SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    813601 8g0z:F (3.61) BS01 dna 3.6.4.- GO:0000166 ... P04530 37474605
    813602 8g0z:F (3.61) BS02 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    813603 8g10:A (2.47) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    813604 8g10:A (2.47) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    813605 8g10:A (2.47) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    813606 8g10:A (2.47) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    813607 8g10:A (2.47) BS05 GTP 2.7.7.86 N/A Q8C6L5 38740774
    813608 8g10:A (2.47) BS06 GTP 2.7.7.86 N/A Q8C6L5 38740774
    813609 8g10:A (2.47) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    813610 8g10:A (2.47) BS08 ZN 2.7.7.86 N/A Q8C6L5 38740774
    813611 8g10:C (2.47) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    813612 8g10:C (2.47) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    813613 8g10:C (2.47) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    813614 8g10:C (2.47) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    813615 8g10:C (2.47) BS05 GTP 2.7.7.86 N/A Q8C6L5 38740774
    813616 8g10:C (2.47) BS06 GTP 2.7.7.86 N/A Q8C6L5 38740774
    813617 8g10:C (2.47) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    813618 8g10:C (2.47) BS08 ZN 2.7.7.86 N/A Q8C6L5 38740774
    813619 8g18:A (2.85) BS01 YGW ? GO:0004930 ... A0A8J0TPH2 36779874
    813620 8g18:B (2.85) BS01 YGW ? N/A Q00960 36779874
    813621 8g18:C (2.85) BS01 YGW ? GO:0004930 ... A0A8J0TPH2 36779874
    813622 8g18:D (2.85) BS01 YGW ? N/A Q00960 36779874
    813623 8g1a:A (2.8) BS01 P0T ? GO:0001508 ... Q15858 37330538
    813624 8g1a:A (2.8) BS02 P0T ? GO:0001508 ... Q15858 37330538
    813625 8g1a:A (2.8) BS03 P5S ? GO:0001508 ... Q15858 37330538
    813626 8g1a:A (2.8) BS04 Y01 ? GO:0001508 ... Q15858 37330538
    813627 8g1a:A (2.8) BS05 Y01 ? GO:0001508 ... Q15858 37330538
    813628 8g1a:A (2.8) BS06 9Z9 ? GO:0001508 ... Q15858 37330538
    813629 8g1a:A (2.8) BS07 Y01 ? GO:0001508 ... Q15858 37330538
    813630 8g1a:A (2.8) BS08 LPE ? GO:0001508 ... Q15858 37330538
    813631 8g1a:A (2.8) BS09 LPE ? GO:0001508 ... Q15858 37330538
    813632 8g1a:A (2.8) BS10 LPE ? GO:0001508 ... Q15858 37330538
    813633 8g1a:A (2.8) BS11 P5S ? GO:0001508 ... Q15858 37330538
    813634 8g1a:A (2.8) BS12 LPE ? GO:0001508 ... Q15858 37330538
    813635 8g1a:A (2.8) BS13 LPE ? GO:0001508 ... Q15858 37330538
    813636 8g1a:A (2.8) BS14 LPE ? GO:0001508 ... Q15858 37330538
    813637 8g1a:A (2.8) BS15 LPE ? GO:0001508 ... Q15858 37330538
    813638 8g1a:A (2.8) BS16 LPE ? GO:0001508 ... Q15858 37330538
    813639 8g1a:B (2.8) BS01 LPE ? GO:0001518 ... Q07699 37330538
    813640 8g1e:A (2.8) BS01 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    813641 8g1e:A (2.8) BS02 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    813642 8g1e:A (2.8) BS03 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    813643 8g1e:A (2.8) BS04 Q5B 2.3.3.8 GO:0003824 ... P53396 37076498
    813644 8g1e:B (2.8) BS01 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    813645 8g1e:B (2.8) BS02 Q5B 2.3.3.8 GO:0003824 ... P53396 37076498
    813646 8g1e:B (2.8) BS03 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    813647 8g1e:B (2.8) BS04 Q5B 2.3.3.8 GO:0003824 ... P53396 37076498
    813648 8g1e:C (2.8) BS01 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    813649 8g1e:C (2.8) BS02 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    813650 8g1e:C (2.8) BS03 ADP 2.3.3.8 GO:0003824 ... P53396 37076498
    813651 8g1e:C (2.8) BS04 Q5B 2.3.3.8 GO:0003824 ... P53396 37076498
