SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    811201 8fon:RY (3.64) BS02 MG ? GO:0003723 ... Q5SHP9 36924943
    811202 8fon:RY (3.64) BS03 ZN ? GO:0003723 ... Q5SHP9 36924943
    811203 8fon:RZ (3.64) BS01 rna ? GO:0003723 ... Q5SHZ1 36924943
    811204 8fon:RZ (3.64) BS02 rna ? GO:0003723 ... Q5SHZ1 36924943
    811205 8fon:RZ (3.64) BS03 rna ? GO:0003723 ... Q5SHZ1 36924943
    811206 8fon:XB (3.64) BS01 rna ? GO:0003735 ... P80371 36924943
    811207 8fon:XC (3.64) BS01 rna ? GO:0003676 ... P80372 36924943
    811208 8fon:XD (3.64) BS01 rna ? GO:0003723 ... P80373 36924943
    811209 8fon:XD (3.64) BS02 SF4 ? GO:0003723 ... P80373 36924943
    811210 8fon:XE (3.64) BS01 rna ? GO:0003723 ... Q5SHQ5 36924943
    811211 8fon:XE (3.64) BS02 MG ? GO:0003723 ... Q5SHQ5 36924943
    811212 8fon:XF (3.64) BS01 rna ? GO:0003735 ... Q5SLP8 36924943
    811213 8fon:XG (3.64) BS01 rna ? GO:0000049 ... P17291 36924943
    811214 8fon:XH (3.64) BS01 rna ? GO:0003735 ... P0DOY9 36924943
    811215 8fon:XI (3.64) BS01 rna ? GO:0003723 ... P80374 36924943
    811216 8fon:XJ (3.64) BS01 rna ? GO:0000049 ... Q5SHN7 36924943
    811217 8fon:XK (3.64) BS01 rna ? GO:0003735 ... P80376 36924943
    811218 8fon:XK (3.64) BS02 MG ? GO:0003735 ... P80376 36924943
    811219 8fon:XL (3.64) BS01 rna ? GO:0000049 ... Q5SHN3 36924943
    811220 8fon:XM (3.64) BS01 rna ? GO:0000049 ... P80377 36924943
    811221 8fon:XM (3.64) BS02 rna ? GO:0000049 ... P80377 36924943
    811222 8fon:XN (3.64) BS01 rna ? GO:0003735 ... P0DOY6 36924943
    811223 8fon:XN (3.64) BS02 ZN ? GO:0003735 ... P0DOY6 36924943
    811224 8fon:XO (3.64) BS01 rna ? GO:0003735 ... Q5SJ76 36924943
    811225 8fon:XO (3.64) BS02 rna ? GO:0003735 ... Q5SJ76 36924943
    811226 8fon:XP (3.64) BS01 rna ? GO:0003735 ... Q5SJH3 36924943
    811227 8fon:XQ (3.64) BS01 rna ? GO:0003735 ... P0DOY7 36924943
    811228 8fon:XQ (3.64) BS02 MG ? GO:0003735 ... P0DOY7 36924943
    811229 8fon:XR (3.64) BS01 rna ? GO:0003735 ... Q5SLQ0 36924943
    811230 8fon:XS (3.64) BS01 rna ? GO:0000028 ... Q5SHP2 36924943
    811231 8fon:XT (3.64) BS01 rna ? GO:0003723 ... P80380 36924943
    811232 8fon:Y0 (3.64) BS01 rna ? GO:0003735 ... P60493 36924943
    811233 8fon:Y0 (3.64) BS02 rna ? GO:0003735 ... P60493 36924943
    811234 8fon:Y1 (3.64) BS01 rna ? GO:0003735 ... P60494 36924943
    811235 8fon:Y2 (3.64) BS01 rna ? GO:0003735 ... Q5SHP6 36924943
    811236 8fon:Y3 (3.64) BS01 rna ? GO:0003735 ... Q5SHQ6 36924943
    811237 8fon:Y3 (3.64) BS02 rna ? GO:0003735 ... Q5SHQ6 36924943
    811238 8fon:Y4 (3.64) BS01 rna ? GO:0003735 ... Q5SJE1 36924943
    811239 8fon:Y5 (3.64) BS01 rna ? GO:0003735 ... P80339 36924943
    811240 8fon:Y5 (3.64) BS02 ZN ? GO:0003735 ... P80339 36924943
    811241 8fon:Y6 (3.64) BS01 rna ? GO:0003735 ... P35871 36924943
    811242 8fon:Y6 (3.64) BS02 ZN ? GO:0003735 ... P35871 36924943
    811243 8fon:Y7 (3.64) BS01 rna ? GO:0003735 ... P80340 36924943
    811244 8fon:Y8 (3.64) BS01 rna ? GO:0003735 ... Q5SKU1 36924943
    811245 8fon:Y9 (3.64) BS01 rna ? GO:0003735 ... Q5SHR2 36924943
    811246 8fon:Y9 (3.64) BS02 ZN ? GO:0003735 ... Q5SHR2 36924943
    811247 8fon:YD (3.64) BS01 rna ? GO:0002181 ... P60405 36924943
    811248 8fon:YD (3.64) BS02 rna ? GO:0002181 ... P60405 36924943
    811249 8fon:YD (3.64) BS03 MG ? GO:0002181 ... P60405 36924943
    811250 8fon:YD (3.64) BS04 MG ? GO:0002181 ... P60405 36924943
    811251 8fon:YD (3.64) BS05 MG ? GO:0002181 ... P60405 36924943
