SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    812201 8g41:B (1.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    812202 8g41:B (1.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    812203 8g41:B (1.5) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 N/A
    812204 8g42:B (3.02) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37669364
    812205 8g43:A (1.55) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    812206 8g43:A (1.55) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    812207 8g43:A (1.55) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    812208 8g43:A (1.55) BS04 ZU6 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    812209 8g44:A (1.55) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    812210 8g44:A (1.55) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    812211 8g44:A (1.55) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    812212 8g44:A (1.55) BS04 ZU9 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    812213 8g45:A (1.62) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    812214 8g45:A (1.62) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    812215 8g45:A (1.62) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    812216 8g45:A (1.62) BS04 ZUE 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    812217 8g46:A (2.2) BS01 peptide ? GO:0003676 ... Q16531 36824856
    812218 8g46:B (2.2) BS01 ZN ? GO:0005515 ... Q9NXF7 36824856
    812219 8g46:B (2.2) BS02 YK3 ? GO:0005515 ... Q9NXF7 36824856
    812220 8g46:C (2.2) BS01 YK3 ? N/A O60885 36824856
    812221 8g47:B (3.19) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37669364
    812222 8g47:B (3.19) BS02 MOV 3.6.5.2 GO:0003924 ... P01116 37669364
    812223 8g49:A (1.6) BS01 YKF 3.-.-.- GO:0016020 ... Q2FDS6 N/A
    812224 8g4a:A (1.97) BS01 YL8 ? N/A P27540 N/A
    812225 8g4a:B (1.97) BS01 YL8 ? N/A P27540 N/A
    812226 8g4c:A (3.1) BS01 6OU ? GO:0005886 ... O34741 37393310
    812227 8g4c:B (3.1) BS01 AGS ? GO:0005524 ... O34697 37393310
    812228 8g4c:C (3.1) BS01 AGS ? GO:0005524 ... O34697 37393310
    812229 8g4d:B (3.6) BS01 AGS ? GO:0005524 ... O34697 37393310
    812230 8g4d:C (3.6) BS01 AGS ? GO:0005524 ... O34697 37393310
    812231 8g4f:B (2.91) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37669364
    812232 8g4h:B (2.87) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37669364
    812233 8g4i:A (3.24) BS01 rna N/A GO:0000028 ... A8BE86 38242118
    812234 8g4i:B (3.24) BS01 rna N/A GO:0003735 ... A8BS79 38242118
    812235 8g4i:C (3.24) BS01 rna N/A GO:0003735 ... A8BMZ1 38242118
    812236 8g4i:D (3.24) BS01 rna N/A GO:0003735 ... A8B8Z2 38242118
    812237 8g4i:E (3.24) BS01 rna N/A GO:0003723 ... A8BFE3 38242118
    812238 8g4i:F (3.24) BS01 rna N/A GO:0000028 ... A8BZD3 38242118
    812239 8g4i:F (3.24) BS02 rna N/A GO:0000028 ... A8BZD3 38242118
    812240 8g4i:G (3.24) BS01 rna N/A GO:0005840 ... A8B6L8 38242118
    812241 8g4i:H (3.24) BS01 rna N/A GO:0005840 ... A8BT38 38242118
    812242 8g4i:I (3.24) BS01 rna N/A GO:0000462 ... A8B252 38242118
    812243 8g4i:J (3.24) BS01 rna N/A GO:0003735 ... A8BKS8 38242118
    812244 8g4i:K (3.24) BS01 rna N/A GO:0003723 ... A8BRX3 38242118
    812245 8g4i:L (3.24) BS01 rna N/A GO:0003735 ... A8BVU0 38242118
    812246 8g4i:M (3.24) BS01 rna N/A GO:0003735 ... A8BUG8 38242118
    812247 8g4i:N (3.24) BS01 rna N/A GO:0003735 ... A8BE02 38242118
    812248 8g4i:O (3.24) BS01 rna N/A GO:0000028 ... E2RU83 38242118
    812249 8g4i:P (3.24) BS01 rna N/A GO:0000028 ... A8BBP3 38242118
