SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    814001 8g9s:M (3.4) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814002 8g9s:N (3.4) BS01 rna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    814003 8g9t:A (3.6) BS01 rna ? N/A I3UM23 38242128
    814004 8g9t:B (3.6) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814005 8g9t:C (3.6) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814006 8g9t:D (3.6) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814007 8g9t:E (3.6) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814008 8g9t:F (3.6) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814009 8g9t:H (3.6) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814010 8g9t:K (3.6) BS01 rna ? N/A D0W8X5 38242128
    814011 8g9t:M (3.6) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814012 8g9t:N (3.6) BS01 rna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    814013 8g9u:A (3.0) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814014 8g9u:A (3.0) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    814015 8g9u:B (3.0) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814016 8g9u:B (3.0) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    814017 8g9u:C (3.0) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814018 8g9u:C (3.0) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    814019 8g9u:D (3.0) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814020 8g9u:D (3.0) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    814021 8g9u:E (3.0) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814022 8g9u:E (3.0) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    814023 8g9u:F (3.0) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814024 8g9u:F (3.0) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    814025 8g9u:G (3.0) BS01 dna ? N/A D0W8X5 38242128
    814026 8g9u:G (3.0) BS02 dna ? N/A D0W8X5 38242128
    814027 8g9u:H (3.0) BS01 rna ? N/A D0W8X5 38242128
    814028 8g9u:H (3.0) BS02 dna ? N/A D0W8X5 38242128
    814029 8g9u:H (3.0) BS03 dna ? N/A D0W8X5 38242128
    814030 8g9u:H (3.0) BS04 dna ? N/A D0W8X5 38242128
    814031 8g9u:I (3.0) BS01 dna ? N/A D0W8X5 38242128
    814032 8g9u:I (3.0) BS02 dna ? N/A D0W8X5 38242128
    814033 8g9u:J (3.0) BS01 dna ? N/A D0W8X5 38242128
    814034 8g9u:J (3.0) BS02 dna ? N/A D0W8X5 38242128
    814035 8g9u:M (3.0) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814036 8g9u:M (3.0) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    814037 8g9u:N (3.0) BS01 rna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    814038 8g9u:N (3.0) BS02 dna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    814039 8g9u:N (3.0) BS03 dna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    814040 8g9u:P (3.0) BS01 dna 3.1.-.- GO:0003676 ... D0W8X3 38242128
    814041 8g9u:P (3.0) BS02 MG 3.1.-.- GO:0003676 ... D0W8X3 38242128
    814042 8g9u:P (3.0) BS03 MG 3.1.-.- GO:0003676 ... D0W8X3 38242128
    814043 8g9v:A (2.645) BS01 NAD 1.1.1.-
    1.1.1.105
    1.1.1.62
    N/A Q7Z5P4 37620305
    814044 8g9v:A (2.645) BS02 YYC 1.1.1.-
    1.1.1.105
    1.1.1.62
    N/A Q7Z5P4 37620305
    814045 8g9v:B (2.645) BS01 NAD 1.1.1.-
    1.1.1.105
    1.1.1.62
    N/A Q7Z5P4 37620305
    814046 8g9v:B (2.645) BS02 YYC 1.1.1.-
    1.1.1.105
    1.1.1.62
    N/A Q7Z5P4 37620305
    814047 8g9v:C (2.645) BS01 NAD 1.1.1.-
    1.1.1.105
    1.1.1.62
    N/A Q7Z5P4 37620305
    814048 8g9v:C (2.645) BS02 YYC 1.1.1.-
    1.1.1.105
    1.1.1.62
    N/A Q7Z5P4 37620305
    814049 8g9v:D (2.645) BS01 NAD 1.1.1.-
    1.1.1.105
    1.1.1.62
