SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    812601 8g5z:LF (2.64) BS02 rna ? GO:0000463 ... P18124 37020024
    812602 8g5z:LG (2.64) BS01 rna ? GO:0000470 ... P62424 37020024
    812603 8g5z:LG (2.64) BS02 rna ? GO:0000470 ... P62424 37020024
    812604 8g5z:LH (2.64) BS01 rna ? GO:0002181 ... P32969 37020024
    812605 8g5z:LH (2.64) BS02 MG ? GO:0002181 ... P32969 37020024
    812606 8g5z:LI (2.64) BS01 rna ? GO:0000122 ... P27635 37020024
    812607 8g5z:LI (2.64) BS02 rna ? GO:0000122 ... P27635 37020024
    812608 8g5z:LI (2.64) BS03 MG ? GO:0000122 ... P27635 37020024
    812609 8g5z:LJ (2.64) BS01 rna ? GO:0000027 ... P62913 37020024
    812610 8g5z:LJ (2.64) BS02 rna ? GO:0000027 ... P62913 37020024
    812611 8g5z:LJ (2.64) BS03 rna ? GO:0000027 ... P62913 37020024
    812612 8g5z:LK (2.64) BS01 rna ? GO:0003735 ... P30050 37020024
    812613 8g5z:LL (2.64) BS01 rna ? GO:0001824 ... P26373 37020024
    812614 8g5z:LL (2.64) BS02 rna ? GO:0001824 ... P26373 37020024
    812615 8g5z:LM (2.64) BS01 rna ? GO:0003723 ... P50914 37020024
    812616 8g5z:LN (2.64) BS01 rna ? GO:0002181 ... P61313 37020024
    812617 8g5z:LN (2.64) BS02 rna ? GO:0002181 ... P61313 37020024
    812618 8g5z:LN (2.64) BS03 MG ? GO:0002181 ... P61313 37020024
    812619 8g5z:LO (2.64) BS01 rna ? GO:0002181 ... P40429 37020024
    812620 8g5z:LP (2.64) BS01 rna ? GO:0003735 ... P18621 37020024
    812621 8g5z:LP (2.64) BS02 rna ? GO:0003735 ... P18621 37020024
    812622 8g5z:LQ (2.64) BS01 rna ? GO:0002181 ... Q07020 37020024
    812623 8g5z:LR (2.64) BS01 rna ? GO:0002181 ... P84098 37020024
    812624 8g5z:LR (2.64) BS02 rna ? GO:0002181 ... P84098 37020024
    812625 8g5z:LS (2.64) BS01 rna ? GO:0002181 ... Q02543 37020024
    812626 8g5z:LS (2.64) BS02 rna ? GO:0002181 ... Q02543 37020024
    812627 8g5z:LT (2.64) BS01 rna ? GO:0002181 ... P46778 37020024
    812628 8g5z:LT (2.64) BS02 rna ? GO:0002181 ... P46778 37020024
    812629 8g5z:LU (2.64) BS01 rna ? GO:0003735 ... P35268 37020024
    812630 8g5z:LV (2.64) BS01 rna ? GO:0000122 ... P62829 37020024
    812631 8g5z:LW (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    812632 8g5z:LW (2.64) BS02 rna N/A GO:0003735 ... N/A 37020024
    812633 8g5z:LX (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    812634 8g5z:LX (2.64) BS02 rna N/A GO:0003735 ... N/A 37020024
    812635 8g5z:LY (2.64) BS01 rna ? GO:0002181 ... P61254 37020024
    812636 8g5z:LY (2.64) BS02 rna ? GO:0002181 ... P61254 37020024
    812637 8g5z:LZ (2.64) BS01 rna ? GO:0002181 ... P61353 37020024
    812638 8g5z:La (2.64) BS01 rna ? GO:0002181 ... P46776 37020024
    812639 8g5z:Lb (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    812640 8g5z:Lc (2.64) BS01 rna ? GO:0003723 ... P62888 37020024