    812250 8g4i:Q (3.24) BS01 rna N/A GO:0000462 ... A8BKC6 38242118
    812251 8g4i:R (3.24) BS01 rna N/A GO:0005840 ... A8BRG5 38242118
    812252 8g4i:S (3.24) BS01 rna N/A GO:0005829 ... A8BZ58 38242118
    812253 8g4i:T (3.24) BS01 rna N/A GO:0000028 ... A0A644F964 38242118
    812254 8g4i:U (3.24) BS01 rna N/A GO:0003735 ... A8B4G0 38242118
    812255 8g4i:W (3.24) BS01 rna N/A GO:0003735 ... E2RU77 38242118
    812256 8g4i:X (3.24) BS01 rna N/A GO:0003735 ... A8BS96 38242118
    812257 8g4i:Y (3.24) BS01 rna N/A GO:0005840 ... A8B593 38242118
    812258 8g4i:Z (3.24) BS01 rna N/A GO:0003735 ... A8B8H7 38242118
    812259 8g4i:a (3.24) BS01 rna N/A GO:0003729 ... A8BQZ7 38242118
    812260 8g4i:a (3.24) BS02 ZN N/A GO:0003729 ... A8BQZ7 38242118
    812261 8g4i:b (3.24) BS01 rna N/A N/A N/A 38242118
    812262 8g4i:c (3.24) BS01 rna N/A GO:0000028 ... A8B4F3 38242118
    812263 8g4i:d (3.24) BS01 rna N/A N/A N/A 38242118
    812264 8g4i:d (3.24) BS02 ZN N/A N/A N/A 38242118
    812265 8g4i:e (3.24) BS01 rna N/A GO:0003735 ... A0A644F843 38242118
    812266 8g4i:f (3.24) BS01 rna N/A GO:0005840 ... A8BNY1 38242118
    812267 8g4n:A (2.67) BS01 Y4B ? GO:0004888 ... P62812 37730991
    812268 8g4n:A (2.67) BS02 PIO ? GO:0004888 ... P62812 37730991
    812269 8g4n:A (2.67) BS03 ABU ? GO:0004888 ... P62812 37730991
    812270 8g4n:B (2.67) BS01 ABU ? GO:0004888 ... P63137 37730991
    812271 8g4n:B (2.67) BS02 Y4B ? GO:0004888 ... P63137 37730991
    812272 8g4n:C (2.67) BS01 ABU ? GO:0004888 ... P62812 37730991
    812273 8g4n:C (2.67) BS02 R5R ? GO:0004888 ... P62812 37730991
    812274 8g4n:C (2.67) BS03 PIO ? GO:0004888 ... P62812 37730991
    812275 8g4n:C (2.67) BS04 Y4B ? GO:0004888 ... P62812 37730991
    812276 8g4n:D (2.67) BS01 MAN ? GO:0004888 ... P22723 37730991
    812277 8g4n:D (2.67) BS02 R5R ? GO:0004888 ... P22723 37730991
    812278 8g4n:E (2.67) BS01 Y4B ? GO:0004888 ... P63137 37730991
    812279 8g4n:E (2.67) BS02 ABU ? GO:0004888 ... P63137 37730991
    812280 8g4o:C (3.06) BS01 YNL ? GO:0004888 ... P62812 37730991
    812281 8g4o:D (3.06) BS01 MAN ? GO:0004888 ... P22723 37730991
    812282 8g4o:D (3.06) BS02 YNL ? GO:0004888 ... P22723 37730991
    812283 8g4s:A (3.14) BS01 rna ? GO:0000028 ... A8BE86 38242118
    812284 8g4s:B (3.14) BS01 rna ? GO:0003735 ... A8BS79 38242118
    812285 8g4s:C (3.14) BS01 rna ? GO:0003723 ... A8BMZ1 38242118
    812286 8g4s:D (3.14) BS01 rna ? GO:0003723 ... A8B8Z2 38242118
    812287 8g4s:E (3.14) BS01 rna ? GO:0003723 ... A8BFE3 38242118
    812288 8g4s:F (3.14) BS01 rna ? GO:0000028 ... A8BZD3 38242118
    812289 8g4s:G (3.14) BS01 rna ? GO:0003735 ... A8B6L8 38242118
    812290 8g4s:H (3.14) BS01 rna ? GO:0003735 ... V6TBA3 38242118
    812291 8g4s:I (3.14) BS01 rna ? GO:0000462 ... A8B252 38242118
    812292 8g4s:J (3.14) BS01 rna ? GO:0003723 ... A8BKS8 38242118
    812293 8g4s:K (3.14) BS01 rna ? GO:0003723 ... A8BRX3 38242118
    812294 8g4s:L (3.14) BS01 rna ? GO:0003735 ... V6TF82 38242118
    812295 8g4s:M (3.14) BS01 rna ? GO:0003735 ... A8BUG8 38242118
    812296 8g4s:N (3.14) BS01 rna ? GO:0003735 ... A8BE02 38242118
    812297 8g4s:O (3.14) BS01 rna ? GO:0000028 ... E2RU83 38242118
    812298 8g4s:P (3.14) BS01 rna ? GO:0000028 ... A8BBP3 38242118
    812299 8g4s:Q (3.14) BS01 rna ? GO:0000462 ... A8BKC6 38242118
    812300 8g4s:R (3.14) BS01 rna ? GO:0003735 ... A8BRG5 38242118
    812301 8g4s:S (3.14) BS01 rna ? GO:0003676 ... A8BZ58 38242118
    812302 8g4s:T (3.14) BS01 rna ? GO:0000028 ... V6TE85 38242118
