044238 ... O51405 37907464
    810523 8fmw:W (2.86) BS03 rna ? GO:0044238 ... O51405 37907464
    810524 8fmz:A (2.59) BS01 peptide ? GO:0004930 ... P20789 36917754
    810525 8fn0:A (2.89) BS01 peptide ? GO:0001659 ... P20789 36917754
    810526 8fn0:A (2.89) BS02 SRW ? GO:0001659 ... P20789 36917754
    810527 8fn0:B (2.89) BS01 SRW N/A GO:0003924 ... N/A 36917754
    810528 8fn1:A (2.88) BS01 peptide ? GO:0001659 ... P20789 36917754
    810529 8fn2:D (3.4) BS01 rna ? GO:0002181 ... P94270 37907464
    810530 8fn2:E (3.4) BS01 rna ? GO:0003735 ... P94267 37907464
    810531 8fn2:F (3.4) BS01 rna ? GO:0003735 ... P94268 37907464
    810532 8fn2:G (3.4) BS01 rna ? GO:0000049 ... O51443 37907464
    810533 8fn2:G (3.4) BS02 rna ? GO:0000049 ... O51443 37907464
    810534 8fn2:H (3.4) BS01 rna ? GO:0002181 ... O51446 37907464
    810535 8fn2:I (3.4) BS01 rna ? GO:0003735 ... O51139 37907464
    810536 8fn2:J (3.4) BS01 rna ? GO:0003735 ... O51352 37907464
    810537 8fn2:K (3.4) BS01 rna ? GO:0003735 ... O51354 37907464
    810538 8fn2:L (3.4) BS01 rna ? GO:0003729 ... O51314 37907464
    810539 8fn2:M (3.4) BS01 rna ? GO:0003735 ... O51441 37907464
    810540 8fn2:N (3.4) BS01 rna ? GO:0003735 ... O51450 37907464
    810541 8fn2:O (3.4) BS01 rna ? GO:0003735 ... O51438 37907464
    810542 8fn2:P (3.4) BS01 rna ? GO:0003735 ... O51456 37907464
    810543 8fn2:Q (3.4) BS01 rna ? GO:0003735 ... O51447 37907464
    810544 8fn2:Q (3.4) BS02 rna ? GO:0003735 ... O51447 37907464
    810545 8fn2:R (3.4) BS01 rna ? GO:0003735 ... O51642 37907464
    810546 8fn2:S (3.4) BS01 rna ? GO:0000027 ... O51206 37907464
    810547 8fn2:T (3.4) BS01 rna ? GO:0003723 ... O51719 37907464
    810548 8fn2:U (3.4) BS01 rna ? GO:0003735 ... P94272 37907464
    810549 8fn2:V (3.4) BS01 rna ? GO:0003735 ... P94269 37907464
    810550 8fn2:W (3.4) BS01 rna ? GO:0003723 ... O51442 37907464
    810551 8fn2:X (3.4) BS01 rna ? GO:0003723 ... O51727 37907464
    810552 8fn2:X (3.4) BS02 rna ? GO:0003723 ... O51727 37907464
    810553 8fn2:Y (3.4) BS01 rna ? GO:0003735 ... O51721 37907464
    810554 8fn2:Y (3.4) BS02 rna ? GO:0003735 ... O51721 37907464
    810555 8fn2:Z (3.4) BS01 rna ? GO:0003735 ... O51325 37907464
    810556 8fn2:a (3.4) BS01 rna ? GO:0003735 ... O51439 37907464
    810557 8fn2:b (3.4) BS01 rna ? GO:0003735 ... A0A0H3C073 37907464
    810558 8fn2:b (3.4) BS02 rna ? GO:0003735 ... A0A0H3C073 37907464
    810559 8fn2:c (3.4) BS01 rna ? GO:0003735 ... O51247 37907464
    810560 8fn2:d (3.4) BS01 rna ? GO:0003735 ... O51646 37907464
    810561 8fn2:d (3.4) BS02 ZN ? GO:0003735 ... O51646 37907464
    810562 8fn2:e (3.4) BS01 rna ? GO:0003735 ... O51357 37907464
    810563 8fn2:f (3.4) BS01 rna ? GO:0003735 ... P29220 37907464
    810564 8fn2:g (3.4) BS01 rna ? GO:0003735 ... O51207 37907464
    810565 8fn2:h (3.4) BS01 rna ? GO:0003735 ... O51452 37907464
    810566 8fn2:h (3.4) BS02 ZN ? GO:0003735 ... O51452 37907464
    810567 8fn2:i (3.4) BS01 rna ? N/A O51184 37907464
    810568 8fn3:A (2.17) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    810569 8fn3:A (2.17) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    810570 8fn3:A (2.17) BS03 Y43 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    810571 8fn3:A (2.17) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    810572 8fn3:A (2.17) BS05 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    810573 8fn6:2 (3.7) BS01 rna ? GO:0003723 ... B6SBL9 37410820
    810574 8fn6:2 (3.7) BS02 ATP ? GO:0003723 ... B6SBL9 37410820
    810575 8fn6:5 (3.7) BS01 rna ? GO:0003723 ... Q389F5 37410820
    810576 8fn6:6 (3.7) BS01 rna ? GO:0000963 ... Q57ZX7 37410820
    810577 8fn7:A (2.8) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810578 8fn7:A (2.8) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810579 8fn7:A (2.8) BS03 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810580 8fn7:A (2.8) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810581 8fn7:A (2.8) BS05 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810582 8fn7:A (2.8) BS06 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810583 8fn7:A (2.8) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810584 8fn7:C (2.8) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810585 8fn7:D (2.8) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810586 8fn7:D (2.8) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810587 8fn7:G (2.8) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810588 8fn7:G (2.8) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810589 8fn7:G (2.8) BS03 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810590 8fn7:G (2.8) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810591 8fn7:G (2.8) BS05 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810592 8fn7:G (2.8) BS06 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810593 8fn7:G (2.8) BS07 DLU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810594 8fn7:I (2.8) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810595 8fn7:J (2.8) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810596 8fn7:J (2.8) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P42166
    37478179
    810597 8fn8:A (1.89) BS01 CA ? N/A P24821 37356715
    810598 8fn9:A (1.8) BS01 CA ? N/A Q92752 37356715
    810599 8fn9:C (1.8) BS01 CA ? N/A Q92752 37356715
    810600 8fn9:E (1.8) BS01 CA ? N/A Q92752 37356715

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).