SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    813401 8fzj:6 (3.0) BS01 rna N/A GO:0002181 ... P0A7P5 39030416
    813402 8fzj:7 (3.0) BS01 rna N/A GO:0002181 ... P0A7Q1 39030416
    813403 8fzj:8 (3.0) BS01 rna N/A GO:0002181 ... P0A7Q6 39030416
    813404 8fzj:8 (3.0) BS02 ZN N/A GO:0002181 ... P0A7Q6 39030416
    813405 8fzj:C (3.0) BS01 rna N/A GO:0000027 ... P60422 39030416
    813406 8fzj:C (3.0) BS02 rna N/A GO:0000027 ... P60422 39030416
    813407 8fzj:C (3.0) BS03 MG N/A GO:0000027 ... P60422 39030416
    813408 8fzj:C (3.0) BS04 MG N/A GO:0000027 ... P60422 39030416
    813409 8fzj:D (3.0) BS01 rna N/A GO:0000027 ... P60438 39030416
    813410 8fzj:D (3.0) BS02 MG N/A GO:0000027 ... P60438 39030416
    813411 8fzj:D (3.0) BS03 MG N/A GO:0000027 ... P60438 39030416
    813412 8fzj:E (3.0) BS01 rna N/A GO:0001070 ... P60723 39030416
    813413 8fzj:F (3.0) BS01 rna N/A GO:0000027 ... P62399 39030416
    813414 8fzj:F (3.0) BS02 rna N/A GO:0000027 ... P62399 39030416
    813415 8fzj:G (3.0) BS01 rna N/A GO:0000027 ... P0AG55 39030416
    813416 8fzj:I (3.0) BS01 rna N/A GO:0002181 ... P0A7J3 39030416
    813417 8fzj:J (3.0) BS01 rna N/A GO:0000027 ... P0A7J7 39030416
    813418 8fzj:L (3.0) BS01 rna N/A GO:0002181 ... P0AA10 39030416
    813419 8fzj:M (3.0) BS01 rna N/A GO:0002181 ... P0ADY3 39030416
    813420 8fzj:M (3.0) BS02 rna N/A GO:0002181 ... P0ADY3 39030416
    813421 8fzj:N (3.0) BS01 rna N/A GO:0002181 ... P02413 39030416
    813422 8fzj:O (3.0) BS01 rna N/A GO:0000027 ... P0ADY7 39030416
    813423 8fzj:P (3.0) BS01 rna N/A GO:0000027 ... P0AG44 39030416
    813424 8fzj:Q (3.0) BS01 rna N/A GO:0002181 ... P0C018 39030416
    813425 8fzj:Q (3.0) BS02 rna N/A GO:0002181 ... P0C018 39030416
    813426 8fzj:R (3.0) BS01 rna N/A GO:0000027 ... P0A7K6 39030416
    813427 8fzj:S (3.0) BS01 rna N/A GO:0000027 ... P0A7L3 39030416
    813428 8fzj:T (3.0) BS01 rna N/A GO:0002181 ... P0AG48 39030416
    813429 8fzj:U (3.0) BS01 rna N/A GO:0002181 ... P61175 39030416
    813430 8fzj:V (3.0) BS01 rna N/A GO:0000027 ... P0ADZ0 39030416
    813431 8fzj:V (3.0) BS02 MG N/A GO:0000027 ... P0ADZ0 39030416
    813432 8fzj:W (3.0) BS01 rna N/A GO:0000027 ... P60624 39030416
    813433 8fzj:X (3.0) BS01 rna N/A GO:0000027 ... P68919 39030416
    813434 8fzj:Y (3.0) BS01 rna N/A GO:0000027 ... P0A7L8 39030416
    813435 8fzj:Y (3.0) BS02 rna N/A GO:0000027 ... P0A7L8 39030416
    813436 8fzj:Z (3.0) BS01 rna N/A GO:0000027 ... P0A7M2 39030416
    813437 8fzj:b (3.0) BS01 rna N/A GO:0000028 ... P0A7V0 39030416
    813438 8fzj:c (3.0) BS01 rna N/A GO:0000028 ... P0A7V3 39030416
    813439 8fzj:d (3.0) BS01 rna N/A GO:0000028 ... P0A7V8 39030416
    813440 8fzj:e (3.0) BS01 rna N/A GO:0000028 ... P0A7W1 39030416
    813441 8fzj:f (3.0) BS01 rna N/A GO:0002181 ... P02358 39030416
    813442 8fzj:g (3.0) BS01 rna N/A GO:0003723 ... P02359 39030416
    813443 8fzj:h (3.0) BS01 rna N/A GO:0000028 ... P0A7W7 39030416
    813444 8fzj:i (3.0) BS01 rna N/A GO:0002181 ... P0A7X3 39030416
    813445 8fzj:j (3.0) BS01 rna N/A GO:0000049 ... P0A7R5 39030416
    813446 8fzj:k (3.0) BS01 rna N/A GO:0002181 ... P0A7R9 39030416
    813447 8fzj:l (3.0) BS01 rna N/A GO:0000049 ... P0A7S3 39030416
    813448 8fzj:m (3.0) BS01 rna N/A GO:0000049 ... P0A7S9 39030416
    813449 8fzj:n (3.0) BS01 rna N/A GO:0000028 ... P0AG59 39030416
    813450 8fzj:o (3.0) BS01 rna N/A GO:0000028 ... P0ADZ4 39030416
    813451 8fzj:o (3.0) BS02 rna N/A GO:0000028 ... P0ADZ4 39030416
    813452 8fzj:p (3.0) BS01 rna N/A GO:0000028 ... P0A7T3 39030416
    813453 8fzj:q (3.0) BS01 rna N/A GO:0000028 ... P0AG63 39030416