    812641 8g5z:Ld (2.64) BS01 rna ? GO:0003735 ... P62899 37020024
    812642 8g5z:Le (2.64) BS01 rna ? GO:0002181 ... P62910 37020024
    812643 8g5z:Le (2.64) BS02 MG ? GO:0002181 ... P62910 37020024
    812644 8g5z:Lf (2.64) BS01 rna ? GO:0000049 ... P18077 37020024
    812645 8g5z:Lg (2.64) BS01 rna ? GO:0002181 ... P49207 37020024
    812646 8g5z:Lg (2.64) BS02 ZN ? GO:0002181 ... P49207 37020024
    812647 8g5z:Lg (2.64) BS03 MG ? GO:0002181 ... P49207 37020024
    812648 8g5z:Lh (2.64) BS01 rna ? GO:0000463 ... P42766 37020024
    812649 8g5z:Lh (2.64) BS02 rna ? GO:0000463 ... P42766 37020024
    812650 8g5z:Li (2.64) BS01 rna ? GO:0002181 ... Q9Y3U8 37020024
    812651 8g5z:Lj (2.64) BS01 rna ? GO:0003735 ... P61927 37020024
    812652 8g5z:Lj (2.64) BS02 rna ? GO:0003735 ... P61927 37020024
    812653 8g5z:Lj (2.64) BS03 ZN ? GO:0003735 ... P61927 37020024
    812654 8g5z:Lk (2.64) BS01 rna ? GO:0001501 ... P63173 37020024
    812655 8g5z:Ll (2.64) BS01 rna ? GO:0002181 ... P62891 37020024
    812656 8g5z:Ll (2.64) BS02 rna ? GO:0002181 ... P62891 37020024
    812657 8g5z:Lm (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    812658 8g5z:Lm (2.64) BS02 ZN N/A GO:0003735 ... N/A 37020024
    812659 8g5z:Lo (2.64) BS01 rna ? GO:0003735 ... J3KQN4 37020024
    812660 8g5z:Lo (2.64) BS02 rna ? GO:0003735 ... J3KQN4 37020024
    812661 8g5z:Lo (2.64) BS03 3H3 ? GO:0003735 ... J3KQN4 37020024
    812662 8g5z:Lo (2.64) BS04 ZN ? GO:0003735 ... J3KQN4 37020024
    812663 8g5z:Lp (2.64) BS01 rna ? GO:0002181 ... P61513 37020024
    812664 8g5z:Lp (2.64) BS02 ZN ? GO:0002181 ... P61513 37020024
    812665 8g5z:Lq (2.64) BS01 rna ? N/A P05388 37020024
    812666 8g5z:Lr (2.64) BS01 rna ? GO:0002181 ... P46779 37020024
    812667 8g5z:Lz (2.64) BS01 rna N/A GO:0003723 ... N/A 37020024
    812668 8g5z:SA (2.64) BS01 rna ? GO:0003735 ... P08865 37020024
    812669 8g5z:SB (2.64) BS01 rna ? GO:0003735 ... P61247 37020024
    812670 8g5z:SB (2.64) BS02 rna ? GO:0003735 ... P61247 37020024
    812671 8g5z:SC (2.64) BS01 rna ? GO:0003723 ... P15880 37020024
    812672 8g5z:SD (2.64) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37020024
    812673 8g5z:SE (2.64) BS01 rna N/A GO:0003723 ... N/A 37020024
    812674 8g5z:SF (2.64) BS01 rna ? GO:0000028 ... P46782 37020024
    812675 8g5z:SF (2.64) BS02 MG ? GO:0000028 ... P46782 37020024
    812676 8g5z:SG (2.64) BS01 rna ? GO:0000082 ... P62753 37020024
    812677 8g5z:SH (2.64) BS01 rna ? GO:0001843 ... P62081 37020024
    812678 8g5z:SI (2.64) BS01 rna ? GO:0000462 ... P62241 37020024
    812679 8g5z:SI (2.64) BS02 rna ? GO:0000462 ... P62241 37020024
    812680 8g5z:SJ (2.64) BS01 rna ? GO:0002181 ... P46781 37020024