    N/A Q7Z5P4 37620305
    814050 8g9v:D (2.645) BS02 YYC 1.1.1.-
    1.1.1.105
    1.1.1.62
    N/A Q7Z5P4 37620305
    814051 8g9v:E (2.645) BS01 NAD 1.1.1.-
    1.1.1.105
    1.1.1.62
    N/A Q7Z5P4 37620305
    814052 8g9v:E (2.645) BS02 YYC 1.1.1.-
    1.1.1.105
    1.1.1.62
    N/A Q7Z5P4 37620305
    814053 8g9v:F (2.645) BS01 NAD 1.1.1.-
    1.1.1.105
    1.1.1.62
    N/A Q7Z5P4 37620305
    814054 8g9v:F (2.645) BS02 YYC 1.1.1.-
    1.1.1.105
    1.1.1.62
    N/A Q7Z5P4 37620305
    814055 8g9v:G (2.645) BS01 NAD 1.1.1.-
    1.1.1.105
    1.1.1.62
    N/A Q7Z5P4 37620305
    814056 8g9v:G (2.645) BS02 YYC 1.1.1.-
    1.1.1.105
    1.1.1.62
    N/A Q7Z5P4 37620305
    814057 8g9v:H (2.645) BS01 NAD 1.1.1.-
    1.1.1.105
    1.1.1.62
    N/A Q7Z5P4 37620305
    814058 8g9v:H (2.645) BS02 YYC 1.1.1.-
    1.1.1.105
    1.1.1.62
    N/A Q7Z5P4 37620305
    814059 8g9z:A (2.07) BS01 rna 2.9.1.2 GO:0000049 ... Q9HD40 36929010
    814060 8g9z:A (2.07) BS02 PLR 2.9.1.2 GO:0000049 ... Q9HD40 36929010
    814061 8g9z:B (2.07) BS01 rna 2.9.1.2 GO:0000049 ... Q9HD40 36929010
    814062 8g9z:B (2.07) BS02 PLR 2.9.1.2 GO:0000049 ... Q9HD40 36929010
    814063 8g9z:C (2.07) BS01 rna 2.9.1.2 GO:0000049 ... Q9HD40 36929010
    814064 8g9z:C (2.07) BS02 PLR 2.9.1.2 GO:0000049 ... Q9HD40 36929010
    814065 8g9z:D (2.07) BS01 rna 2.9.1.2 GO:0000049 ... Q9HD40 36929010
    814066 8g9z:D (2.07) BS02 PLR 2.9.1.2 GO:0000049 ... Q9HD40 36929010
    814067 8ga1:A (2.6) BS01 CL ? GO:0005247 ... P37019 38279055
    814068 8ga1:B (2.6) BS01 CL ? GO:0005247 ... P37019 38279055
    814069 8ga1:B (2.6) BS02 CL ? GO:0005247 ... P37019 38279055
    814070 8ga2:A (1.85) BS01 YVK 2.3.1.-
    2.3.1.48
    N/A Q92793 38664416
    814071 8ga2:B (1.85) BS01 YVK 2.3.1.-
    2.3.1.48
    N/A Q92793 38664416
    814072 8ga2:C (1.85) BS01 YVK 2.3.1.-
    2.3.1.48
    N/A Q92793 38664416
    814073 8ga2:D (1.85) BS01 YVK 2.3.1.-
    2.3.1.48
    N/A Q92793 38664416
    814074 8ga3:A (3.1) BS01 CL ? GO:0005247 ... P37019 38279055
    814075 8ga5:A (2.6) BS01 CL ? GO:0005247 ... P37019 38279055
    814076 8ga5:A (2.6) BS02 CL ? GO:0005247 ... P37019 38279055
    814077 8ga5:B (2.6) BS01 CL ? GO:0005247 ... P37019 38279055
    814078 8ga5:B (2.6) BS02 CL ? GO:0005247 ... P37019 38279055
    814079 8ga8:B (3.5) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 37244892
    814080 8ga8:E (3.5) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 37244892
    814081 8gad:A (1.88) BS01 IND N/A N/A N/A 38746206
    814082 8gad:B (1.88) BS01 IND N/A N/A N/A 38746206
    814083 8gae:A (3.3) BS01 ADP ? GO:0001890 ... P08238 37069154
    814084 8gae:B (3.3) BS01 ATP ? GO:0001890 ... P08238 37069154
    814085 8gae:E (3.3) BS01 MN 3.1.3.16 GO:0000165 ... P53041 37069154
    814086 8gae:E (3.3) BS02 MN 3.1.3.16 GO:0000165 ... P53041 37069154
    814087 8gaf:A (3.64) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814088 8gaf:B (3.64) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814089 8gaf:C (3.64) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814090 8gaf:D (3.64) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814091 8gaf:E (3.64) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814092 8gaf:F (3.64) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814093 8gaf:G (3.64) BS01 rna ? N/A D0W8X5 38242128
    814094 8gaf:M (3.64) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814095 8gaf:N (3.64) BS01 rna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    814096 8gag:R (3.3) BS01 YVF ? GO:0004930 ... P21554 N/A
    814097 8gah:A (2.9) BS01 CL ? GO:0005247 ... P37019 38279055