    813652 8g1e:C (2.8) BS05 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    813653 8g1e:D (2.8) BS01 Q5B 2.3.3.8 GO:0003824 ... P53396 37076498
    813654 8g1e:D (2.8) BS02 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    813655 8g1e:D (2.8) BS03 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    813656 8g1e:D (2.8) BS04 Q5B 2.3.3.8 GO:0003824 ... P53396 37076498
    813657 8g1e:D (2.8) BS05 ADP 2.3.3.8 GO:0003824 ... P53396 37076498
    813658 8g1f:A (2.4) BS01 ADP 2.3.3.8 GO:0003824 ... P53396 37076498
    813659 8g1f:A (2.4) BS02 Q5B 2.3.3.8 GO:0003824 ... P53396 37076498
    813660 8g1f:A (2.4) BS03 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    813661 8g1f:A (2.4) BS04 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    813662 8g1f:A (2.4) BS05 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    813663 8g1f:A (2.4) BS06 Q5B 2.3.3.8 GO:0003824 ... P53396 37076498
    813664 8g1f:B (2.4) BS01 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    813665 8g1f:B (2.4) BS02 Q5B 2.3.3.8 GO:0003824 ... P53396 37076498
    813666 8g1f:B (2.4) BS03 ADP 2.3.3.8 GO:0003824 ... P53396 37076498
    813667 8g1f:B (2.4) BS04 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    813668 8g1f:B (2.4) BS05 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    813669 8g1f:B (2.4) BS06 Q5B 2.3.3.8 GO:0003824 ... P53396 37076498
    813670 8g1f:C (2.4) BS01 Q5B 2.3.3.8 GO:0003824 ... P53396 37076498
    813671 8g1f:C (2.4) BS02 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    813672 8g1f:C (2.4) BS03 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    813673 8g1f:C (2.4) BS04 ADP 2.3.3.8 GO:0003824 ... P53396 37076498
    813674 8g1f:C (2.4) BS05 Q5B 2.3.3.8 GO:0003824 ... P53396 37076498
    813675 8g1f:C (2.4) BS06 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    813676 8g1f:D (2.4) BS01 Q5B 2.3.3.8 GO:0003824 ... P53396 37076498
    813677 8g1f:D (2.4) BS02 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    813678 8g1f:D (2.4) BS03 ACO 2.3.3.8 GO:0003824 ... P53396 37076498
    813679 8g1f:D (2.4) BS04 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    813680 8g1f:D (2.4) BS05 Q5B 2.3.3.8 GO:0003824 ... P53396 37076498
    813681 8g1f:D (2.4) BS06 ADP 2.3.3.8 GO:0003824 ... P53396 37076498
    813682 8g1i:A (3.12) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 N/A
    813683 8g1i:A (3.12) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 N/A
    813684 8g1j:A (2.3) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    813685 8g1j:A (2.3) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    813686 8g1j:A (2.3) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    813687 8g1j:A (2.3) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    813688 8g1j:A (2.3) BS05 ATP 2.7.7.86 N/A Q8C6L5 38740774
    813689 8g1j:A (2.3) BS06 GTP 2.7.7.86 N/A Q8C6L5 38740774
    813690 8g1j:A (2.3) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    813691 8g1j:A (2.3) BS08 ZN 2.7.7.86 N/A Q8C6L5 38740774
    813692 8g1j:C (2.3) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    813693 8g1j:C (2.3) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    813694 8g1j:C (2.3) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    813695 8g1j:C (2.3) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    813696 8g1j:C (2.3) BS05 GTP 2.7.7.86 N/A Q8C6L5 38740774
    813697 8g1j:C (2.3) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    813698 8g1j:C (2.3) BS07 ZN 2.7.7.86 N/A Q8C6L5 38740774
    813699 8g1l:A (1.06) BS01 CA ? N/A Q5HKE8 N/A
    813700 8g1l:A (1.06) BS02 MG ? N/A Q5HKE8 N/A