    813454 8fzj:r (3.0) BS01 rna N/A GO:0002181 ... P0A7T7 39030416
    813455 8fzj:s (3.0) BS01 rna N/A GO:0002181 ... P0A7U3 39030416
    813456 8fzj:t (3.0) BS01 rna N/A GO:0000028 ... P0A7U7 39030416
    813457 8fzj:u (3.0) BS01 rna N/A GO:0000028 ... P68679 39030416
    813458 8fzj:v (3.0) BS01 rna N/A GO:0003924 ... P0A7I4 39030416
    813459 8fzj:v (3.0) BS02 rna N/A GO:0003924 ... P0A7I4 39030416
    813460 8fzk:C (2.1) BS01 MG ? GO:0005737 ... P52292 N/A
    813461 8fzm:A (3.0) BS01 peptide ? GO:0005737 ... O00629 N/A
    813462 8fzm:C (3.0) BS01 peptide ? GO:0005737 ... O00629 N/A
    813463 8fzq:A (4.3) BS01 MG 5.6.1.6 GO:0005254 ... P13569 36949202
    813464 8fzq:A (4.3) BS02 MG 5.6.1.6 GO:0005254 ... P13569 36949202
    813465 8fzq:A (4.3) BS03 ATP 5.6.1.6 GO:0005254 ... P13569 36949202
    813466 8fzq:A (4.3) BS04 ATP 5.6.1.6 GO:0005254 ... P13569 36949202
    813467 8fzr:A (3.6) BS01 rna 2.3.2.8 GO:0004057 ... P16639 37076488
    813468 8fzr:A (3.6) BS02 ZN 2.3.2.8 GO:0004057 ... P16639 37076488
    813469 8fzt:E (3.03) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 N/A
    813470 8fzt:E (3.03) BS02 rna 3.1.-.- GO:0003676 ... Q99ZW2 N/A
    813471 8fzt:E (3.03) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 N/A
    813472 8fzv:A (3.29) BS01 MG ? GO:0043565 ... P41212
    P58335
    37747038
    813473 8g00:I (3.4) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 37264140
    813474 8g00:I (3.4) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 37264140
    813475 8g00:I (3.4) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 37264140
    813476 8g00:J (3.4) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    813477 8g00:J (3.4) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    813478 8g00:J (3.4) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    813479 8g00:J (3.4) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    813480 8g04:B (3.4) BS01 MAN ? GO:0001780 ... P40238 37633268
    813481 8g04:B (3.4) BS02 MAN ? GO:0001780 ... P40238 37633268
    813482 8g04:C (3.4) BS01 MAN ? GO:0001780 ... P40238 37633268
    813483 8g05:R (3.0) BS01 YI9 ? GO:0001604 ... Q9NQS5 37709767
    813484 8g05:R (3.0) BS02 CLR ? GO:0001604 ... Q9NQS5 37709767
    813485 8g07:1 (2.8) BS01 SQC ? GO:0005886 ... A0R205 37377118
    813486 8g07:9 (2.8) BS01 SQC ? GO:0005886 ... A0R205 37377118
    813487 8g07:a (2.8) BS01 SQC ? GO:0005886 ... A0R206 37377118
    813488 8g08:A (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813489 8g08:B (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813490 8g08:C (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813491 8g08:D (2.8) BS01 PO4 7.1.2.2 GO:0005524 ... A0R200 37377118
    813492 8g08:F (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0R200 37377118
    813493 8g09:A (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813494 8g09:B (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813495 8g09:C (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813496 8g09:D (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... A0R200 37377118
    813497 8g0a:1 (2.9) BS01 SQC ? GO:0005886 ... A0R205 37377118
    813498 8g0a:2 (2.9) BS01 SQC ? GO:0005886 ... A0R205 37377118
    813499 8g0a:A (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813500 8g0a:A (2.9) BS02 MG 7.1.2.2 GO:0005524 ... A0R202 37377118
    813501 8g0a:B (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813502 8g0a:B (2.9) BS02 MG 7.1.2.2 GO:0005524 ... A0R202 37377118
    813503 8g0a:C (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813504 8g0a:E (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0R200 37377118
