SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    815001 8g2d:1t (2.7) BS01 rna ? GO:0003723 ... P80380 38238495
    815002 8g2d:20 (2.7) BS01 rna ? GO:0003735 ... P60493 38238495
    815003 8g2d:20 (2.7) BS02 rna ? GO:0003735 ... P60493 38238495
    815004 8g2d:21 (2.7) BS01 rna ? GO:0003735 ... P60494 38238495
    815005 8g2d:21 (2.7) BS02 rna ? GO:0003735 ... P60494 38238495
    815006 8g2d:21 (2.7) BS03 MG ? GO:0003735 ... P60494 38238495
    815007 8g2d:22 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 38238495
    815008 8g2d:23 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 38238495
    815009 8g2d:23 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 38238495
    815010 8g2d:23 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 38238495
    815011 8g2d:23 (2.7) BS04 MG ? GO:0003735 ... Q5SHQ6 38238495
    815012 8g2d:24 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 38238495
    815013 8g2d:24 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 38238495
    815014 8g2d:25 (2.7) BS01 rna ? GO:0003735 ... P80339 38238495
    815015 8g2d:25 (2.7) BS02 MG ? GO:0003735 ... P80339 38238495
    815016 8g2d:25 (2.7) BS03 ZN ? GO:0003735 ... P80339 38238495
    815017 8g2d:26 (2.7) BS01 rna ? GO:0003735 ... P35871 38238495
    815018 8g2d:26 (2.7) BS02 MG ? GO:0003735 ... P35871 38238495
    815019 8g2d:26 (2.7) BS03 ZN ? GO:0003735 ... P35871 38238495
    815020 8g2d:27 (2.7) BS01 rna ? GO:0003735 ... P80340 38238495
    815021 8g2d:28 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 38238495
    815022 8g2d:29 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 38238495
    815023 8g2d:29 (2.7) BS02 MG ? GO:0003735 ... Q5SHR2 38238495
    815024 8g2d:29 (2.7) BS03 ZN ? GO:0003735 ... Q5SHR2 38238495
    815025 8g2d:2D (2.7) BS01 rna ? GO:0002181 ... P60405 38238495
    815026 8g2d:2D (2.7) BS02 rna ? GO:0002181 ... P60405 38238495
    815027 8g2d:2D (2.7) BS03 MG ? GO:0002181 ... P60405 38238495
    815028 8g2d:2D (2.7) BS04 MG ? GO:0002181 ... P60405 38238495
    815029 8g2d:2D (2.7) BS05 MG ? GO:0002181 ... P60405 38238495
    815030 8g2d:2D (2.7) BS06 MG ? GO:0002181 ... P60405 38238495
    815031 8g2d:2E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 38238495
    815032 8g2d:2E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 38238495
    815033 8g2d:2F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 38238495
    815034 8g2d:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 38238495
    815035 8g2d:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 38238495
    815036 8g2d:2F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 38238495
    815037 8g2d:2G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 38238495
    815038 8g2d:2G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 38238495
    815039 8g2d:2G (2.7) BS03 rna ? GO:0000049 ... Q5SHQ0 38238495
    815040 8g2d:2H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 38238495
    815041 8g2d:2I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 38238495
    815042 8g2d:2N (2.7) BS01 rna ? GO:0003729 ... P60488 38238495
    815043 8g2d:2O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 38238495
    815044 8g2d:2O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 38238495
    815045 8g2d:2P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 38238495
    815046 8g2d:2Q (2.7) BS01 rna ? GO:0003735 ... P60489 38238495