    814098 8gah:A (2.9) BS02 CL ? GO:0005247 ... P37019 38279055
    814099 8gah:B (2.9) BS01 CL ? GO:0005247 ... P37019 38279055
    814100 8gai:A (2.65) BS01 peptide ? GO:0005737 ... H0VVB1 N/A
    814101 8gai:C (2.65) BS01 peptide ? GO:0005737 ... H0VVB1 N/A
    814102 8gaj:A (2.43) BS01 peptide ? GO:0001530 ... P0ADV1 37416832
    814103 8gaj:C (2.43) BS01 peptide ? GO:0001530 ... P0ADV1 37416832
    814104 8gak:A (1.9) BS01 peptide ? GO:0001530 ... P0ADV1 37416832
    814105 8gak:C (1.9) BS01 peptide ? GO:0001530 ... P0ADV1 37416832
    814106 8gal:A (1.8) BS01 peptide ? GO:0001530 ... P0ADV1 37416832
    814107 8gal:C (1.8) BS01 peptide ? GO:0001530 ... P0ADV1 37416832
    814108 8gam:A (3.46) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814109 8gam:B (3.46) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814110 8gam:B (3.46) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    814111 8gam:C (3.46) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814112 8gam:D (3.46) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814113 8gam:E (3.46) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814114 8gam:F (3.46) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814115 8gam:G (3.46) BS01 rna ? N/A D0W8X5 38242128
    814116 8gam:G (3.46) BS02 dna ? N/A D0W8X5 38242128
    814117 8gam:G (3.46) BS03 dna ? N/A D0W8X5 38242128
    814118 8gam:H (3.46) BS01 dna ? N/A D0W8X5 38242128
    814119 8gam:M (3.46) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814120 8gam:M (3.46) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    814121 8gam:N (3.46) BS01 rna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    814122 8gam:N (3.46) BS02 dna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    814123 8gam:N (3.46) BS03 dna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    814124 8gan:A (3.26) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814125 8gan:A (3.26) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    814126 8gan:B (3.26) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814127 8gan:B (3.26) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    814128 8gan:C (3.26) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814129 8gan:C (3.26) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    814130 8gan:D (3.26) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814131 8gan:D (3.26) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    814132 8gan:E (3.26) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814133 8gan:E (3.26) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    814134 8gan:F (3.26) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814135 8gan:F (3.26) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    814136 8gan:G (3.26) BS01 dna ? N/A D0W8X5 38242128
    814137 8gan:G (3.26) BS02 dna ? N/A D0W8X5 38242128
    814138 8gan:H (3.26) BS01 rna ? N/A D0W8X5 38242128
    814139 8gan:H (3.26) BS02 dna ? N/A D0W8X5 38242128
    814140 8gan:H (3.26) BS03 dna ? N/A D0W8X5 38242128
    814141 8gan:H (3.26) BS04 dna ? N/A D0W8X5 38242128
    814142 8gan:I (3.26) BS01 dna ? N/A D0W8X5 38242128
    814143 8gan:I (3.26) BS02 dna ? N/A D0W8X5 38242128
    814144 8gan:J (3.26) BS01 dna ? N/A D0W8X5 38242128
    814145 8gan:J (3.26) BS02 dna ? N/A D0W8X5 38242128