    813505 8g0a:E (2.9) BS02 MG 7.1.2.2 GO:0005524 ... A0R200 37377118
    813506 8g0a:F (2.9) BS01 PO4 7.1.2.2 GO:0005524 ... A0R200 37377118
    813507 8g0a:a (2.9) BS01 SQC ? GO:0005886 ... A0R206 37377118
    813508 8g0b:1 (2.8) BS01 YGR ? GO:0005886 ... A0R205 37377118
    813509 8g0b:1 (2.8) BS02 YGR ? GO:0005886 ... A0R205 37377118
    813510 8g0b:2 (2.8) BS01 YGR ? GO:0005886 ... A0R205 37377118
    813511 8g0b:4 (2.8) BS01 YGR ? GO:0005886 ... A0R205 37377118
    813512 8g0b:5 (2.8) BS01 YGR ? GO:0005886 ... A0R205 37377118
    813513 8g0b:5 (2.8) BS02 YGR ? GO:0005886 ... A0R205 37377118
    813514 8g0b:6 (2.8) BS01 YGR ? GO:0005886 ... A0R205 37377118
    813515 8g0b:6 (2.8) BS02 YGR ? GO:0005886 ... A0R205 37377118
    813516 8g0b:7 (2.8) BS01 YGR ? GO:0005886 ... A0R205 37377118
    813517 8g0b:7 (2.8) BS02 YGR ? GO:0005886 ... A0R205 37377118
    813518 8g0b:8 (2.8) BS01 YGR ? GO:0005886 ... A0R205 37377118
    813519 8g0b:8 (2.8) BS02 YGR ? GO:0005886 ... A0R205 37377118
    813520 8g0b:9 (2.8) BS01 YGR ? GO:0005886 ... A0R205 37377118
    813521 8g0b:9 (2.8) BS02 YGR ? GO:0005886 ... A0R205 37377118
    813522 8g0b:a (2.8) BS01 YGR ? GO:0005886 ... A0R206 37377118
    813523 8g0b:a (2.8) BS02 YGR ? GO:0005886 ... A0R206 37377118
    813524 8g0c:A (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813525 8g0c:B (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813526 8g0c:C (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813527 8g0c:F (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0R200 37377118
    813528 8g0d:A (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813529 8g0d:B (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813530 8g0d:C (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813531 8g0d:D (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0R200 37377118
    813532 8g0d:E (2.9) BS01 PO4 7.1.2.2 GO:0005524 ... A0R200 37377118
    813533 8g0e:1 (2.6) BS01 YGR ? GO:0005886 ... A0R205 37377118
    813534 8g0e:3 (2.6) BS01 YGR ? GO:0005886 ... A0R205 37377118
    813535 8g0e:4 (2.6) BS01 YGR ? GO:0005886 ... A0R205 37377118
    813536 8g0e:4 (2.6) BS02 YGR ? GO:0005886 ... A0R205 37377118
    813537 8g0e:5 (2.6) BS01 YGR ? GO:0005886 ... A0R205 37377118
    813538 8g0e:5 (2.6) BS02 YGR ? GO:0005886 ... A0R205 37377118
    813539 8g0e:6 (2.6) BS01 YGR ? GO:0005886 ... A0R205 37377118
    813540 8g0e:6 (2.6) BS02 YGR ? GO:0005886 ... A0R205 37377118
    813541 8g0e:7 (2.6) BS01 YGR ? GO:0005886 ... A0R205 37377118
    813542 8g0e:7 (2.6) BS02 YGR ? GO:0005886 ... A0R205 37377118
    813543 8g0e:8 (2.6) BS01 YGR ? GO:0005886 ... A0R205 37377118
    813544 8g0e:8 (2.6) BS02 YGR ? GO:0005886 ... A0R205 37377118
    813545 8g0e:9 (2.6) BS01 YGR ? GO:0005886 ... A0R205 37377118
    813546 8g0e:9 (2.6) BS02 YGR ? GO:0005886 ... A0R205 37377118
    813547 8g0e:A (2.6) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813548 8g0e:B (2.6) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813549 8g0e:B (2.6) BS02 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813550 8g0e:C (2.6) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 37377118
    813551 8g0e:E (2.6) BS01 ATP 7.1.2.2 GO:0005524 ... A0R200 37377118
    813552 8g0e:E (2.6) BS02 MG 7.1.2.2 GO:0005524 ... A0R200 37377118
    813553 8g0e:F (2.6) BS01 PO4 7.1.2.2 GO:0005524 ... A0R200 37377118
    813554 8g0e:a (2.6) BS01 YGR ? GO:0005886 ... A0R206 37377118
    813555 8g0e:a (2.6) BS02 YGR ? GO:0005886 ... A0R206 37377118
    813556 8g0g:A (2.1) BS01 APU ? GO:0005615 ... Q5PY51 37505680