    815047 8g2d:2Q (2.7) BS02 rna ? GO:0003735 ... P60489 38238495
    815048 8g2d:2Q (2.7) BS03 rna ? GO:0003735 ... P60489 38238495
    815049 8g2d:2Q (2.7) BS04 MG ? GO:0003735 ... P60489 38238495
    815050 8g2d:2Q (2.7) BS05 MG ? GO:0003735 ... P60489 38238495
    815051 8g2d:2R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 38238495
    815052 8g2d:2S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 38238495
    815053 8g2d:2S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 38238495
    815054 8g2d:2T (2.7) BS01 rna ? GO:0003735 ... P60490 38238495
    815055 8g2d:2T (2.7) BS02 rna ? GO:0003735 ... P60490 38238495
    815056 8g2d:2U (2.7) BS01 rna ? GO:0000027 ... P60491 38238495
    815057 8g2d:2U (2.7) BS02 MG ? GO:0000027 ... P60491 38238495
    815058 8g2d:2V (2.7) BS01 rna ? GO:0003723 ... P60492 38238495
    815059 8g2d:2V (2.7) BS02 MG ? GO:0003723 ... P60492 38238495
    815060 8g2d:2V (2.7) BS03 MG ? GO:0003723 ... P60492 38238495
    815061 8g2d:2V (2.7) BS04 MG ? GO:0003723 ... P60492 38238495
    815062 8g2d:2W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 38238495
    815063 8g2d:2W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 38238495
    815064 8g2d:2X (2.7) BS01 rna ? GO:0003735 ... Q5SHP0 38238495
    815065 8g2d:2X (2.7) BS02 MG ? GO:0003735 ... Q5SHP0 38238495
    815066 8g2d:2Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 38238495
    815067 8g2d:2Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 38238495
    815068 8g2d:2Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 38238495
    815069 8g2d:2Z (2.7) BS02 MG ? GO:0003723 ... Q5SHZ1 38238495
    815070 8g2d:2b (2.7) BS01 rna ? GO:0003735 ... P80371 38238495
    815071 8g2d:2c (2.7) BS01 rna ? GO:0003676 ... P80372 38238495
    815072 8g2d:2d (2.7) BS01 rna ? GO:0003723 ... P80373 38238495
    815073 8g2d:2d (2.7) BS02 MG ? GO:0003723 ... P80373 38238495
    815074 8g2d:2d (2.7) BS03 SF4 ? GO:0003723 ... P80373 38238495
    815075 8g2d:2e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 38238495
    815076 8g2d:2e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 38238495
    815077 8g2d:2f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 38238495
    815078 8g2d:2f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 38238495
    815079 8g2d:2g (2.7) BS01 rna ? GO:0000049 ... P17291 38238495
    815080 8g2d:2g (2.7) BS02 rna ? GO:0000049 ... P17291 38238495
    815081 8g2d:2h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 38238495
    815082 8g2d:2i (2.7) BS01 rna ? GO:0003723 ... P80374 38238495
    815083 8g2d:2i (2.7) BS02 rna ? GO:0003723 ... P80374 38238495
    815084 8g2d:2j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 38238495
    815085 8g2d:2k (2.7) BS01 rna ? GO:0003735 ... P80376 38238495
    815086 8g2d:2k (2.7) BS02 MG ? GO:0003735 ... P80376 38238495
    815087 8g2d:2l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 38238495
    815088 8g2d:2l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 38238495
    815089 8g2d:2m (2.7) BS01 rna ? GO:0000049 ... P80377 38238495
    815090 8g2d:2n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 38238495
    815091 8g2d:2n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 38238495
    815092 8g2d:2o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 38238495
    815093 8g2d:2o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 38238495
