SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    812801 8g60:SC (2.54) BS01 rna ? GO:0002181 ... P15880 37020024
    812802 8g60:SD (2.54) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37020024
    812803 8g60:SE (2.54) BS01 rna ? GO:0002181 ... P62701 37020024
    812804 8g60:SF (2.54) BS01 rna ? GO:0000028 ... P46782 37020024
    812805 8g60:SF (2.54) BS02 MG ? GO:0000028 ... P46782 37020024
    812806 8g60:SG (2.54) BS01 rna ? GO:0000082 ... P62753 37020024
    812807 8g60:SH (2.54) BS01 rna ? GO:0001843 ... P62081 37020024
    812808 8g60:SI (2.54) BS01 rna ? GO:0000462 ... P62241 37020024
    812809 8g60:SI (2.54) BS02 rna ? GO:0000462 ... P62241 37020024
    812810 8g60:SJ (2.54) BS01 rna ? GO:0002181 ... P46781 37020024
    812811 8g60:SK (2.54) BS01 rna ? GO:0002181 ... P46783 37020024
    812812 8g60:SL (2.54) BS01 rna ? GO:0002181 ... P62280 37020024
    812813 8g60:SM (2.54) BS01 rna ? GO:0002181 ... P25398 37020024
    812814 8g60:SN (2.54) BS01 rna ? GO:0002181 ... P62277 37020024
    812815 8g60:SO (2.54) BS01 rna ? GO:0000028 ... P62263 37020024
    812816 8g60:SP (2.54) BS01 rna ? GO:0000028 ... P62841 37020024
    812817 8g60:SP (2.54) BS02 rna ? GO:0000028 ... P62841 37020024
    812818 8g60:SQ (2.54) BS01 rna ? GO:0000462 ... P62249 37020024
    812819 8g60:SR (2.54) BS01 rna ? GO:0002181 ... P08708 37020024
    812820 8g60:SS (2.54) BS01 rna ? GO:0002181 ... P62269 37020024
    812821 8g60:SS (2.54) BS02 rna ? GO:0002181 ... P62269 37020024
    812822 8g60:SS (2.54) BS03 rna ? GO:0002181 ... P62269 37020024
    812823 8g60:SS (2.54) BS04 MG ? GO:0002181 ... P62269 37020024
    812824 8g60:ST (2.54) BS01 rna ? GO:0000028 ... P39019 37020024
    812825 8g60:SU (2.54) BS01 rna ? GO:0002181 ... P60866 37020024
    812826 8g60:SW (2.54) BS01 rna ? GO:0002181 ... P62244 37020024
    812827 8g60:SX (2.54) BS01 rna N/A GO:0003735 ... N/A 37020024
    812828 8g60:SY (2.54) BS01 rna ? GO:0002181 ... P62847 37020024
    812829 8g60:SZ (2.54) BS01 rna ? GO:0002181 ... P62851 37020024
    812830 8g60:SZ (2.54) BS02 rna ? GO:0002181 ... P62851 37020024
    812831 8g60:Sa (2.54) BS01 rna ? GO:0002181 ... P62854 37020024
    812832 8g60:Sa (2.54) BS02 ZN ? GO:0002181 ... P62854 37020024
    812833 8g60:Sb (2.54) BS01 rna ? GO:0000028 ... P42677 37020024
    812834 8g60:Sc (2.54) BS01 rna ? GO:0000028 ... P62857 37020024
    812835 8g60:Sd (2.54) BS01 rna ? GO:0002181 ... P62273 37020024
    812836 8g60:Sd (2.54) BS02 MG ? GO:0002181 ... P62273 37020024
    812837 8g60:Sd (2.54) BS03 ZN ? GO:0002181 ... P62273 37020024
    812838 8g60:Se (2.54) BS01 rna ? GO:0002181 ... P62861 37020024
    812839 8g60:Sf (2.54) BS01 rna ? GO:0002181 ... P62979 37020024
    812840 8g60:Sg (2.54) BS01 rna ? GO:0001891 ... P63244 37020024