    813557 8g0g:B (2.1) BS01 APU ? GO:0005615 ... Q5PY51 37505680
    813558 8g0h:A (3.8) BS01 dna 2.4.2.-
    2.4.2.30
    GO:0003677 ... P09874 38372302
    813559 8g0h:A (3.8) BS02 dna 2.4.2.-
    2.4.2.30
    GO:0003677 ... P09874 38372302
    813560 8g0h:A (3.8) BS03 ZN 2.4.2.-
    2.4.2.30
    GO:0003677 ... P09874 38372302
    813561 8g0h:A (3.8) BS04 ZN 2.4.2.-
    2.4.2.30
    GO:0003677 ... P09874 38372302
    813562 8g0h:B (3.8) BS01 dna 2.4.2.-
    2.4.2.30
    GO:0003950 ... P09874 38372302
    813563 8g0h:B (3.8) BS02 YH0 2.4.2.-
    2.4.2.30
    GO:0003950 ... P09874 38372302
    813564 8g0h:C (3.8) BS01 dna 2.4.2.-
    2.4.2.30
    GO:0003677 ... P09874 38372302
    813565 8g0h:C (3.8) BS02 ZN 2.4.2.-
    2.4.2.30
    GO:0003677 ... P09874 38372302
    813566 8g0h:C (3.8) BS03 ZN 2.4.2.-
    2.4.2.30
    GO:0003677 ... P09874 38372302
    813567 8g0h:D (3.8) BS01 dna 2.4.2.-
    2.4.2.30
    GO:0003950 ... P09874 38372302
    813568 8g0h:D (3.8) BS02 YH0 2.4.2.-
    2.4.2.30
    GO:0003950 ... P09874 38372302
    813569 8g0l:A (3.39) BS01 peptide 2.3.1.254 GO:0004596 ... P61599 37319422
    813570 8g0l:A (3.39) BS02 CMC 2.3.1.254 GO:0004596 ... P61599 37319422
    813571 8g0m:B (2.25) BS01 BMA N/A N/A N/A 37598178
    813572 8g0m:B (2.25) BS02 GAL N/A N/A N/A 37598178
    813573 8g0r:A (2.6) BS01 YHF 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    813574 8g0r:B (2.6) BS01 YHF 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    813575 8g0r:C (2.6) BS01 YHF 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    813576 8g0s:A (2.9) BS01 YHF 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    813577 8g0s:B (2.9) BS01 YHF 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    813578 8g0s:C (2.9) BS01 YHF 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    813579 8g0t:A (2.45) BS01 YHK 6.2.1.1 GO:0003987 ... J9VFT1 41087359
    813580 8g0t:B (2.45) BS01 YHK 6.2.1.1 GO:0003987 ... J9VFT1 41087359
    813581 8g0t:C (2.45) BS01 YHK 6.2.1.1 GO:0003987 ... J9VFT1 41087359
    813582 8g0u:A (1.9) BS01 YHQ 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    813583 8g0u:B (1.9) BS01 YHQ 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    813584 8g0u:C (1.9) BS01 YHQ 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    813585 8g0v:A (1.9) BS01 YHT 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    813586 8g0v:B (1.9) BS01 YHT 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    813587 8g0v:C (1.9) BS01 YHT 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    813588 8g0z:A (3.61) BS01 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    813589 8g0z:B (3.61) BS01 dna 3.6.4.- GO:0000166 ... P04530 37474605
    813590 8g0z:B (3.61) BS02 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    813591 8g0z:B (3.61) BS03 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    813592 8g0z:C (3.61) BS01 dna 3.6.4.- GO:0000166 ... P04530 37474605
    813593 8g0z:C (3.61) BS02 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    813594 8g0z:C (3.61) BS03 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    813595 8g0z:D (3.61) BS01 dna 3.6.4.- GO:0000166 ... P04530 37474605
    813596 8g0z:D (3.61) BS02 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    813597 8g0z:D (3.61) BS03 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    813598 8g0z:E (3.61) BS01 dna 3.6.4.- GO:0000166 ... P04530 37474605
    813599 8g0z:E (3.61) BS02 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    813600 8g0z:E (3.61) BS03 AGS 3.6.4.- GO:0000166 ... P04530 37474605

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).