SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    814201 8gb4:D (2.59) BS01 MG 2.7.10.1 GO:0004672 ... P00533 N/A
    814202 8gb4:D (2.59) BS02 ANP 2.7.10.1 GO:0004672 ... P00533 N/A
    814203 8gb4:D (2.59) BS03 YW5 2.7.10.1 GO:0004672 ... P00533 N/A
    814204 8gbf:A (2.11) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    814205 8gbf:A (2.11) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    814206 8gbf:A (2.11) BS03 CZU 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    814207 8gbf:A (2.11) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    814208 8gbj:C (3.11) BS01 dna ? GO:0000400 ... O43502 37344589
    814209 8gbj:C (3.11) BS02 ANP ? GO:0000400 ... O43502 37344589
    814210 8gbj:C (3.11) BS03 ANP ? GO:0000400 ... O43502 37344589
    814211 8gbj:D (3.11) BS01 dna ? GO:0000400 ... O75771 37344589
    814212 8gbj:D (3.11) BS02 ANP ? GO:0000400 ... O75771 37344589
    814213 8gbj:D (3.11) BS03 ANP ? GO:0000400 ... O75771 37344589
    814214 8gbj:X (3.11) BS01 dna ? GO:0000278 ... O43543 37344589
    814215 8gbj:X (3.11) BS02 ANP ? GO:0000278 ... O43543 37344589
    814216 8gbk:A (2.9) BS01 HEB ? GO:0046872 ... P73129 38609367
    814217 8gbk:B (2.9) BS01 HEB ? GO:0046872 ... P73129 38609367
    814218 8gbk:C (2.9) BS01 HEB ? GO:0046872 ... P73129 38609367
    814219 8gbk:D (2.9) BS01 HEB ? GO:0046872 ... P73129 38609367
    814220 8gbk:E (2.9) BS01 HEB ? GO:0046872 ... P73129 38609367
    814221 8gbk:F (2.9) BS01 HEB ? GO:0046872 ... P73129 38609367
    814222 8gbk:G (2.9) BS01 HEB ? GO:0046872 ... P73129 38609367
    814223 8gbk:H (2.9) BS01 HEB ? GO:0046872 ... P73129 38609367
    814224 8gbl:A (2.24) BS01 ZN 2.3.1.- GO:0036054 ... Q9NXA8 38846003
    814225 8gbl:B (2.24) BS01 ZN 2.3.1.- GO:0036054 ... Q9NXA8 38846003
    814226 8gbn:A (2.7) BS01 ZN 2.3.1.- GO:0036054 ... Q9NXA8 38846003
    814227 8gbn:B (2.7) BS01 ZN 2.3.1.- GO:0036054 ... Q9NXA8 38846003
    814228 8gbq:B (1.74) BS01 ZN 2.3.2.27 N/A Q96EQ8 37541247
    814229 8gbq:B (1.74) BS02 ZN 2.3.2.27 N/A Q96EQ8 37541247
    814230 8gbq:B (1.74) BS03 ZN 2.3.2.27 N/A Q96EQ8 37541247
    814231 8gbt:A (2.8) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 37695261
    814232 8gbt:A (2.8) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 37695261
    814233 8gbt:A (2.8) BS03 CU 7.1.1.9 GO:0004129 ... P00396 37695261
    814234 8gbt:A (2.8) BS04 MG 7.1.1.9 GO:0004129 ... P00396 37695261
    814235 8gbt:B (2.8) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 37695261
    814236 8gbt:C (2.8) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 37695261
    814237 8gbt:F (2.8) BS01 ZN ? GO:0005740 ... P00428 37695261
    814238 8gbt:G (2.8) BS01 DMU ? GO:0005743 ... P07471 37695261
    814239 8gbt:M (2.8) BS01 DMU ? GO:0006123 ... P10175 37695261
