SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    811601 8fr8:O (2.76) BS01 rna ? GO:0000049 ... A0QSG1 37216503
    811602 8fr8:O (2.76) BS02 rna ? GO:0000049 ... A0QSG1 37216503
    811603 8fr8:O (2.76) BS03 rna ? GO:0000049 ... A0QSG1 37216503
    811604 8fr8:P (2.76) BS01 rna ? GO:0002181 ... A0QSG4 37216503
    811605 8fr8:Q (2.76) BS01 rna ? GO:0003735 ... A0R7F6 37216503
    811606 8fr8:R (2.76) BS01 rna ? GO:0003735 ... A0QS62 37216503
    811607 8fr8:S (2.76) BS01 rna ? GO:0003735 ... A0QS45 37216503
    811608 8fr8:T (2.76) BS01 rna ? GO:0003729 ... A0QSP8 37216503
    811609 8fr8:U (2.76) BS01 rna ? GO:0003735 ... A0QSF9 37216503
    811610 8fr8:U (2.76) BS02 rna ? GO:0003735 ... A0QSF9 37216503
    811611 8fr8:V (2.76) BS01 rna ? GO:0003735 ... A0QSG8 37216503
    811612 8fr8:W (2.76) BS01 rna ? GO:0000027 ... A0QYU6 37216503
    811613 8fr8:X (2.76) BS01 rna ? GO:0003723 ... A0R151 37216503
    811614 8fr8:Y (2.76) BS01 rna ? GO:0003735 ... A0QSD6 37216503
    811615 8fr8:Z (2.76) BS01 rna ? GO:0003735 ... A0QSD3 37216503
    811616 8fr8:b (2.76) BS01 rna N/A N/A N/A 37216503
    811617 8fr8:b (2.76) BS02 rna N/A N/A N/A 37216503
    811618 8fr8:c (2.76) BS01 rna ? GO:0003735 ... A0R551 37216503
    811619 8fr8:d (2.76) BS01 rna ? GO:0003723 ... A0QSD5 37216503
    811620 8fr8:e (2.76) BS01 rna ? GO:0003723 ... A0QSL7 37216503
    811621 8fr8:f (2.76) BS01 rna ? GO:0003723 ... A0QSG6 37216503
    811622 8fr8:g (2.76) BS01 rna ? GO:0003735 ... A0A2U9Q0X2 37216503
    811623 8fr8:h (2.76) BS01 rna ? GO:0000049 ... A0QS97 37216503
    811624 8fr8:i (2.76) BS01 rna ? GO:0003735 ... A0QSG3 37216503
    811625 8fr8:j (2.76) BS01 rna ? GO:0000049 ... A0QSL5 37216503
    811626 8fr8:j (2.76) BS02 rna ? GO:0000049 ... A0QSL5 37216503
    811627 8fr8:k (2.76) BS01 rna ? GO:0003735 ... A0QSP9 37216503
    811628 8fr8:k (2.76) BS02 rna ? GO:0003735 ... A0QSP9 37216503
    811629 8fr8:l (2.76) BS01 rna ? GO:0000049 ... A0A7I7K4Z0 37216503
    811630 8fr8:m (2.76) BS01 rna ? GO:0003735 ... A0QSL6 37216503
    811631 8fr8:n (2.76) BS01 rna ? GO:0000049 ... A0QS96 37216503
    811632 8fr8:o (2.76) BS01 rna ? GO:0003735 ... A0R549 37216503
    811633 8fr8:p (2.76) BS01 rna ? GO:0003735 ... A0QVQ3 37216503
    811634 8fr8:p (2.76) BS02 rna ? GO:0003735 ... A0QVQ3 37216503
    811635 8fr8:q (2.76) BS01 rna ? GO:0003735 ... A0QV37 37216503
    811636 8fr8:r (2.76) BS01 rna ? GO:0003735 ... A0QSE0 37216503
    811637 8fr8:t (2.76) BS01 rna ? GO:0003723 ... A0R102 37216503
    811638 8fr8:u (2.76) BS01 rna ? GO:0003735 ... A0QVB8 37216503
    811639 8fr8:x (2.76) BS01 rna ? GO:0003735 ... A0QYU7 37216503
    811640 8fr8:y (2.76) BS01 rna ? GO:0003735 ... A0R552 37216503
    811641 8fr9:B (1.5) BS01 MG 3.2.1.14 GO:0004553 ... Q91XA9 37398339