    812841 8g61:5A (2.94) BS01 rna N/A GO:0003723 ... N/A 37020024
    812842 8g61:5A (2.94) BS02 rna N/A GO:0003723 ... N/A 37020024
    812843 8g61:5A (2.94) BS03 MG N/A GO:0003723 ... N/A 37020024
    812844 8g61:LA (2.94) BS01 rna N/A GO:0003723 ... N/A 37020024
    812845 8g61:LA (2.94) BS02 rna N/A GO:0003723 ... N/A 37020024
    812846 8g61:LA (2.94) BS03 MG N/A GO:0003723 ... N/A 37020024
    812847 8g61:LB (2.94) BS01 rna ? GO:0002181 ... P39023 37020024
    812848 8g61:LC (2.94) BS01 rna ? GO:0002181 ... P36578 37020024
    812849 8g61:LC (2.94) BS02 rna ? GO:0002181 ... P36578 37020024
    812850 8g61:LD (2.94) BS01 rna ? GO:0000027 ... P46777 37020024
    812851 8g61:LD (2.94) BS02 rna ? GO:0000027 ... P46777 37020024
    812852 8g61:LE (2.94) BS01 rna ? GO:0002181 ... Q02878 37020024
    812853 8g61:LF (2.94) BS01 rna ? GO:0000463 ... P18124 37020024
    812854 8g61:LF (2.94) BS02 rna ? GO:0000463 ... P18124 37020024
    812855 8g61:LG (2.94) BS01 rna ? GO:0000470 ... P62424 37020024
    812856 8g61:LG (2.94) BS02 rna ? GO:0000470 ... P62424 37020024
    812857 8g61:LH (2.94) BS01 rna ? GO:0002181 ... P32969 37020024
    812858 8g61:LI (2.94) BS01 rna ? GO:0000122 ... P27635 37020024
    812859 8g61:LI (2.94) BS02 rna ? GO:0000122 ... P27635 37020024
    812860 8g61:LI (2.94) BS03 rna ? GO:0000122 ... P27635 37020024
    812861 8g61:LJ (2.94) BS01 rna ? GO:0000027 ... P62913 37020024
    812862 8g61:LJ (2.94) BS02 rna ? GO:0000027 ... P62913 37020024
    812863 8g61:LL (2.94) BS01 rna ? GO:0001824 ... P26373 37020024
    812864 8g61:LL (2.94) BS02 rna ? GO:0001824 ... P26373 37020024
    812865 8g61:LM (2.94) BS01 rna ? GO:0002181 ... P50914 37020024
    812866 8g61:LN (2.94) BS01 rna ? GO:0002181 ... P61313 37020024
    812867 8g61:LN (2.94) BS02 rna ? GO:0002181 ... P61313 37020024
    812868 8g61:LN (2.94) BS03 MG ? GO:0002181 ... P61313 37020024
    812869 8g61:LO (2.94) BS01 rna ? GO:0002181 ... P40429 37020024
    812870 8g61:LP (2.94) BS01 rna ? GO:0002181 ... P18621 37020024
    812871 8g61:LP (2.94) BS02 rna ? GO:0002181 ... P18621 37020024
    812872 8g61:LQ (2.94) BS01 rna ? GO:0002181 ... Q07020 37020024
    812873 8g61:LR (2.94) BS01 rna ? GO:0002181 ... P84098 37020024
    812874 8g61:LR (2.94) BS02 rna ? GO:0002181 ... P84098 37020024
    812875 8g61:LS (2.94) BS01 rna ? GO:0002181 ... Q02543 37020024
    812876 8g61:LS (2.94) BS02 rna ? GO:0002181 ... Q02543 37020024
    812877 8g61:LT (2.94) BS01 rna ? GO:0002181 ... P46778 37020024
    812878 8g61:LT (2.94) BS02 rna ? GO:0002181 ... P46778 37020024
    812879 8g61:LU (2.94) BS01 rna ? GO:0002181 ... P35268 37020024
    812880 8g61:LV (2.94) BS01 rna ? GO:0000122 ... P62829 37020024
    812881 8g61:LV (2.94) BS02 rna ? GO:0000122 ... P62829 37020024