    814240 8gbt:N (2.8) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 37695261
    814241 8gbt:N (2.8) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 37695261
    814242 8gbt:N (2.8) BS03 CU 7.1.1.9 GO:0004129 ... P00396 37695261
    814243 8gbt:N (2.8) BS04 MG 7.1.1.9 GO:0004129 ... P00396 37695261
    814244 8gbt:O (2.8) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 37695261
    814245 8gbt:O (2.8) BS02 MG 7.1.1.9 GO:0004129 ... P68530 37695261
    814246 8gbt:O (2.8) BS03 CUA 7.1.1.9 GO:0004129 ... P68530 37695261
    814247 8gbt:Q (2.8) BS01 DMU ? GO:0006123 ... P00423 37695261
    814248 8gbt:S (2.8) BS01 ZN ? GO:0005740 ... P00428 37695261
    814249 8gbt:Z (2.8) BS01 DMU ? GO:0006123 ... P10175 37695261
    814250 8gbu:A (2.5) BS01 YWE ? GO:0005198 ... P03147 37633618
    814251 8gbu:A (2.5) BS02 YWE ? GO:0005198 ... P03147 37633618
    814252 8gbu:B (2.5) BS01 YWE ? GO:0005198 ... P03147 37633618
    814253 8gbu:C (2.5) BS01 YWE ? GO:0005198 ... P03147 37633618
    814254 8gbu:C (2.5) BS02 YWE ? GO:0005198 ... P03147 37633618
    814255 8gbu:D (2.5) BS01 YWE ? GO:0005198 ... P03147 37633618
    814256 8gbu:E (2.5) BS01 YWE ? GO:0005198 ... P03147 37633618
    814257 8gbu:E (2.5) BS02 YWE ? GO:0005198 ... P03147 37633618
    814258 8gbu:F (2.5) BS01 YWE ? GO:0005198 ... P03147 37633618
    814259 8gc2:A (4.1) BS01 MAN ? GO:0000149 ... P42260 N/A
    814260 8gc2:A (4.1) BS02 DOQ ? GO:0000149 ... P42260 N/A
    814261 8gc2:B (4.1) BS01 MAN ? GO:0000149 ... P42260 N/A
    814262 8gc2:B (4.1) BS02 DOQ ? GO:0000149 ... P42260 N/A
    814263 8gc2:C (4.1) BS01 MAN ? GO:0000149 ... P42260 N/A
    814264 8gc2:C (4.1) BS02 DOQ ? GO:0000149 ... P42260 N/A
    814265 8gc2:D (4.1) BS01 MAN ? GO:0000149 ... P42260 N/A
    814266 8gc3:A (3.8) BS01 DOQ ? GO:0000149 ... P42260 N/A
    814267 8gc3:B (3.8) BS01 MAN ? GO:0000149 ... P42260 N/A
    814268 8gc3:B (3.8) BS02 DOQ ? GO:0000149 ... P42260 N/A
    814269 8gc3:C (3.8) BS01 MAN ? GO:0000149 ... P42260 N/A
    814270 8gc3:C (3.8) BS02 DOQ ? GO:0000149 ... P42260 N/A
    814271 8gc3:D (3.8) BS01 MAN ? GO:0000149 ... P42260 N/A
    814272 8gc3:D (3.8) BS02 DOQ ? GO:0000149 ... P42260 N/A
    814273 8gc4:A (3.93) BS01 DOQ ? GO:0000149 ... P42260 N/A
    814274 8gc4:B (3.93) BS01 DOQ ? GO:0000149 ... P42260 N/A
    814275 8gc4:C (3.93) BS01 DOQ ? GO:0000149 ... P42260 N/A
    814276 8gc4:D (3.93) BS01 DOQ ? GO:0000149 ... P42260 N/A
    814277 8gc5:A (3.93) BS01 DOQ ? GO:0000149 ... P42260 N/A
    814278 8gc5:B (3.93) BS01 DOQ ? GO:0000149 ... P42260 N/A
    814279 8gc5:C (3.93) BS01 DOQ ? GO:0000149 ... P42260 N/A
    814280 8gc5:D (3.93) BS01 DOQ ? GO:0000149 ... P42260 N/A
    814281 8gc7:A (1.9) BS01 YXJ 2.7.10.2 GO:0004672 ... Q06187 38301010