    812303 8g4s:U (3.14) BS01 rna ? GO:0003735 ... A8B4G0 38242118
    812304 8g4s:W (3.14) BS01 rna ? GO:0003735 ... E2RU77 38242118
    812305 8g4s:X (3.14) BS01 rna ? GO:0003735 ... V6T9I6 38242118
    812306 8g4s:Y (3.14) BS01 rna ? GO:0003735 ... A8B593 38242118
    812307 8g4s:Z (3.14) BS01 rna ? GO:0003735 ... A8B8H7 38242118
    812308 8g4s:a (3.14) BS01 rna ? GO:0003729 ... A8BQZ7 38242118
    812309 8g4s:a (3.14) BS02 ZN ? GO:0003729 ... A8BQZ7 38242118
    812310 8g4s:b (3.14) BS01 rna ? GO:0003735 ... V6TC68 38242118
    812311 8g4s:c (3.14) BS01 rna ? GO:0000028 ... A8B4F3 38242118
    812312 8g4s:d (3.14) BS01 rna ? GO:0003735 ... N/A 38242118
    812313 8g4s:e (3.14) BS01 rna ? GO:0003735 ... A0A644F843 38242118
    812314 8g4s:f (3.14) BS01 rna ? GO:0003735 ... A8BNY1 38242118
    812315 8g4v:A (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    812316 8g4v:A (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    812317 8g4v:A (1.2) BS03 NAJ 1.1.1.1 GO:0004022 ... P00327 N/A
    812318 8g4v:A (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    812319 8g4v:B (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    812320 8g4v:B (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    812321 8g4v:B (1.2) BS03 NAJ 1.1.1.1 GO:0004022 ... P00327 N/A
    812322 8g4v:B (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    812323 8g4w:I (3.8) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 37264140
    812324 8g4w:I (3.8) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 37264140
    812325 8g4w:I (3.8) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 37264140
    812326 8g4w:J (3.8) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    812327 8g4w:J (3.8) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    812328 8g4w:J (3.8) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    812329 8g4w:J (3.8) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    812330 8g4x:A (2.56) BS01 PIO ? GO:0004888 ... P62812 37730991
    812331 8g4x:A (2.56) BS02 Y4B ? GO:0004888 ... P62812 37730991
    812332 8g4x:A (2.56) BS03 ABU ? GO:0004888 ... P62812 37730991
    812333 8g4x:B (2.56) BS01 ABU ? GO:0004888 ... P63137 37730991
    812334 8g4x:B (2.56) BS02 Y4B ? GO:0004888 ... P63137 37730991
    812335 8g4x:C (2.56) BS01 ABU ? GO:0004888 ... P26049 37730991
    812336 8g4x:C (2.56) BS02 PIO ? GO:0004888 ... P26049 37730991
    812337 8g4x:C (2.56) BS03 Y4B ? GO:0004888 ... P26049 37730991
    812338 8g4x:D (2.56) BS01 MAN ? GO:0004888 ... P22723 37730991
    812339 8g4x:E (2.56) BS01 Y4B ? GO:0004888 ... P63137 37730991
    812340 8g4x:E (2.56) BS02 ABU ? GO:0004888 ... P63137 37730991
    812341 8g4z:A (1.7) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 38386706
    812342 8g4z:A (1.7) BS02 MN 1.5.1.3 GO:0004146 ... P0ABQ4 38386706
    812343 8g4z:A (1.7) BS03 MN 1.5.1.3 GO:0004146 ... P0ABQ4 38386706
    812344 8g50:A (1.7) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 38386706
    812345 8g50:A (1.7) BS02 MN 1.5.1.3 GO:0004146 ... P0ABQ4 38386706
    812346 8g50:A (1.7) BS03 MN 1.5.1.3 GO:0004146 ... P0ABQ4 38386706
    812347 8g50:B (1.7) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 38386706
    812348 8g50:B (1.7) BS02 MN 1.5.1.3 GO:0004146 ... P0ABQ4 38386706
    812349 8g50:B (1.7) BS03 MN 1.5.1.3 GO:0004146 ... P0ABQ4 38386706
    812350 8g57:A (3.07) BS01 dna ? GO:0000786 ... P84233 37058572
    812351 8g57:A (3.07) BS02 dna ? GO:0000786 ... P84233 37058572
    812352 8g57:B (3.07) BS01 dna ? GO:0003677 ... P62799 37058572