    812882 8g61:LW (2.94) BS01 rna ? GO:0000027 ... P83731 37020024
    812883 8g61:LW (2.94) BS02 rna ? GO:0000027 ... P83731 37020024
    812884 8g61:LX (2.94) BS01 rna ? GO:0002181 ... P62750 37020024
    812885 8g61:LX (2.94) BS02 rna ? GO:0002181 ... P62750 37020024
    812886 8g61:LY (2.94) BS01 rna ? GO:0002181 ... P61254 37020024
    812887 8g61:LY (2.94) BS02 rna ? GO:0002181 ... P61254 37020024
    812888 8g61:LZ (2.94) BS01 rna ? GO:0002181 ... P61353 37020024
    812889 8g61:La (2.94) BS01 rna ? GO:0002181 ... P46776 37020024
    812890 8g61:Lb (2.94) BS01 rna ? GO:0002181 ... P47914 37020024
    812891 8g61:Lc (2.94) BS01 rna ? GO:0002181 ... P62888 37020024
    812892 8g61:Ld (2.94) BS01 rna ? GO:0002181 ... P62899 37020024
    812893 8g61:Le (2.94) BS01 rna ? GO:0002181 ... P62910 37020024
    812894 8g61:Le (2.94) BS02 MG ? GO:0002181 ... P62910 37020024
    812895 8g61:Lf (2.94) BS01 rna ? GO:0000049 ... P18077 37020024
    812896 8g61:Lg (2.94) BS01 rna ? GO:0002181 ... P49207 37020024
    812897 8g61:Lg (2.94) BS02 ZN ? GO:0002181 ... P49207 37020024
    812898 8g61:Lh (2.94) BS01 rna ? GO:0000463 ... P42766 37020024
    812899 8g61:Lh (2.94) BS02 rna ? GO:0000463 ... P42766 37020024
    812900 8g61:Li (2.94) BS01 rna ? GO:0002181 ... Q9Y3U8 37020024
    812901 8g61:Lj (2.94) BS01 rna ? GO:0002181 ... P61927 37020024
    812902 8g61:Lj (2.94) BS02 rna ? GO:0002181 ... P61927 37020024
    812903 8g61:Lj (2.94) BS03 ZN ? GO:0002181 ... P61927 37020024
    812904 8g61:Lk (2.94) BS01 rna ? GO:0001501 ... P63173 37020024
    812905 8g61:Ll (2.94) BS01 rna ? GO:0002181 ... P62891 37020024
    812906 8g61:Ll (2.94) BS02 rna ? GO:0002181 ... P62891 37020024
    812907 8g61:Lm (2.94) BS01 rna N/A GO:0003735 ... N/A 37020024
    812908 8g61:Lm (2.94) BS02 ZN N/A GO:0003735 ... N/A 37020024
    812909 8g61:Lo (2.94) BS01 rna ? GO:0003735 ... J3KQN4 37020024
    812910 8g61:Lo (2.94) BS02 rna ? GO:0003735 ... J3KQN4 37020024
    812911 8g61:Lo (2.94) BS03 3H3 ? GO:0003735 ... J3KQN4 37020024
    812912 8g61:Lo (2.94) BS04 ZN ? GO:0003735 ... J3KQN4 37020024
    812913 8g61:Lp (2.94) BS01 rna ? GO:0002181 ... P61513 37020024
    812914 8g61:Lp (2.94) BS02 ZN ? GO:0002181 ... P61513 37020024
    812915 8g61:Lr (2.94) BS01 rna ? GO:0002181 ... P46779 37020024
    812916 8g61:Lz (2.94) BS01 rna ? GO:0002181 ... P62906 37020024
    812917 8g61:SA (2.94) BS01 rna ? GO:0000028 ... P08865 37020024
    812918 8g61:SB (2.94) BS01 rna ? GO:0002181 ... P61247 37020024
    812919 8g61:SC (2.94) BS01 rna ? GO:0002181 ... P15880 37020024
    812920 8g61:SD (2.94) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37020024
    812921 8g61:SE (2.94) BS01 rna ? GO:0002181 ... P62701 37020024
    812922 8g61:SF (2.94) BS01 rna ? GO:0000028 ... P46782 37020024