    811252 8fon:YE (3.64) BS01 rna ? GO:0003735 ... Q5SHN8 36924943
    811253 8fon:YE (3.64) BS02 MG ? GO:0003735 ... Q5SHN8 36924943
    811254 8fon:YE (3.64) BS03 MG ? GO:0003735 ... Q5SHN8 36924943
    811255 8fon:YF (3.64) BS01 rna ? GO:0003735 ... Q5SHN9 36924943
    811256 8fon:YG (3.64) BS01 rna ? GO:0000049 ... Q5SHQ0 36924943
    811257 8fon:YG (3.64) BS02 rna ? GO:0000049 ... Q5SHQ0 36924943
    811258 8fon:YG (3.64) BS03 rna ? GO:0000049 ... Q5SHQ0 36924943
    811259 8fon:YH (3.64) BS01 rna ? GO:0002181 ... P0DOY8 36924943
    811260 8fon:YI (3.64) BS01 rna ? GO:0003735 ... Q5SLQ1 36924943
    811261 8fon:YI (3.64) BS02 rna ? GO:0003735 ... Q5SLQ1 36924943
    811262 8fon:YN (3.64) BS01 rna ? GO:0003729 ... P60488 36924943
    811263 8fon:YO (3.64) BS01 rna ? GO:0003735 ... Q5SHP8 36924943
    811264 8fon:YO (3.64) BS02 rna ? GO:0003735 ... Q5SHP8 36924943
    811265 8fon:YP (3.64) BS01 rna ? GO:0003735 ... Q5SHQ7 36924943
    811266 8fon:YQ (3.64) BS01 rna ? GO:0003735 ... P60489 36924943
    811267 8fon:YQ (3.64) BS02 rna ? GO:0003735 ... P60489 36924943
    811268 8fon:YR (3.64) BS01 rna ? GO:0003735 ... Q9Z9H5 36924943
    811269 8fon:YS (3.64) BS01 rna ? GO:0003735 ... Q5SHQ4 36924943
    811270 8fon:YS (3.64) BS02 rna ? GO:0003735 ... Q5SHQ4 36924943
    811271 8fon:YT (3.64) BS01 rna ? GO:0003735 ... P60490 36924943
    811272 8fon:YT (3.64) BS02 rna ? GO:0003735 ... P60490 36924943
    811273 8fon:YU (3.64) BS01 rna ? GO:0000027 ... P60491 36924943
    811274 8fon:YV (3.64) BS01 rna ? GO:0003723 ... P60492 36924943
    811275 8fon:YW (3.64) BS01 rna ? GO:0003735 ... Q5SHP3 36924943
    811276 8fon:YX (3.64) BS01 rna ? GO:0003735 ... Q5SHP0 36924943
    811277 8fon:YX (3.64) BS02 MG ? GO:0003735 ... Q5SHP0 36924943
    811278 8fon:YY (3.64) BS01 rna ? GO:0003723 ... Q5SHP9 36924943
    811279 8fon:YY (3.64) BS02 MG ? GO:0003723 ... Q5SHP9 36924943
    811280 8fon:YY (3.64) BS03 ZN ? GO:0003723 ... Q5SHP9 36924943
    811281 8fon:YZ (3.64) BS01 rna ? GO:0003723 ... Q5SHZ1 36924943
    811282 8fon:YZ (3.64) BS02 rna ? GO:0003723 ... Q5SHZ1 36924943
    811283 8fon:YZ (3.64) BS03 rna ? GO:0003723 ... Q5SHZ1 36924943
    811284 8foq:A (1.6) BS01 3NY N/A GO:0004425 ... N/A N/A
    811285 8for:A (2.2) BS01 6NT 4.1.2.4 GO:0004139 ... P0A6L0 N/A
    811286 8for:B (2.2) BS01 6NT 4.1.2.4 GO:0004139 ... P0A6L0 N/A
    811287 8for:C (2.2) BS01 6NT 4.1.2.4 GO:0004139 ... P0A6L0 N/A
    811288 8for:D (2.2) BS01 6NT 4.1.2.4 GO:0004139 ... P0A6L0 N/A
    811289 8for:E (2.2) BS01 6NT 4.1.2.4 GO:0004139 ... P0A6L0 N/A
    811290 8for:F (2.2) BS01 6NT 4.1.2.4 GO:0004139 ... P0A6L0 N/A
    811291 8fos:A (1.56) BS01 6NT N/A GO:0004553 ... N/A N/A
    811292 8fov:A (1.86) BS01 FAD ? GO:0004497 ... F6LWA5 39989782
    811293 8fov:B (1.86) BS01 FAD ? GO:0004497 ... F6LWA5 39989782
    811294 8fow:A (1.6) BS01 1QK 2.7.11.22 GO:0000082 ... P24941 37270540
    811295 8fow:A (1.6) BS02 7TW 2.7.11.22 GO:0000082 ... P24941 37270540
    811296 8foz:A (2.0) BS01 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    811297 8foz:A (2.0) BS02 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    811298 8foz:B (2.0) BS01 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    811299 8foz:B (2.0) BS02 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    811300 8foz:C (2.0) BS01 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    811301 8foz:C (2.0) BS02 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    811302 8foz:D (2.0) BS01 