    813701 8g1l:A (1.06) BS03 MG ? N/A Q5HKE8 N/A
    813702 8g1l:A (1.06) BS04 MG ? N/A Q5HKE8 N/A
    813703 8g1m:A (1.93) BS01 CA ? N/A Q2G2B2 N/A
    813704 8g1n:A (2.74) BS01 MG 2.7.8.36 GO:0016780 ... A7ZET4 37096962
    813705 8g1n:B (2.74) BS01 MG 2.7.8.36 GO:0016780 ... A7ZET4 37096962
    813706 8g1p:C (2.7) BS01 FWZ ? N/A P40337 37443112
    813707 8g1p:F (2.7) BS01 FWZ ? N/A P40337 37443112
    813708 8g1p:G (2.7) BS01 FWZ 3.6.4.- GO:0006338 ... P51531 37443112
    813709 8g1p:H (2.7) BS01 FWZ 3.6.4.- GO:0006338 ... P51531 37443112
    813710 8g1q:C (3.73) BS01 YHB ? N/A P40337 37443112
    813711 8g1q:H (3.73) BS01 YHB 3.6.4.- GO:0006338 ... P51532 37443112
    813712 8g1s:I (3.7) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 37264140
    813713 8g1s:I (3.7) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 37264140
    813714 8g1s:I (3.7) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 37264140
    813715 8g1s:J (3.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    813716 8g1s:J (3.7) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    813717 8g1s:J (3.7) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    813718 8g1s:J (3.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    813719 8g1u:A (2.83) BS01 peptide 2.1.1.320 GO:0000387 ... O14744 37562960
    813720 8g1u:A (2.83) BS02 peptide 2.1.1.320 GO:0000387 ... O14744 37562960
    813721 8g1u:A (2.83) BS03 ADN 2.1.1.320 GO:0000387 ... O14744 37562960
    813722 8g1u:E (2.83) BS01 peptide 2.1.1.320 GO:0000387 ... O14744 37562960
    813723 8g1u:E (2.83) BS02 peptide 2.1.1.320 GO:0000387 ... O14744 37562960
    813724 8g1u:E (2.83) BS03 ADN 2.1.1.320 GO:0000387 ... O14744 37562960
    813725 8g1u:I (2.83) BS01 peptide 2.1.1.320 GO:0000387 ... O14744 37562960
    813726 8g1u:I (2.83) BS02 peptide 2.1.1.320 GO:0000387 ... O14744 37562960
    813727 8g1u:I (2.83) BS03 ADN 2.1.1.320 GO:0000387 ... O14744 37562960
    813728 8g1u:M (2.83) BS01 peptide 2.1.1.320 GO:0000387 ... O14744 37562960
    813729 8g1u:M (2.83) BS02 peptide 2.1.1.320 GO:0000387 ... O14744 37562960
    813730 8g1u:M (2.83) BS03 ADN 2.1.1.320 GO:0000387 ... O14744 37562960
    813731 8g1v:A (1.35) BS01 YIL N/A GO:0004252 ... Q9Y5Y6 39073183
    813732 8g1w:A (1.2) BS01 peptide 3.4.21.109 GO:0004252 ... Q9Y5Y6 38477709
    813733 8g1w:A (1.2) BS02 peptide 3.4.21.109 GO:0004252 ... Q9Y5Y6 38477709
    813734 8g1y:A (1.43) BS01 PLP 4.2.3.1 GO:0004795 ... A0A0H2US33 N/A
    813735 8g1y:B (1.43) BS01 PLP 4.2.3.1 GO:0004795 ... A0A0H2US33 N/A
    813736 8g1z:A (1.87) BS01 YIZ ? N/A F8W4B7 37902787
    813737 8g1z:A (1.87) BS02 ZN ? N/A F8W4B7 37902787
    813738 8g20:A (1.766) BS01 YJ5 ? N/A F8W4B7 37902787
    813739 8g20:A (1.766) BS02 ZN ? N/A F8W4B7 37902787
    813740 8g20:B (1.766) BS01 YJ5 ? N/A F8W4B7 37902787
    813741 8g20:B (1.766) BS02 YJ5 ? N/A F8W4B7 37902787
    813742 8g20:B (1.766) BS03 ZN ? N/A F8W4B7 37902787
    813743 8g23:A (2.71) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    813744 8g23:A (2.71) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    813745 8g23:A (2.71) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    813746 8g23:A (2.71) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    813747 8g23:A (2.71) BS05 ATP 2.7.7.86 N/A Q8C6L5 38740774
    813748 8g23:A (2.71) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    813749 8g23:A (2.71) BS07 ZN 2.7.7.86 N/A Q8C6L5 38740774
    813750 8g23:C (2.71) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    813751 8g23:C (2.71) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    813752 8g23:C (2.71) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    813753 8g23:C (2.71) BS04 VWX 2.7.7.86 N/A Q8C6L5 38740774