    814282 8gc8:A (1.75) BS01 YXJ 2.7.10.2 GO:0004672 ... Q06187 38301010
    814283 8gc9:A (1.85) BS01 YWQ 4.6.1.18 GO:0003676 ... P61823 39071052
    814284 8gc9:B (1.85) BS01 YWQ 4.6.1.18 GO:0003676 ... P61823 39071052
    814285 8gcb:B (2.39) BS01 ZN 2.3.2.27 N/A Q96EQ8 37541247
    814286 8gcb:B (2.39) BS02 ZN 2.3.2.27 N/A Q96EQ8 37541247
    814287 8gcb:B (2.39) BS03 ZN 2.3.2.27 N/A Q96EQ8 37541247
    814288 8gcc:A (2.94) BS01 dna 5.6.2.2 GO:0003677 ... Q4DE53 37384702
    814289 8gcc:A (2.94) BS02 dna 5.6.2.2 GO:0003677 ... Q4DE53 37384702
    814290 8gcc:A (2.94) BS03 YWX 5.6.2.2 GO:0003677 ... Q4DE53 37384702
    814291 8gcc:B (2.94) BS01 dna 5.6.2.2 GO:0003677 ... Q4DE53 37384702
    814292 8gcc:B (2.94) BS02 dna 5.6.2.2 GO:0003677 ... Q4DE53 37384702
    814293 8gcc:B (2.94) BS03 YWX 5.6.2.2 GO:0003677 ... Q4DE53 37384702
    814294 8gcd:A (2.97) BS01 CA ? GO:0007155 ... P08514 38579706
    814295 8gcd:A (2.97) BS02 CA ? GO:0007155 ... P08514 38579706
    814296 8gcd:A (2.97) BS03 CA ? GO:0007155 ... P08514 38579706
    814297 8gcd:A (2.97) BS04 CA ? GO:0007155 ... P08514 38579706
    814298 8gcd:A (2.97) BS05 CA ? GO:0007155 ... P08514 38579706
    814299 8gcd:B (2.97) BS01 MG ? N/A P05106 38579706
    814300 8gcd:B (2.97) BS02 CA ? N/A P05106 38579706
    814301 8gcd:B (2.97) BS03 CA ? N/A P05106 38579706
    814302 8gce:A (3.12) BS01 CA ? GO:0007155 ... P08514 38579706
    814303 8gce:A (3.12) BS02 CA ? GO:0007155 ... P08514 38579706
    814304 8gce:A (3.12) BS03 CA ? GO:0007155 ... P08514 38579706
    814305 8gce:A (3.12) BS04 CA ? GO:0007155 ... P08514 38579706
    814306 8gce:B (3.12) BS01 MG ? N/A P05106 38579706
    814307 8gce:B (3.12) BS02 CA ? N/A P05106 38579706
    814308 8gce:B (3.12) BS03 CA ? N/A P05106 38579706
    814309 8gcg:A (1.47) BS01 peptide N/A N/A Q00987 37312849
    814310 8gch:F (1.6) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 2036388
    814311 8gch:G (1.6) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 2036388
    814312 8gch:G (1.6) BS02 peptide 3.4.21.1 GO:0004252 ... P00766 2036388
    814313 8gck:A (1.36824) BS01 peptide 2.3.2.27 N/A Q9UNE7 N/A
    814314 8gck:B (1.36824) BS01 peptide 2.3.2.27 N/A Q9UNE7 N/A
    814315 8gcm:R (3.5) BS01 YX9 ? GO:0001818 ... P35408 37478163
    814316 8gcp:R (3.1) BS01 P2E ? GO:0001818 ... P35408 37478163
    814317 8gcq:A (2.38) BS01 CU 7.1.1.9 GO:0004129 ... P00396 37717031
    814318 8gcq:A (2.38) BS02 MG 7.1.1.9 GO:0004129 ... P00396 37717031
    814319 8gcq:A (2.38) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 37717031
    814320 8gcq:A (2.38) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 37717031
    814321 8gcq:B (2.38) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 37717031