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    811303 8foz:D (2.0) BS02 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    811304 8foz:E (2.0) BS01 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    811305 8foz:E (2.0) BS02 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    811306 8foz:F (2.0) BS01 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    811307 8foz:F (2.0) BS02 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    811308 8foz:G (2.0) BS01 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    811309 8foz:G (2.0) BS02 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    811310 8foz:H (2.0) BS01 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    811311 8foz:H (2.0) BS02 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    811312 8fp0:A (1.6) BS01 RRC 2.7.11.22 GO:0000082 ... P24941 37270540
    811313 8fp0:A (1.6) BS02 7TW 2.7.11.22 GO:0000082 ... P24941 37270540
    811314 8fp1:A (1.85) BS01 XXF 2.7.11.13 GO:0004672 ... P24723 36940470
    811315 8fp3:A (2.3) BS01 Y3I 2.7.11.13 GO:0004672 ... P24723 36940470
    811316 8fp5:A (1.7) BS01 ATP 2.7.11.22 GO:0000082 ... P24941 37270540
    811317 8fp5:A (1.7) BS02 MG 2.7.11.22 GO:0000082 ... P24941 37270540
    811318 8fpa:A (1.83) BS01 18D N/A N/A N/A N/A
    811319 8fpa:B (1.83) BS01 Y8W N/A N/A N/A N/A
    811320 8fpa:C (1.83) BS01 18D N/A N/A N/A N/A
    811321 8fpa:D (1.83) BS01 Y8W N/A N/A N/A N/A
    811322 8fpc:A (2.78) BS01 GLU ? GO:0005216 ... P19491 38409505
    811323 8fpc:A (2.78) BS02 CYZ ? GO:0005216 ... P19491 38409505
    811324 8fpc:A (2.78) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811325 8fpc:B (2.78) BS01 GLU ? GO:0005216 ... P19491 38409505
    811326 8fpc:B (2.78) BS02 CYZ ? GO:0005216 ... P19491 38409505
    811327 8fpc:B (2.78) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811328 8fpc:C (2.78) BS01 CYZ ? GO:0005216 ... P19491 38409505
    811329 8fpc:C (2.78) BS02 GLU ? GO:0005216 ... P19491 38409505
    811330 8fpc:C (2.78) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811331 8fpc:D (2.78) BS01 CYZ ? GO:0005216 ... P19491 38409505
    811332 8fpc:D (2.78) BS02 GLU ? GO:0005216 ... P19491 38409505
    811333 8fpc:D (2.78) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811334 8fpe:A (2.3) BS01 Y5B ? GO:0003677 ... O75469 36848571
    811335 8fpf:C (3.27) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    811336 8fpf:D (3.27) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    811337 8fph:A (3.14) BS01 GLU ? GO:0005216 ... P19491 38409505
    811338 8fph:A (3.14) BS02 CYZ ? GO:0005216 ... P19491 38409505
    811339 8fph:A (3.14) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811340 8fph:B (3.14) BS01 GLU ? GO:0005216 ... P19491 38409505
    811341 8fph:B (3.14) BS02 CYZ ? GO:0005216 ... P19491 38409505
    811342 8fph:B (3.14) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811343 8fph:C (3.14) BS01 CYZ ? GO:0005216 ... P19491 38409505
    811344 8fph:C (3.14) BS02 GLU ? GO:0005216 ... P19491 38409505
    811345 8fph:C (3.14) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811346 8fph:D (3.14) BS01 CYZ ? GO:0005216 ... P19491 38409505
    811347 8fph:D (3.14) BS02 GLU ? GO:0005216 ... P19491 38409505
    811348 8fph:D (3.14) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811349 8fpi:A (2.52) BS01 Y6L 2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0003968 ... P28887 37337079
    811350 8fpj:A (2.74) BS01 Y6L 2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0000166 ... Q6WB93 37337079