    813754 8g23:C (2.71) BS05 MG 2.7.7.86 N/A Q8C6L5 38740774
    813755 8g23:C (2.71) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    813756 8g27:C (3.3) BS01 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    813757 8g27:C (3.3) BS02 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    813758 8g27:C (3.3) BS03 UDP 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    813759 8g27:D (3.3) BS01 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    813760 8g27:D (3.3) BS02 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    813761 8g27:D (3.3) BS03 UDP 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    813762 8g27:I (3.3) BS01 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    813763 8g27:I (3.3) BS02 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    813764 8g27:I (3.3) BS03 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    813765 8g27:I (3.3) BS04 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    813766 8g27:I (3.3) BS05 UDP 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    813767 8g29:10 (2.55) BS01 rna ? GO:0003735 ... P60493 38238495
    813768 8g29:10 (2.55) BS02 rna ? GO:0003735 ... P60493 38238495
    813769 8g29:10 (2.55) BS03 rna ? GO:0003735 ... P60493 38238495
    813770 8g29:10 (2.55) BS04 MG ? GO:0003735 ... P60493 38238495
    813771 8g29:10 (2.55) BS05 MG ? GO:0003735 ... P60493 38238495
    813772 8g29:11 (2.55) BS01 rna ? GO:0003735 ... P60494 38238495
    813773 8g29:11 (2.55) BS02 rna ? GO:0003735 ... P60494 38238495
    813774 8g29:11 (2.55) BS03 MG ? GO:0003735 ... P60494 38238495
    813775 8g29:12 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 38238495
    813776 8g29:12 (2.55) BS02 MG ? GO:0003735 ... Q5SHP6 38238495
    813777 8g29:12 (2.55) BS03 MG ? GO:0003735 ... Q5SHP6 38238495
    813778 8g29:13 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 38238495
    813779 8g29:13 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 38238495
    813780 8g29:13 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 38238495
    813781 8g29:13 (2.55) BS04 MG ? GO:0003735 ... Q5SHQ6 38238495
    813782 8g29:14 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 38238495
    813783 8g29:14 (2.55) BS02 MG ? GO:0003735 ... Q5SJE1 38238495
    813784 8g29:14 (2.55) BS03 ZN ? GO:0003735 ... Q5SJE1 38238495
    813785 8g29:15 (2.55) BS01 rna ? GO:0003735 ... P80339 38238495
    813786 8g29:15 (2.55) BS02 MG ? GO:0003735 ... P80339 38238495
    813787 8g29:15 (2.55) BS03 ZN ? GO:0003735 ... P80339 38238495
    813788 8g29:16 (2.55) BS01 rna ? GO:0003735 ... P35871 38238495
    813789 8g29:16 (2.55) BS02 MG ? GO:0003735 ... P35871 38238495
    813790 8g29:16 (2.55) BS03 ZN ? GO:0003735 ... P35871 38238495
    813791 8g29:17 (2.55) BS01 rna ? GO:0003735 ... P80340 38238495
    813792 8g29:17 (2.55) BS02 MG ? GO:0003735 ... P80340 38238495
    813793 8g29:17 (2.55) BS03 MG ? GO:0003735 ... P80340 38238495
    813794 8g29:17 (2.55) BS04 MG ? GO:0003735 ... P80340 38238495
    813795 8g29:18 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 38238495
    813796 8g29:18 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 38238495
    813797 8g29:18 (2.55) BS03 MG ? GO:0003735 ... Q5SKU1 38238495
    813798 8g29:18 (2.55) BS04 MG ? GO:0003735 ... Q5SKU1 38238495
    813799 8g29:19 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 38238495
    813800 8g29:19 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 38238495

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).