    811642 8frb:D (1.7) BS01 HSQ 3.2.1.14 GO:0004553 ... Q91XA9 37398339
    811643 8fri:A (2.8) BS01 Y9K N/A GO:0000122 ... O60341 40175327
    811644 8frj:A (1.57) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004482 ... P0DTD1
    P41212
    37523415
    811645 8frj:A (1.57) BS02 AW2 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004482 ... P0DTD1
    P41212
    37523415
    811646 8frk:A (1.61) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004482 ... P0DTD1
    P41212
    37523415
    811647 8frk:A (1.61) BS02 MJ7 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004482 ... P0DTD1
    P41212
    37523415
    811648 8frl:F (3.2) BS01 Y75 ? GO:0005886 ... Q6FFD7 38172635
    811649 8frl:F (3.2) BS02 JSG ? GO:0005886 ... Q6FFD7 38172635
    811650 8frl:G (3.2) BS01 JSG ? GO:0005886 ... Q6FFD6 38172635
    811651 8frm:F (3.14) BS01 JSG ? GO:0005886 ... Q6FFD7 38172635
    811652 8frm:G (3.14) BS01 JSG ? GO:0005886 ... Q6FFD6 38172635
    811653 8frn:F (3.3) BS01 JSG ? GO:0005886 ... Q6FFD7 38172635
    811654 8frn:F (3.3) BS02 VB6 ? GO:0005886 ... Q6FFD7 38172635
    811655 8frn:G (3.3) BS01 JSG ? GO:0005886 ... Q6FFD6 38172635
    811656 8fro:F (3.25) BS01 JSG ? GO:0005886 ... Q6FFD7 38172635
    811657 8fro:F (3.25) BS02 MG3 ? GO:0005886 ... Q6FFD7 38172635
    811658 8fro:G (3.25) BS01 JSG ? GO:0005886 ... Q6FFD6 38172635
    811659 8fro:G (3.25) BS02 MG3 ? GO:0005886 ... Q6FFD6 38172635
    811660 8frp:F (3.8) BS01 peptide ? GO:0005886 ... Q6FFD7 38172635
    811661 8frq:A (2.89) BS01 XF6 N/A GO:0000122 ... O60341 40175327
    811662 8frr:A (1.27) BS01 CA ? N/A Q99972 38168102
    811663 8fru:A (2.49) BS01 rna ? GO:0002181 ... E2RTN4 38242118
    811664 8fru:B (2.49) BS01 rna ? GO:0003723 ... V6TF11 38242118
    811665 8fru:C (2.49) BS01 rna ? GO:0003723 ... A8B7H8 38242118
    811666 8fru:C (2.49) BS02 rna ? GO:0003723 ... A8B7H8 38242118
    811667 8fru:D (2.49) BS01 rna ? GO:0000027 ... E2RU47 38242118
    811668 8fru:D (2.49) BS02 rna ? GO:0000027 ... E2RU47 38242118
    811669 8fru:F (2.49) BS01 rna ? GO:0000463 ... A8BRY6 38242118
    811670 8fru:F (2.49) BS02 rna ? GO:0000463 ... A8BRY6 38242118
    811671 8fru:G (2.49) BS01 rna ? GO:0000470 ... A8BLL7 38242118
    811672 8fru:G (2.49) BS02 rna ? GO:0000470 ... A8BLL7 38242118
    811673 8fru:H (2.49) BS01 rna ? GO:0002181 ... A8BNT5 38242118
    811674 8fru:I (2.49) BS01 rna ? GO:0003735 ... A8BM86 38242118
    811675 8fru:I (2.49) BS02 rna ? GO:0003735 ... A8BM86 38242118
    811676 8fru:J (2.49) BS01 rna ? GO:0003723 ... A8BI95 38242118
    811677 8fru:J (2.49) BS02 rna ? GO:0003723 ... A8BI95 38242118
    811678 8fru:L (2.49) BS01 rna ? GO:0003735 ... N/A 38242118
    811679 8fru:L (2.49) BS02 rna ? GO:0003735 ... N/A 38242118