    815094 8g2d:2p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 38238495
    815095 8g2d:2q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 38238495
    815096 8g2d:2q (2.7) BS02 MG ? GO:0003735 ... P0DOY7 38238495
    815097 8g2d:2q (2.7) BS03 MG ? GO:0003735 ... P0DOY7 38238495
    815098 8g2d:2r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 38238495
    815099 8g2d:2r (2.7) BS02 MG ? GO:0003735 ... Q5SLQ0 38238495
    815100 8g2d:2s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 38238495
    815101 8g2d:2t (2.7) BS01 rna ? GO:0003723 ... P80380 38238495
    815102 8g2d:2t (2.7) BS02 MG ? GO:0003723 ... P80380 38238495
    815103 8g2e:A (1.838) BS01 YII 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 37242488
    815104 8g2e:A (1.838) BS02 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 37242488
    815105 8g2e:A (1.838) BS03 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 37242488
    815106 8g2f:A (2.06) BS01 DVS 2.1.1.319 GO:0016274 ... O60678 38045046
    815107 8g2g:A (2.02) BS01 YVU 2.1.1.319 GO:0016274 ... O60678 38045046
    815108 8g2g:B (2.02) BS01 YVU 2.1.1.319 GO:0016274 ... O60678 38045046
    815109 8g2h:A (1.49) BS01 YVU 2.1.1.319 GO:0016274 ... Q86X55 38045046
    815110 8g2i:A (2.17) BS01 I0B 2.1.1.319 GO:0016274 ... Q86X55 38045046
    815111 8g2j:C (3.3) BS01 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    815112 8g2j:C (3.3) BS02 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    815113 8g2j:C (3.3) BS03 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    815114 8g2j:C (3.3) BS04 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    815115 8g2j:C (3.3) BS05 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    815116 8g2j:C (3.3) BS06 UPG 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    815117 8g2j:D (3.3) BS01 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    815118 8g2j:D (3.3) BS02 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    815119 8g2j:D (3.3) BS03 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    815120 8g2j:D (3.3) BS04 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    815121 8g2j:D (3.3) BS05 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    815122 8g2j:D (3.3) BS06 UPG 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    815123 8g2j:I (3.3) BS01 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    815124 8g2j:I (3.3) BS02 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    815125 8g2j:I (3.3) BS03 BGC 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    815126 8g2j:I (3.3) BS04 UPG 2.4.1.12 GO:0005886 ... Q6J8X0 36798277
    815127 8g2l:A (1.42) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    815128 8g2l:A (1.42) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    815129 8g2l:A (1.42) BS03 NAJ 1.1.1.1 GO:0004022 ... P00327 N/A
    815130 8g2l:A (1.42) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 N/A
    815131 8g2l:B (1.42) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    815132 8g2l:B (1.42) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    815133 8g2l:B (1.42) BS03 NAJ 1.1.1.1 GO:0004022 ... P00327 N/A
    815134 8g2l:B (1.42) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 N/A
    815135 8g2m:H (1.8) BS01 peptide N/A N/A N/A 38164757
    815136 8g2m:L (1.8) BS01 peptide N/A N/A N/A 38164757
    815137 8g2p:A (2.521) BS01 dna N/A N/A Q8C6L5 N/A