    812681 8g5z:SK (2.64) BS01 rna N/A N/A N/A 37020024
    812682 8g5z:SL (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    812683 8g5z:SM (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    812684 8g5z:SN (2.64) BS01 rna ? GO:0002181 ... P62277 37020024
    812685 8g5z:SN (2.64) BS02 rna ? GO:0002181 ... P62277 37020024
    812686 8g5z:SO (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    812687 8g5z:SO (2.64) BS02 MG N/A GO:0003735 ... N/A 37020024
    812688 8g5z:SP (2.64) BS01 rna N/A GO:0003723 ... N/A 37020024
    812689 8g5z:SP (2.64) BS02 rna N/A GO:0003723 ... N/A 37020024
    812690 8g5z:SQ (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    812691 8g5z:SR (2.64) BS01 rna ? GO:0002181 ... P08708 37020024
    812692 8g5z:SS (2.64) BS01 rna N/A GO:0003676 ... N/A 37020024
    812693 8g5z:SS (2.64) BS02 rna N/A GO:0003676 ... N/A 37020024
    812694 8g5z:SS (2.64) BS03 rna N/A GO:0003676 ... N/A 37020024
    812695 8g5z:ST (2.64) BS01 rna ? GO:0000028 ... P39019 37020024
    812696 8g5z:SU (2.64) BS01 rna N/A GO:0003723 ... N/A 37020024
    812697 8g5z:SW (2.64) BS01 rna ? GO:0002181 ... P62244 37020024
    812698 8g5z:SX (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    812699 8g5z:SX (2.64) BS02 rna N/A GO:0003735 ... N/A 37020024
    812700 8g5z:SX (2.64) BS03 MG N/A GO:0003735 ... N/A 37020024
    812701 8g5z:SY (2.64) BS01 rna ? GO:0002181 ... P62847 37020024
    812702 8g5z:SZ (2.64) BS01 rna N/A N/A N/A 37020024
    812703 8g5z:SZ (2.64) BS02 rna N/A N/A N/A 37020024
    812704 8g5z:Sa (2.64) BS01 rna ? GO:0003735 ... P62854 37020024
    812705 8g5z:Sa (2.64) BS02 ZN ? GO:0003735 ... P62854 37020024
    812706 8g5z:Sb (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    812707 8g5z:Sc (2.64) BS01 rna ? GO:0000028 ... P62857 37020024
    812708 8g5z:Sd (2.64) BS01 rna ? GO:0002181 ... P62273 37020024
    812709 8g5z:Sd (2.64) BS02 ZN ? GO:0002181 ... P62273 37020024
    812710 8g5z:Sd (2.64) BS03 MG ? GO:0002181 ... P62273 37020024
    812711 8g5z:Se (2.64) BS01 rna ? GO:0003735 ... P62861 37020024
    812712 8g5z:Se (2.64) BS02 rna ? GO:0003735 ... P62861 37020024
    812713 8g5z:Sf (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    812714 8g5z:Sf (2.64) BS02 ZN N/A GO:0003735 ... N/A 37020024
    812715 8g5z:Sg (2.64) BS01 rna ? GO:0001891 ... P63244 37020024
    812716 8g60:EF (2.54) BS01 rna 3.6.5.- GO:0000049 ... P68104 37020024
    812717 8g60:EF (2.54) BS02 rna 3.6.5.- GO:0000049 ... P68104 37020024
    812718 8g60:EF (2.54) BS03 PHE 3.6.5.- GO:0000049 ... P68104 37020024
    812719 8g60:EF (2.54) BS04 GSP 3.6.5.- GO:0000049 ... P68104 37020024
    812720 8g60:EF (2.54) BS05 ZIY 3.6.5.- GO:0000049 ... P68104 37020024