    814146 8gan:M (3.26) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    814147 8gan:M (3.26) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    814148 8gan:N (3.26) BS01 rna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    814149 8gan:N (3.26) BS02 dna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    814150 8gan:N (3.26) BS03 dna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    814151 8gao:A (4.1) BS01 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    814152 8gao:B (4.1) BS01 dna 3.6.4.- GO:0003677 ... P04530 37474605
    814153 8gao:B (4.1) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    814154 8gao:B (4.1) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    814155 8gao:C (4.1) BS01 dna 3.6.4.- GO:0003677 ... P04530 37474605
    814156 8gao:C (4.1) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    814157 8gao:C (4.1) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    814158 8gao:D (4.1) BS01 dna 3.6.4.- GO:0003677 ... P04530 37474605
    814159 8gao:D (4.1) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    814160 8gao:D (4.1) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    814161 8gao:E (4.1) BS01 dna 3.6.4.- GO:0003677 ... P04530 37474605
    814162 8gao:E (4.1) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    814163 8gao:E (4.1) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    814164 8gao:F (4.1) BS01 dna 3.6.4.- GO:0003677 ... P04530 37474605
    814165 8gao:F (4.1) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    814166 8gao:F (4.1) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    814167 8gao:G (4.1) BS01 rna 2.7.7.- GO:0003896 ... P04520 37474605
    814168 8gao:G (4.1) BS02 dna 2.7.7.- GO:0003896 ... P04520 37474605
    814169 8gao:G (4.1) BS03 ZN 2.7.7.- GO:0003896 ... P04520 37474605
    814170 8gap:A (3.8) BS01 dna 2.7.7.49 GO:0000333 ... O77448 37330293
    814171 8gap:A (3.8) BS02 rna 2.7.7.49 GO:0000333 ... O77448 37330293
    814172 8gap:D (3.8) BS01 dna ? GO:0000781 ... D2CVN6 37330293
    814173 8gap:D (3.8) BS02 ZN ? GO:0000781 ... D2CVN6 37330293
    814174 8gap:H (3.8) BS01 rna ? GO:0000781 ... W7X6T2 37330293
    814175 8gar:A (1.55) BS01 HEC ? N/A Q50927 37338957
    814176 8gb1:A (2.46) BS01 YWI 3.1.5.- N/A Q9Y3Z3 37233733
    814177 8gb1:A (2.46) BS02 FE 3.1.5.- N/A Q9Y3Z3 37233733
    814178 8gb1:A (2.46) BS03 YWI 3.1.5.- N/A Q9Y3Z3 37233733
    814179 8gb1:B (2.46) BS01 YWI 3.1.5.- N/A Q9Y3Z3 37233733
    814180 8gb1:B (2.46) BS02 YWI 3.1.5.- N/A Q9Y3Z3 37233733
    814181 8gb1:B (2.46) BS03 FE 3.1.5.- N/A Q9Y3Z3 37233733
    814182 8gb1:C (2.46) BS01 YWI 3.1.5.- N/A Q9Y3Z3 37233733
    814183 8gb1:C (2.46) BS02 FE 3.1.5.- N/A Q9Y3Z3 37233733
    814184 8gb1:C (2.46) BS03 YWI 3.1.5.- N/A Q9Y3Z3 37233733
    814185 8gb1:D (2.46) BS01 YWI 3.1.5.- N/A Q9Y3Z3 37233733
    814186 8gb1:D (2.46) BS02 YWI 3.1.5.- N/A Q9Y3Z3 37233733
    814187 8gb1:D (2.46) BS03 FE 3.1.5.- N/A Q9Y3Z3 37233733
    814188 8gb2:A (3.07) BS01 FE 3.1.5.- N/A Q9Y3Z3 37233733
    814189 8gb2:B (3.07) BS01 FE 3.1.5.- N/A Q9Y3Z3 37233733
    814190 8gb2:C (3.07) BS01 FE 3.1.5.- N/A Q9Y3Z3 37233733
    814191 8gb2:D (3.07) BS01 FE 3.1.5.- N/A Q9Y3Z3 37233733
    814192 8gb4:A (2.59) BS01 MG 2.7.10.1 GO:0004672 ... P00533 N/A
    814193 8gb4:A (2.59) BS02 ANP 2.7.10.1 GO:0004672 ... P00533 N/A
    814194 8gb4:A (2.59) BS03 YW5 2.7.10.1 GO:0004672 ... P00533 N/A
    814195 8gb4:B (2.59) BS01 MG 2.7.10.1 GO:0004672 ... P00533 N/A
    814196 8gb4:B (2.59) BS02 ANP 2.7.10.1 GO:0004672 ... P00533 N/A
    814197 8gb4:B (2.59) BS03 YW5 2.7.10.1 GO:0004672 ... P00533 N/A
    814198 8gb4:C (2.59) BS01 MG 2.7.10.1 GO:0004672 ... P00533 N/A
    814199 8gb4:C (2.59) BS02 ANP 2.7.10.1 GO:0004672 ... P00533 N/A
    814200 8gb4:C (2.59) BS03 YW5 2.7.10.1 GO:0004672 ... P00533 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).