    812353 8g57:B (3.07) BS02 dna ? GO:0003677 ... P62799 37058572
    812354 8g57:C (3.07) BS01 dna ? GO:0000786 ... P04908 37058572
    812355 8g57:C (3.07) BS02 dna ? GO:0000786 ... P04908 37058572
    812356 8g57:D (3.07) BS01 dna ? GO:0000786 ... P06899 37058572
    812357 8g57:D (3.07) BS02 dna ? GO:0000786 ... P06899 37058572
    812358 8g57:E (3.07) BS01 dna ? GO:0000786 ... P84233 37058572
    812359 8g57:E (3.07) BS02 dna ? GO:0000786 ... P84233 37058572
    812360 8g57:F (3.07) BS01 dna ? GO:0003677 ... P62799 37058572
    812361 8g57:F (3.07) BS02 dna ? GO:0003677 ... P62799 37058572
    812362 8g57:G (3.07) BS01 dna ? GO:0000786 ... P04908 37058572
    812363 8g57:G (3.07) BS02 dna ? GO:0000786 ... P04908 37058572
    812364 8g57:H (3.07) BS01 dna ? GO:0000786 ... P06899 37058572
    812365 8g57:H (3.07) BS02 dna ? GO:0000786 ... P06899 37058572
    812366 8g57:K (3.07) BS01 dna 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0000122 ... Q8N6T7 37058572
    812367 8g59:R (2.64) BS01 YN9 ? GO:0001818 ... Q5NUL3 36862765
    812368 8g5c:A (2.2) BS01 ADP 2.3.3.8 GO:0003824 ... P53396 37076498
    812369 8g5c:A (2.2) BS02 COA 2.3.3.8 GO:0003824 ... P53396 37076498
    812370 8g5c:A (2.2) BS03 FLC 2.3.3.8 GO:0003824 ... P53396 37076498
    812371 8g5c:A (2.2) BS04 Q5B 2.3.3.8 GO:0003824 ... P53396 37076498
    812372 8g5c:A (2.2) BS05 COA 2.3.3.8 GO:0003824 ... P53396 37076498
    812373 8g5c:B (2.2) BS01 COA 2.3.3.8 GO:0003824 ... P53396 37076498
    812374 8g5c:B (2.2) BS02 COA 2.3.3.8 GO:0003824 ... P53396 37076498
    812375 8g5c:B (2.2) BS03 FLC 2.3.3.8 GO:0003824 ... P53396 37076498
    812376 8g5c:C (2.2) BS01 Q5B 2.3.3.8 GO:0003824 ... P53396 37076498
    812377 8g5c:C (2.2) BS02 COA 2.3.3.8 GO:0003824 ... P53396 37076498
    812378 8g5c:C (2.2) BS03 FLC 2.3.3.8 GO:0003824 ... P53396 37076498
    812379 8g5c:C (2.2) BS04 COA 2.3.3.8 GO:0003824 ... P53396 37076498
    812380 8g5c:D (2.2) BS01 COA 2.3.3.8 GO:0003824 ... P53396 37076498
    812381 8g5c:D (2.2) BS02 COA 2.3.3.8 GO:0003824 ... P53396 37076498
    812382 8g5c:D (2.2) BS03 FLC 2.3.3.8 GO:0003824 ... P53396 37076498
    812383 8g5d:A (2.5) BS01 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    812384 8g5d:A (2.5) BS02 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    812385 8g5d:A (2.5) BS03 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    812386 8g5d:B (2.5) BS01 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    812387 8g5d:B (2.5) BS02 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    812388 8g5d:B (2.5) BS03 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    812389 8g5d:B (2.5) BS04 Q5B 2.3.3.8 GO:0003824 ... P53396 37076498
    812390 8g5d:C (2.5) BS01 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    812391 8g5d:C (2.5) BS02 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    812392 8g5d:C (2.5) BS03 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    812393 8g5d:D (2.5) BS01 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    812394 8g5d:D (2.5) BS02 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    812395 8g5d:D (2.5) BS03 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    812396 8g5d:D (2.5) BS04 Q5B 2.3.3.8 GO:0003824 ... P53396 37076498
    812397 8g5d:D (2.5) BS05 ADP 2.3.3.8 GO:0003824 ... P53396 37076498
    812398 8g5e:A (1.98) BS01 YOH 2.1.1.366 N/A Q15047 N/A
    812399 8g5f:A (2.64) BS01 PIO ? GO:0004888 ... P26049 37730991
    812400 8g5f:A (2.64) BS02 Y4B ? GO:0004888 ... P26049 37730991

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).