    811680 8fru:M (2.49) BS01 rna ? GO:0003723 ... A8B4F8 38242118
    811681 8fru:N (2.49) BS01 rna ? GO:0002181 ... A8B8Z6 38242118
    811682 8fru:N (2.49) BS02 rna ? GO:0002181 ... A8B8Z6 38242118
    811683 8fru:O (2.49) BS01 rna ? GO:0003729 ... A8BU75 38242118
    811684 8fru:P (2.49) BS01 rna ? GO:0002181 ... A8BE76 38242118
    811685 8fru:P (2.49) BS02 rna ? GO:0002181 ... A8BE76 38242118
    811686 8fru:Q (2.49) BS01 rna ? GO:0002181 ... A8B4T7 38242118
    811687 8fru:R (2.49) BS01 rna ? GO:0003723 ... A8BH61 38242118
    811688 8fru:S (2.49) BS01 rna ? GO:0003735 ... V6TB90 38242118
    811689 8fru:S (2.49) BS02 rna ? GO:0003735 ... V6TB90 38242118
    811690 8fru:T (2.49) BS01 rna ? GO:0003735 ... A8B2Q4 38242118
    811691 8fru:T (2.49) BS02 rna ? GO:0003735 ... A8B2Q4 38242118
    811692 8fru:U (2.49) BS01 rna ? GO:0002181 ... V6TJ98 38242118
    811693 8fru:V (2.49) BS01 rna ? GO:0003735 ... A8BS37 38242118
    811694 8fru:W (2.49) BS01 rna ? GO:0005730 ... A8BRH7 38242118
    811695 8fru:X (2.49) BS01 rna ? GO:0003735 ... A8BMP6 38242118
    811696 8fru:X (2.49) BS02 rna ? GO:0003735 ... A8BMP6 38242118
    811697 8fru:Y (2.49) BS01 rna ? GO:0003723 ... V6TD19 38242118
    811698 8fru:Y (2.49) BS02 rna ? GO:0003723 ... V6TD19 38242118
    811699 8fru:Z (2.49) BS01 rna ? GO:0003735 ... A8B1T3 38242118
    811700 8fru:a (2.49) BS01 rna ? GO:0003735 ... A8BZ78 38242118
    811701 8fru:b (2.49) BS01 rna ? GO:0003735 ... V6TAA6 38242118
    811702 8fru:c (2.49) BS01 rna ? GO:0003723 ... A8B5N7 38242118
    811703 8fru:d (2.49) BS01 rna ? GO:0002181 ... A8BMP3 38242118
    811704 8fru:e (2.49) BS01 rna ? GO:0003735 ... A8BMD9 38242118
    811705 8fru:f (2.49) BS01 rna ? GO:0002181 ... A8BKK5 38242118
    811706 8fru:g (2.49) BS01 rna ? GO:0003735 ... A8BMF7 38242118
    811707 8fru:h (2.49) BS01 rna ? GO:0000463 ... A0A132NRN1 38242118
    811708 8fru:h (2.49) BS02 rna ? GO:0000463 ... A0A132NRN1 38242118
    811709 8fru:i (2.49) BS01 rna ? GO:0002181 ... A8BYA6 38242118
    811710 8fru:j (2.49) BS01 rna ? GO:0003723 ... V6TG99 38242118
    811711 8fru:j (2.49) BS02 rna ? GO:0003723 ... V6TG99 38242118
    811712 8fru:j (2.49) BS03 ZN ? GO:0003723 ... V6TG99 38242118
    811713 8fru:k (2.49) BS01 rna ? GO:0003735 ... A8B481 38242118
    811714 8fru:l (2.49) BS01 rna N/A GO:0003735 ... N/A 38242118
    811715 8fru:l (2.49) BS02 rna N/A GO:0003735 ... N/A 38242118
    811716 8fru:m (2.49) BS01 rna ? GO:0003729 ... A8BXE1 38242118
    811717 8fru:m (2.49) BS02 ZN ? GO:0003729 ... A8BXE1 38242118
    811718 8fru:o (2.49) BS01 rna ? GO:0002181 ... A8BQU8 38242118
    811719 8fru:p (2.49) BS01 rna ? GO:0003735 ... A8BN26 38242118
    811720 8frv:A (2.72) BS01 YAF N/A GO:0000122 ... O60341 40175327