    811351 8fpk:A (2.76) BS01 Y4Y ? GO:0005216 ... P19491 38409505
    811352 8fpk:A (2.76) BS02 CYZ ? GO:0005216 ... P19491 38409505
    811353 8fpk:A (2.76) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811354 8fpk:B (2.76) BS01 Y4Y ? GO:0005216 ... P19491 38409505
    811355 8fpk:B (2.76) BS02 CYZ ? GO:0005216 ... P19491 38409505
    811356 8fpk:B (2.76) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811357 8fpk:C (2.76) BS01 CYZ ? GO:0005216 ... P19491 38409505
    811358 8fpk:C (2.76) BS02 Y4Y ? GO:0005216 ... P19491 38409505
    811359 8fpk:C (2.76) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811360 8fpk:D (2.76) BS01 CYZ ? GO:0005216 ... P19491 38409505
    811361 8fpk:D (2.76) BS02 Y4Y ? GO:0005216 ... P19491 38409505
    811362 8fpk:D (2.76) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811363 8fpl:A (2.81) BS01 Y4Y ? GO:0005216 ... P19491 38409505
    811364 8fpl:A (2.81) BS02 CYZ ? GO:0005216 ... P19491 38409505
    811365 8fpl:A (2.81) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811366 8fpl:B (2.81) BS01 Y4Y ? GO:0005216 ... P19491 38409505
    811367 8fpl:B (2.81) BS02 CYZ ? GO:0005216 ... P19491 38409505
    811368 8fpl:B (2.81) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811369 8fpl:C (2.81) BS01 CYZ ? GO:0005216 ... P19491 38409505
    811370 8fpl:C (2.81) BS02 Y4Y ? GO:0005216 ... P19491 38409505
    811371 8fpl:C (2.81) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811372 8fpl:D (2.81) BS01 CYZ ? GO:0005216 ... P19491 38409505
    811373 8fpl:D (2.81) BS02 Y4Y ? GO:0005216 ... P19491 38409505
    811374 8fpl:D (2.81) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811375 8fpo:A (2.997) BS01 peptide N/A N/A Q8NBP7 39437016
    811376 8fpo:B (2.997) BS01 peptide N/A GO:0004252 ... Q8NBP7 39437016
    811377 8fpq:A (2.503) BS01 peptide N/A N/A Q8NBP7 39437016
    811378 8fpq:B (2.503) BS01 peptide N/A GO:0004252 ... Q8NBP7 39437016
    811379 8fpq:B (2.503) BS02 CA N/A GO:0004252 ... Q8NBP7 39437016
    811380 8fpv:A (3.08) BS01 GLU ? GO:0005216 ... P19491 38409505
    811381 8fpv:A (3.08) BS02 CYZ ? GO:0005216 ... P19491 38409505
    811382 8fpv:A (3.08) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811383 8fpv:B (3.08) BS01 GLU ? GO:0005216 ... P19491 38409505
    811384 8fpv:B (3.08) BS02 CYZ ? GO:0005216 ... P19491 38409505
    811385 8fpv:B (3.08) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811386 8fpv:C (3.08) BS01 CYZ ? GO:0005216 ... P19491 38409505
    811387 8fpv:C (3.08) BS02 GLU ? GO:0005216 ... P19491 38409505
    811388 8fpv:C (3.08) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811389 8fpv:D (3.08) BS01 CYZ ? GO:0005216 ... P19491 38409505
    811390 8fpv:D (3.08) BS02 GLU ? GO:0005216 ... P19491 38409505
    811391 8fpv:D (3.08) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811392 8fpw:A (1.4) BS01 GDP 3.6.5.2 GO:0000281 ... P61586 39169042
    811393 8fpw:A (1.4) BS02 MG 3.6.5.2 GO:0000281 ... P61586 39169042
    811394 8fpx:A (1.47) BS01 GDP 3.6.5.2 GO:0000281 ... P61586 39169042
    811395 8fpx:A (1.47) BS02 MG 3.6.5.2 GO:0000281 ... P61586 39169042
    811396 8fpy:A (2.98) BS01 GLU ? GO:0005216 ... P19491 38409505
    811397 8fpy:A (2.98) BS02 CYZ ? GO:0005216 ... P19491 38409505
    811398 8fpy:A (2.98) BS03 CYZ ? GO:0005216 ... P19491 38409505
    811399 8fpy:B (2.98) BS01 GLU ? GO:0005216 ... P19491 38409505
    811400 8fpy:B (2.98) BS02 CYZ ? GO:0005216 ... P19491 38409505

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).