    814322 8gcq:B (2.38) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 37717031
    814323 8gcq:C (2.38) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 37717031
    814324 8gcq:C (2.38) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 37717031
    814325 8gcq:D (2.38) BS01 DMU ? GO:0006123 ... P00423 37717031
    814326 8gcq:F (2.38) BS01 ZN ? GO:0005740 ... P00428 37717031
    814327 8gcq:G (2.38) BS01 DMU ? GO:0005743 ... P07471 37717031
    814328 8gcq:G (2.38) BS02 DMU ? GO:0005743 ... P07471 37717031
    814329 8gcq:M (2.38) BS01 DMU ? GO:0006123 ... P10175 37717031
    814330 8gcq:N (2.38) BS01 CU 7.1.1.9 GO:0004129 ... P00396 37717031
    814331 8gcq:N (2.38) BS02 MG 7.1.1.9 GO:0004129 ... P00396 37717031
    814332 8gcq:N (2.38) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 37717031
    814333 8gcq:N (2.38) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 37717031
    814334 8gcq:O (2.38) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 37717031
    814335 8gcq:Q (2.38) BS01 DMU ? GO:0006123 ... P00423 37717031
    814336 8gcq:S (2.38) BS01 ZN ? GO:0005740 ... P00428 37717031
    814337 8gcq:Z (2.38) BS01 DMU ? GO:0006123 ... P10175 37717031
    814338 8gcr:A (3.38) BS01 ZN ? GO:0003677 ... P03126
    P0AEX9
    38418456
    814339 8gcr:A (3.38) BS02 ZN ? GO:0003677 ... P03126
    P0AEX9
    38418456
    814340 8gcr:B (3.38) BS01 ZN ? GO:0000976 ... P04637 38418456
    814341 8gcw:A (3.1) BS01 peptide 3.2.2.22 GO:0017148 ... Q8XBV2 38873918
    814342 8gcx:A (3.2) BS01 TSL 3.5.2.6 GO:0005576 ... P9WKD3 37679343
    814343 8gcx:B (3.2) BS01 TSL 3.5.2.6 GO:0005576 ... P9WKD3 37679343
    814344 8gcx:C (3.2) BS01 TSL 3.5.2.6 GO:0005576 ... P9WKD3 37679343
    814345 8gcx:D (3.2) BS01 TSL 3.5.2.6 GO:0005576 ... P9WKD3 37679343
    814346 8gcy:A (1.81) BS01 ZN 2.3.2.27 GO:0001784 ... Q13191 38104184
    814347 8gcy:A (1.81) BS02 ZN 2.3.2.27 GO:0001784 ... Q13191 38104184
    814348 8gcy:A (1.81) BS03 Z3N 2.3.2.27 GO:0001784 ... Q13191 38104184
    814349 8gcz:A (2.4) BS01 YZI ? GO:0019031 ... A0A0M3KKW9 37243271
    814350 8gd0:A (2.4) BS01 Z3F ? GO:0019031 ... A0A0M3KKW9 37243271
    814351 8gd1:A (2.85) BS01 Z1I ? GO:0019031 ... A0A0M3KKW9 37243271
    814352 8gd2:B (1.13) BS01 Z5H ? GO:0002138 ... P09455 37713257
    814353 8gd3:A (2.19) BS01 Z1Z ? GO:0019031 ... A0A0M3KKW9 37243271
    814354 8gd4:A (2.0) BS01 Z4I ? N/A F8W4B7 37782298
    814355 8gd4:A (2.0) BS02 ZN ? N/A F8W4B7 37782298
    814356 8gd4:B (2.0) BS01 Z4I ? N/A F8W4B7 37782298
    814357 8gd4:B (2.0) BS02 ZN ? N/A F8W4B7 37782298
    814358 8gd5:A (2.6) BS01 Z2O ? GO:0019031 ... A0A0M3KKW9 37243271
    814359 8gd7:A (3.24) BS01 dna N/A GO:0003676 ... O75417 38580648
    814360 8gd7:A (3.24) BS02 dna N/A GO:0003676 ... O75417 38580648