    812923 8g61:SF (2.94) BS02 rna ? GO:0000028 ... P46782 37020024
    812924 8g61:SG (2.94) BS01 rna ? GO:0000082 ... P62753 37020024
    812925 8g61:SH (2.94) BS01 rna ? GO:0001843 ... P62081 37020024
    812926 8g61:SI (2.94) BS01 rna ? GO:0000462 ... P62241 37020024
    812927 8g61:SI (2.94) BS02 rna ? GO:0000462 ... P62241 37020024
    812928 8g61:SJ (2.94) BS01 rna ? GO:0002181 ... P46781 37020024
    812929 8g61:SK (2.94) BS01 rna ? GO:0002181 ... P46783 37020024
    812930 8g61:SL (2.94) BS01 rna ? GO:0002181 ... P62280 37020024
    812931 8g61:SM (2.94) BS01 rna ? GO:0002181 ... P25398 37020024
    812932 8g61:SN (2.94) BS01 rna ? GO:0002181 ... P62277 37020024
    812933 8g61:SO (2.94) BS01 rna ? GO:0000028 ... P62263 37020024
    812934 8g61:SP (2.94) BS01 rna ? GO:0000028 ... P62841 37020024
    812935 8g61:SP (2.94) BS02 rna ? GO:0000028 ... P62841 37020024
    812936 8g61:SP (2.94) BS03 rna ? GO:0000028 ... P62841 37020024
    812937 8g61:SP (2.94) BS04 rna ? GO:0000028 ... P62841 37020024
    812938 8g61:SQ (2.94) BS01 rna ? GO:0000462 ... P62249 37020024
    812939 8g61:SR (2.94) BS01 rna ? GO:0002181 ... P08708 37020024
    812940 8g61:SS (2.94) BS01 rna ? GO:0002181 ... P62269 37020024
    812941 8g61:SS (2.94) BS02 rna ? GO:0002181 ... P62269 37020024
    812942 8g61:ST (2.94) BS01 rna ? GO:0000028 ... P39019 37020024
    812943 8g61:SU (2.94) BS01 rna ? GO:0002181 ... P60866 37020024
    812944 8g61:SW (2.94) BS01 rna ? GO:0002181 ... P62244 37020024
    812945 8g61:SX (2.94) BS01 rna N/A GO:0003735 ... N/A 37020024
    812946 8g61:SX (2.94) BS02 rna N/A GO:0003735 ... N/A 37020024
    812947 8g61:SY (2.94) BS01 rna ? GO:0002181 ... P62847 37020024
    812948 8g61:SZ (2.94) BS01 rna ? GO:0002181 ... P62851 37020024
    812949 8g61:Sa (2.94) BS01 rna ? GO:0002181 ... P62854 37020024
    812950 8g61:Sa (2.94) BS02 ZN ? GO:0002181 ... P62854 37020024
    812951 8g61:Sb (2.94) BS01 rna ? GO:0000028 ... P42677 37020024
    812952 8g61:Sc (2.94) BS01 rna ? GO:0000028 ... P62857 37020024
    812953 8g61:Sd (2.94) BS01 rna ? GO:0002181 ... P62273 37020024
    812954 8g61:Sd (2.94) BS02 ZN ? GO:0002181 ... P62273 37020024
    812955 8g61:Se (2.94) BS01 rna ? GO:0002181 ... P62861 37020024
    812956 8g61:Sf (2.94) BS01 rna ? GO:0002181 ... P62979 37020024
    812957 8g61:Sg (2.94) BS01 rna ? GO:0001891 ... P63244 37020024
    812958 8g62:A (2.17) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    812959 8g62:A (2.17) BS02 YOO 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    812960 8g62:A (2.17) BS03 YOO 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    812961 8g62:A (2.17) BS04 YOO 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    812962 8g62:B (2.17) BS01 YOO 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    812963 8g62:B (2.17) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    812964 8g62:B (2.17) BS03 YOO 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    812965 8g62:B (2.17) BS04 YOO 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    812966 8g62:C (2.17) BS01 YOO 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    812967 8g62:C (2.17) BS02 YOO 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    812968 8g62:C (2.17) BS03 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    812969 8g62:C (2.17) BS04 YOO 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    812970 8g63:A (2.5) BS01 YXT 2.7.10.1 GO:0004672 ... P00533 37827156
    812971 8g64:A (1.6) BS01 FMN ? GO:0000166 ... Q8RI14 37302554
    812972 8g64:A (1.6) BS02 HEM ? GO:0000166 ... Q8RI14 37302554
    812973 8g65:A (1.45) BS01 YW9 3.1.3.48 GO:0004725 ... P18031 37086179
    812974 8g65:B (1.45) BS01 YW9 3.1.3.48 GO:0004725 ... P18031 37086179
    812975 8g66:B (3.45) BS01 ZN ? GO:0005515 ... Q96SW2 N/A
    812976 8g66:B (3.45) BS02 YOT ? GO:0005515 ... Q96SW2 N/A
    812977 8g66:C (3.45) BS01 YOT 2.7.11.1 GO:0000775 ... P48729 N/A
    812978 8g66:E (3.45) BS01 ZN ? GO:0005515 ... Q96SW2 N/A
    812979 8g67:A (1.53) BS01 KB8 3.1.3.48 GO:0004725 ... P18031 37086179
    812980 8g67:A (1.53) BS02 KB8 3.1.3.48 GO:0004725 ... P18031 37086179
    812981 8g68:A (1.82) BS01 YXF 3.1.3.48 GO:0004725 ... P18031 37086179
    812982 8g68:B (1.82) BS01 YXF 3.1.3.48 GO:0004725 ... P18031 37086179
    812983 8g69:A (1.53) BS01 YXN 3.1.3.48 GO:0004725 ... P18031 37086179
    812984 8g69:B (1.53) BS01 YXN 3.1.3.48 GO:0004725 ... P18031 37086179
    812985 8g6a:A (1.62) BS01 ZD3 3.1.3.48 GO:0004725 ... P18031 37086179
    812986 8g6a:A (1.62) BS02 ZD5 3.1.3.48 GO:0004725 ... P18031 37086179
    812987 8g6c:A (2.82) BS01 MN 3.5.4.16 GO:0003933 ... Q63JF5 39495920
    812988 8g6c:B (2.82) BS01 MN 3.5.4.16 GO:0003933 ... Q63JF5 39495920
    812989 8g6d:B (3.92) BS01 ZN ? GO:0046765 ... P10215 38227586
    812990 8g6d:D (3.92) BS01 ZN ? GO:0046765 ... P10215 38227586
    812991 8g6d:F (3.92) BS01 ZN ? GO:0046765 ... P10215 38227586
    812992 8g6d:H (3.92) BS01 ZN ? GO:0046765 ... P10215 38227586
    812993 8g6d:J (3.92) BS01 ZN ? GO:0046765 ... P10215 38227586
    812994 8g6d:L (3.92) BS01 ZN ? GO:0046765 ... P10215 38227586
    812995 8g6e:C (2.18) BS01 YRE ? GO:0000502 ... W7KN95 38097652
    812996 8g6e:I (2.18) BS01 YRE 3.4.25.1 GO:0004298 ... W7K1J4 38097652
    812997 8g6e:J (2.18) BS01 YRE ? GO:0000502 ... A0A2I0BXS0 38097652
    812998 8g6e:J (2.18) BS02 YRE ? GO:0000502 ... A0A2I0BXS0 38097652
    812999 8g6e:K (2.18) BS01 YRE ? GO:0000502 ... W7JKG5 38097652
    813000 8g6e:L (2.18) BS01 YRE 3.4.25.1 GO:0004298 ... W7K6A8 38097652
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).