    811721 8frw:A (2.92) BS01 Y7H ? GO:0004888 ... P23979 38177669
    811722 8frw:A (2.92) BS02 Y7H ? GO:0004888 ... P23979 38177669
    811723 8frw:B (2.92) BS01 Y7H ? GO:0004888 ... P23979 38177669
    811724 8frw:B (2.92) BS02 Y7H ? GO:0004888 ... P23979 38177669
    811725 8frw:C (2.92) BS01 Y7H ? GO:0004888 ... P23979 38177669
    811726 8frw:C (2.92) BS02 Y7H ? GO:0004888 ... P23979 38177669
    811727 8frw:D (2.92) BS01 Y7H ? GO:0004888 ... P23979 38177669
    811728 8frw:D (2.92) BS02 Y7H ? GO:0004888 ... P23979 38177669
    811729 8frw:E (2.92) BS01 Y7H ? GO:0004888 ... P23979 38177669
    811730 8frw:E (2.92) BS02 Y7H ? GO:0004888 ... P23979 38177669
    811731 8frx:A (2.7) BS01 Y82 ? GO:0004888 ... P23979 38177669
    811732 8frx:A (2.7) BS02 Y82 ? GO:0004888 ... P23979 38177669
    811733 8frx:B (2.7) BS01 Y82 ? GO:0004888 ... P23979 38177669
    811734 8frx:B (2.7) BS02 Y82 ? GO:0004888 ... P23979 38177669
    811735 8frx:C (2.7) BS01 Y82 ? GO:0004888 ... P23979 38177669
    811736 8frx:C (2.7) BS02 Y82 ? GO:0004888 ... P23979 38177669
    811737 8frx:D (2.7) BS01 Y82 ? GO:0004888 ... P23979 38177669
    811738 8frx:D (2.7) BS02 Y82 ? GO:0004888 ... P23979 38177669
    811739 8frx:E (2.7) BS01 Y82 ? GO:0004888 ... P23979 38177669
    811740 8frx:E (2.7) BS02 Y82 ? GO:0004888 ... P23979 38177669
    811741 8frz:A (2.75) BS01 SRO ? GO:0004888 ... P23979 38177669
    811742 8frz:A (2.75) BS02 SRO ? GO:0004888 ... P23979 38177669
    811743 8frz:B (2.75) BS01 SRO ? GO:0004888 ... P23979 38177669
    811744 8frz:B (2.75) BS02 SRO ? GO:0004888 ... P23979 38177669
    811745 8frz:C (2.75) BS01 SRO ? GO:0004888 ... P23979 38177669
    811746 8frz:C (2.75) BS02 SRO ? GO:0004888 ... P23979 38177669
    811747 8frz:D (2.75) BS01 SRO ? GO:0004888 ... P23979 38177669
    811748 8frz:D (2.75) BS02 SRO ? GO:0004888 ... P23979 38177669
    811749 8frz:E (2.75) BS01 SRO ? GO:0004888 ... P23979 38177669
    811750 8frz:E (2.75) BS02 SRO ? GO:0004888 ... P23979 38177669
    811751 8fs1:A (2.74) BS01 dna 2.1.1.72 GO:0003676 ... Q183J3 37082867
    811752 8fs1:A (2.74) BS02 dna 2.1.1.72 GO:0003676 ... Q183J3 37082867
    811753 8fs1:A (2.74) BS03 YB0 2.1.1.72 GO:0003676 ... Q183J3 37082867
    811754 8fs1:B (2.74) BS01 dna 2.1.1.72 GO:0003676 ... Q183J3 37082867
    811755 8fs1:B (2.74) BS02 dna 2.1.1.72 GO:0003676 ... Q183J3 37082867
    811756 8fs1:B (2.74) BS03 YB0 2.1.1.72 GO:0003676 ... Q183J3 37082867
    811757 8fs1:C (2.74) BS01 dna 2.1.1.72 GO:0003676 ... Q183J3 37082867
    811758 8fs1:C (2.74) BS02 dna 2.1.1.72 GO:0003676 ... Q183J3 37082867
    811759 8fs1:C (2.74) BS03 YB0 2.1.1.72 GO:0003676 ... Q183J3 37082867
    811760 8fs2:A (2.59) BS01 dna 2.1.1.72 GO:0003676 ... Q183J3 37082867