    812721 8g60:EF (2.54) BS06 MG 3.6.5.- GO:0000049 ... P68104 37020024
    812722 8g60:LA (2.54) BS01 rna N/A GO:0003723 ... N/A 37020024
    812723 8g60:LA (2.54) BS02 rna N/A GO:0003723 ... N/A 37020024
    812724 8g60:LA (2.54) BS03 MG N/A GO:0003723 ... N/A 37020024
    812725 8g60:LB (2.54) BS01 rna ? GO:0002181 ... P39023 37020024
    812726 8g60:LC (2.54) BS01 rna ? GO:0002181 ... P36578 37020024
    812727 8g60:LC (2.54) BS02 rna ? GO:0002181 ... P36578 37020024
    812728 8g60:LD (2.54) BS01 rna ? GO:0000027 ... P46777 37020024
    812729 8g60:LD (2.54) BS02 rna ? GO:0000027 ... P46777 37020024
    812730 8g60:LE (2.54) BS01 rna ? GO:0002181 ... Q02878 37020024
    812731 8g60:LF (2.54) BS01 rna ? GO:0000463 ... P18124 37020024
    812732 8g60:LF (2.54) BS02 rna ? GO:0000463 ... P18124 37020024
    812733 8g60:LG (2.54) BS01 rna ? GO:0000470 ... P62424 37020024
    812734 8g60:LG (2.54) BS02 rna ? GO:0000470 ... P62424 37020024
    812735 8g60:LH (2.54) BS01 rna ? GO:0002181 ... P32969 37020024
    812736 8g60:LI (2.54) BS01 rna ? GO:0000122 ... P27635 37020024
    812737 8g60:LI (2.54) BS02 rna ? GO:0000122 ... P27635 37020024
    812738 8g60:LI (2.54) BS03 rna ? GO:0000122 ... P27635 37020024
    812739 8g60:LI (2.54) BS04 MG ? GO:0000122 ... P27635 37020024
    812740 8g60:LJ (2.54) BS01 rna ? GO:0000027 ... P62913 37020024
    812741 8g60:LJ (2.54) BS02 rna ? GO:0000027 ... P62913 37020024
    812742 8g60:LJ (2.54) BS03 rna ? GO:0000027 ... P62913 37020024
    812743 8g60:LK (2.54) BS01 rna ? GO:0002181 ... P30050 37020024
    812744 8g60:LL (2.54) BS01 rna ? GO:0001824 ... P26373 37020024
    812745 8g60:LL (2.54) BS02 rna ? GO:0001824 ... P26373 37020024
    812746 8g60:LL (2.54) BS03 MG ? GO:0001824 ... P26373 37020024
    812747 8g60:LM (2.54) BS01 rna ? GO:0002181 ... P50914 37020024
    812748 8g60:LN (2.54) BS01 rna ? GO:0002181 ... P61313 37020024
    812749 8g60:LN (2.54) BS02 rna ? GO:0002181 ... P61313 37020024
    812750 8g60:LO (2.54) BS01 rna ? GO:0002181 ... P40429 37020024
    812751 8g60:LP (2.54) BS01 rna ? GO:0002181 ... P18621 37020024
    812752 8g60:LP (2.54) BS02 rna ? GO:0002181 ... P18621 37020024
    812753 8g60:LQ (2.54) BS01 rna ? GO:0002181 ... Q07020 37020024
    812754 8g60:LR (2.54) BS01 rna ? GO:0002181 ... P84098 37020024
    812755 8g60:LR (2.54) BS02 rna ? GO:0002181 ... P84098 37020024
    812756 8g60:LS (2.54) BS01 rna ? GO:0002181 ... Q02543 37020024
    812757 8g60:LS (2.54) BS02 rna ? GO:0002181 ... Q02543 37020024
    812758 8g60:LT (2.54) BS01 rna ? GO:0002181 ... P46778 37020024
    812759 8g60:LT (2.54) BS02 rna ? GO:0002181 ... P46778 37020024
    812760 8g60:LU (2.54) BS01 rna ? GO:0002181 ... P35268 37020024