    814361 8gd7:A (3.24) BS03 MG N/A GO:0003676 ... O75417 38580648
    814362 8gd7:A (3.24) BS04 DG3 N/A GO:0003676 ... O75417 38580648
    814363 8gd7:A (3.24) BS05 Z5X N/A GO:0003676 ... O75417 38580648
    814364 8gd9:R (3.2) BS01 Z2C ? GO:0001818 ... P35408 37478163
    814365 8gda:R (3.3) BS01 YZV ? GO:0001818 ... P35408 37478163
    814366 8gdb:R (3.1) BS01 P2E ? GO:0001818 ... P35408 37478163
    814367 8gdc:R (3.5) BS01 P2E ? GO:0004930 ... P43115 37478163
    814368 8gdi:A (1.81) BS01 HEM ? GO:0004497 ... B2HHT9 37141947
    814369 8gdi:A (1.81) BS02 0GV ? GO:0004497 ... B2HHT9 37141947
    814370 8gdj:A (2.42) BS01 Z6F ? GO:0019031 ... A0A0M3KKW9 N/A
    814371 8gdk:A (2.65) BS01 Z7N ? GO:0019031 ... A0A0M3KKW9 N/A
    814372 8gdl:A (1.75) BS01 SRO 3.1.3.2 N/A A2IA89 38110569
    814373 8gdl:B (1.75) BS01 SRO 3.1.3.2 N/A A2IA89 38110569
    814374 8gdm:A (1.8) BS01 ZA6 ? GO:0002138 ... P09455 37713257
    814375 8gdn:A (1.99) BS01 COA 1.1.1.88 GO:0004420 ... P13702 38327055
    814376 8gdn:A (1.99) BS02 MEV 1.1.1.88 GO:0004420 ... P13702 38327055
    814377 8gdn:A (1.99) BS03 SO4 1.1.1.88 GO:0004420 ... P13702 38327055
    814378 8gdn:A (1.99) BS04 NAD 1.1.1.88 GO:0004420 ... P13702 38327055
    814379 8gdn:B (1.99) BS01 COA 1.1.1.88 GO:0004420 ... P13702 38327055
    814380 8gdn:B (1.99) BS02 NAD 1.1.1.88 GO:0004420 ... P13702 38327055
    814381 8gdn:B (1.99) BS03 MEV 1.1.1.88 GO:0004420 ... P13702 38327055
    814382 8gds:A (2.71) BS01 Z8O 2.7.11.1 GO:0004672 ... O75116 37119973
    814383 8gds:B (2.71) BS01 Z8O 2.7.11.1 GO:0004672 ... O75116 37119973
    814384 8gds:C (2.71) BS01 Z8O 2.7.11.1 GO:0004672 ... O75116 37119973
    814385 8gds:D (2.71) BS01 Z8O 2.7.11.1 GO:0004672 ... O75116 37119973
    814386 8gdu:A (2.01) BS01 SAH ? GO:0008168 ... Q8TNZ0 38358135
    814387 8gdv:A (3.3) BS01 peptide ? GO:0016032 ... P12493 N/A
    814388 8gdv:A (3.3) BS02 peptide ? GO:0016032 ... P12493 N/A
    814389 8gdv:B (3.3) BS01 peptide ? GO:0016032 ... P12493 N/A
    814390 8gdv:C (3.3) BS01 peptide ? GO:0016032 ... P12493 N/A
    814391 8gdv:D (3.3) BS01 peptide ? GO:0016032 ... P12493 N/A
    814392 8gdv:D (3.3) BS02 peptide ? GO:0016032 ... P12493 N/A
    814393 8gdv:E (3.3) BS01 peptide ? GO:0016032 ... P12493 N/A
    814394 8gdv:F (3.3) BS01 peptide ? GO:0016032 ... P12493 N/A
    814395 8gdv:F (3.3) BS02 peptide ? GO:0016032 ... P12493 N/A
    814396 8gdw:AAA (2.35) BS01 ZN ? GO:0046872 ... P73129 38609367
    814397 8gdw:BBB (2.35) BS01 ZN ? GO:0046872 ... P73129 38609367
    814398 8gdw:CCC (2.35) BS01 ZN ? GO:0046872 ... P73129 38609367
    814399 8gdw:DDD (2.35) BS01 ZN ? GO:0046872 ... P73129 38609367
    814400 8gdx:A (2.74) BS01 ZN ? N/A Q6IE81 38448574

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).