    811761 8fs2:A (2.59) BS02 dna 2.1.1.72 GO:0003676 ... Q183J3 37082867
    811762 8fs2:A (2.59) BS03 YB5 2.1.1.72 GO:0003676 ... Q183J3 37082867
    811763 8fs2:B (2.59) BS01 dna 2.1.1.72 GO:0003676 ... Q183J3 37082867
    811764 8fs2:B (2.59) BS02 dna 2.1.1.72 GO:0003676 ... Q183J3 37082867
    811765 8fs2:B (2.59) BS03 YB5 2.1.1.72 GO:0003676 ... Q183J3 37082867
    811766 8fs2:C (2.59) BS01 dna 2.1.1.72 GO:0003676 ... Q183J3 37082867
    811767 8fs2:C (2.59) BS02 dna 2.1.1.72 GO:0003676 ... Q183J3 37082867
    811768 8fs2:C (2.59) BS03 YB5 2.1.1.72 GO:0003676 ... Q183J3 37082867
    811769 8fs3:A (2.93) BS01 dna ? GO:0000077 ... P32641 37205533
    811770 8fs3:A (2.93) BS02 dna ? GO:0000077 ... P32641 37205533
    811771 8fs3:A (2.93) BS03 AGS ? GO:0000077 ... P32641 37205533
    811772 8fs3:B (2.93) BS01 dna ? GO:0000077 ... P40339 37205533
    811773 8fs3:B (2.93) BS02 AGS ? GO:0000077 ... P40339 37205533
    811774 8fs3:C (2.93) BS01 dna ? GO:0000077 ... P38629 37205533
    811775 8fs3:C (2.93) BS02 MG ? GO:0000077 ... P38629 37205533
    811776 8fs3:C (2.93) BS03 AGS ? GO:0000077 ... P38629 37205533
    811777 8fs3:D (2.93) BS01 AGS ? GO:0000076 ... P40348 37205533
    811778 8fs3:D (2.93) BS02 AGS ? GO:0000076 ... P40348 37205533
    811779 8fs3:E (2.93) BS01 ADP ? GO:0000077 ... P38251 37205533
    811780 8fs4:A (2.94) BS01 dna ? GO:0000077 ... P32641 37205533
    811781 8fs4:A (2.94) BS02 dna ? GO:0000077 ... P32641 37205533
    811782 8fs4:A (2.94) BS03 AGS ? GO:0000077 ... P32641 37205533
    811783 8fs4:B (2.94) BS01 dna ? GO:0000077 ... P40339 37205533
    811784 8fs4:B (2.94) BS02 AGS ? GO:0000077 ... P40339 37205533
    811785 8fs4:B (2.94) BS03 AGS ? GO:0000077 ... P40339 37205533
    811786 8fs4:C (2.94) BS01 dna ? GO:0000077 ... P38629 37205533
    811787 8fs4:C (2.94) BS02 AGS ? GO:0000077 ... P38629 37205533
    811788 8fs4:C (2.94) BS03 MG ? GO:0000077 ... P38629 37205533
    811789 8fs4:D (2.94) BS01 AGS ? GO:0000076 ... P40348 37205533
    811790 8fs4:E (2.94) BS01 AGS ? GO:0000077 ... P38251 37205533
    811791 8fs4:E (2.94) BS02 ADP ? GO:0000077 ... P38251 37205533
    811792 8fs5:A (2.76) BS01 dna ? GO:0000077 ... P32641 37205533
    811793 8fs5:A (2.76) BS02 dna ? GO:0000077 ... P32641 37205533
    811794 8fs5:A (2.76) BS03 AGS ? GO:0000077 ... P32641 37205533
    811795 8fs5:A (2.76) BS04 MG ? GO:0000077 ... P32641 37205533
    811796 8fs5:B (2.76) BS01 dna ? GO:0000077 ... P40339 37205533
    811797 8fs5:B (2.76) BS02 AGS ? GO:0000077 ... P40339 37205533
    811798 8fs5:B (2.76) BS03 AGS ? GO:0000077 ... P40339 37205533
    811799 8fs5:C (2.76) BS01 AGS ? GO:0000077 ... P38629 37205533
    811800 8fs5:C (2.76) BS02 AGS ? GO:0000077 ... P38629 37205533

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).