    812761 8g60:LV (2.54) BS01 rna ? GO:0000122 ... P62829 37020024
    812762 8g60:LW (2.54) BS01 rna ? GO:0000027 ... P83731 37020024
    812763 8g60:LW (2.54) BS02 rna ? GO:0000027 ... P83731 37020024
    812764 8g60:LX (2.54) BS01 rna ? GO:0002181 ... P62750 37020024
    812765 8g60:LX (2.54) BS02 rna ? GO:0002181 ... P62750 37020024
    812766 8g60:LY (2.54) BS01 rna ? GO:0002181 ... P61254 37020024
    812767 8g60:LY (2.54) BS02 rna ? GO:0002181 ... P61254 37020024
    812768 8g60:LZ (2.54) BS01 rna ? GO:0002181 ... P61353 37020024
    812769 8g60:La (2.54) BS01 rna ? GO:0002181 ... P46776 37020024
    812770 8g60:Lb (2.54) BS01 rna ? GO:0002181 ... P47914 37020024
    812771 8g60:Lc (2.54) BS01 rna ? GO:0002181 ... P62888 37020024
    812772 8g60:Ld (2.54) BS01 rna ? GO:0002181 ... P62899 37020024
    812773 8g60:Le (2.54) BS01 rna ? GO:0002181 ... P62910 37020024
    812774 8g60:Le (2.54) BS02 MG ? GO:0002181 ... P62910 37020024
    812775 8g60:Lf (2.54) BS01 rna ? GO:0000049 ... P18077 37020024
    812776 8g60:Lf (2.54) BS02 MG ? GO:0000049 ... P18077 37020024
    812777 8g60:Lg (2.54) BS01 rna ? GO:0002181 ... P49207 37020024
    812778 8g60:Lg (2.54) BS02 ZN ? GO:0002181 ... P49207 37020024
    812779 8g60:Lg (2.54) BS03 MG ? GO:0002181 ... P49207 37020024
    812780 8g60:Lh (2.54) BS01 rna ? GO:0000463 ... P42766 37020024
    812781 8g60:Lh (2.54) BS02 rna ? GO:0000463 ... P42766 37020024
    812782 8g60:Li (2.54) BS01 rna ? GO:0002181 ... Q9Y3U8 37020024
    812783 8g60:Lj (2.54) BS01 rna ? GO:0002181 ... P61927 37020024
    812784 8g60:Lj (2.54) BS02 rna ? GO:0002181 ... P61927 37020024
    812785 8g60:Lj (2.54) BS03 ZN ? GO:0002181 ... P61927 37020024
    812786 8g60:Lk (2.54) BS01 rna ? GO:0001501 ... P63173 37020024
    812787 8g60:Ll (2.54) BS01 rna ? GO:0002181 ... P62891 37020024
    812788 8g60:Ll (2.54) BS02 rna ? GO:0002181 ... P62891 37020024
    812789 8g60:Lm (2.54) BS01 rna N/A GO:0003735 ... N/A 37020024
    812790 8g60:Lm (2.54) BS02 ZN N/A GO:0003735 ... N/A 37020024
    812791 8g60:Lo (2.54) BS01 rna ? GO:0003735 ... J3KQN4 37020024
    812792 8g60:Lo (2.54) BS02 rna ? GO:0003735 ... J3KQN4 37020024
    812793 8g60:Lo (2.54) BS03 ZN ? GO:0003735 ... J3KQN4 37020024
    812794 8g60:Lp (2.54) BS01 rna ? GO:0002181 ... P61513 37020024
    812795 8g60:Lp (2.54) BS02 ZN ? GO:0002181 ... P61513 37020024
    812796 8g60:Lq (2.54) BS01 rna ? GO:0002181 ... P05388 37020024
    812797 8g60:Lr (2.54) BS01 rna ? GO:0002181 ... P46779 37020024
    812798 8g60:Lz (2.54) BS01 rna ? GO:0002181 ... P62906 37020024
    812799 8g60:SA (2.54) BS01 rna ? GO:0000028 ... P08865 37020024
    812800 8g60:SB (2.54) BS01 rna ? GO:0002181 ... P61247 37020024

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).