    815138 8g2p:A (2.521) BS02 dna N/A N/A Q8C6L5 N/A
    815139 8g2p:A (2.521) BS03 dna N/A N/A Q8C6L5 N/A
    815140 8g2p:A (2.521) BS04 ATP N/A N/A Q8C6L5 N/A
    815141 8g2p:A (2.521) BS05 GTP N/A N/A Q8C6L5 N/A
    815142 8g2p:A (2.521) BS06 MG N/A N/A Q8C6L5 N/A
    815143 8g2p:A (2.521) BS07 ZN N/A N/A Q8C6L5 N/A
    815144 8g2p:C (2.521) BS01 dna N/A N/A Q8C6L5 N/A
    815145 8g2p:C (2.521) BS02 dna N/A N/A Q8C6L5 N/A
    815146 8g2p:C (2.521) BS03 dna N/A N/A Q8C6L5 N/A
    815147 8g2p:C (2.521) BS04 ATP N/A N/A Q8C6L5 N/A
    815148 8g2p:C (2.521) BS05 GTP N/A N/A Q8C6L5 N/A
    815149 8g2p:C (2.521) BS06 MG N/A N/A Q8C6L5 N/A
    815150 8g2p:C (2.521) BS07 ZN N/A N/A Q8C6L5 N/A
    815151 8g2q:A (2.37) BS01 dna N/A N/A Q8C6L5 N/A
    815152 8g2q:A (2.37) BS02 dna N/A N/A Q8C6L5 N/A
    815153 8g2q:A (2.37) BS03 dna N/A N/A Q8C6L5 N/A
    815154 8g2q:A (2.37) BS04 dna N/A N/A Q8C6L5 N/A
    815155 8g2q:A (2.37) BS05 GTP N/A N/A Q8C6L5 N/A
    815156 8g2q:A (2.37) BS06 GTP N/A N/A Q8C6L5 N/A
    815157 8g2q:A (2.37) BS07 MG N/A N/A Q8C6L5 N/A
    815158 8g2q:A (2.37) BS08 ZN N/A N/A Q8C6L5 N/A
    815159 8g2q:C (2.37) BS01 dna N/A N/A Q8C6L5 N/A
    815160 8g2q:C (2.37) BS02 dna N/A N/A Q8C6L5 N/A
    815161 8g2q:C (2.37) BS03 dna N/A N/A Q8C6L5 N/A
    815162 8g2q:C (2.37) BS04 GTP N/A N/A Q8C6L5 N/A
    815163 8g2q:C (2.37) BS05 GTP N/A N/A Q8C6L5 N/A
    815164 8g2q:C (2.37) BS06 MG N/A N/A Q8C6L5 N/A
    815165 8g2q:C (2.37) BS07 ZN N/A N/A Q8C6L5 N/A
    815166 8g2r:A (1.28) BS01 NXL 3.5.2.6 GO:0008800 ... Q9F663 37750722
    815167 8g2s:A (1.45) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    815168 8g2s:A (1.45) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    815169 8g2s:A (1.45) BS03 NAJ 1.1.1.1 GO:0004022 ... P00327 N/A
    815170 8g2s:B (1.45) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    815171 8g2s:B (1.45) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    815172 8g2s:B (1.45) BS03 NAJ 1.1.1.1 GO:0004022 ... P00327 N/A
    815173 8g2t:A (1.26) BS01 YOZ 3.5.2.6 GO:0008800 ... Q9F663 37750722
    815174 8g2u:0 (3.0) BS01 rna ? GO:0000027 ... P0A7N4 38244547
    815175 8g2u:1 (3.0) BS01 rna ? GO:0000027 ... P0A7N9 38244547
    815176 8g2u:2 (3.0) BS01 rna ? GO:0002181 ... P0A7P5 38244547
    815177 8g2u:3 (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 38244547
    815178 8g2u:4 (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 38244547
    815179 8g2u:C (3.0) BS01 rna ? GO:0000027 ... P60422 38244547
    815180 8g2u:C (3.0) BS02 rna ? GO:0000027 ... P60422 38244547
    815181 8g2u:D (3.0) BS01 rna ? GO:0000027 ... P60438 38244547
    815182 8g2u:E (3.0) BS01 rna ? GO:0001070 ... P60723 38244547
    815183 8g2u:F (3.0) BS01 rna ? GO:0000027 ... P62399 38244547
    815184 8g2u:F (3.0) BS02 rna ? GO:0000027 ... P62399 38244547
    815185 8g2u:G (3.0) BS01 rna ? GO:0000027 ... P0AG55 38244547
    815186 8g2u:J (3.0) BS01 rna ? GO:0002181 ... P0AA10 38244547
    815187 8g2u:K (3.0) BS01 rna ? GO:0002181 ... P0ADY3 38244547
    815188 8g2u:K (3.0) BS02 rna ? GO:0002181 ... P0ADY3 38244547
    815189 8g2u:L (3.0) BS01 rna ? GO:0002181 ... P02413 38244547
    815190 8g2u:M (3.0) BS01 rna ? GO:0000027 ... P0ADY7 38244547
    815191 8g2u:N (3.0) BS01 rna ? GO:0000027 ... P0AG44 38244547
    815192 8g2u:O (3.0) BS01 rna ? GO:0002181 ... P0C018 38244547
    815193 8g2u:O (3.0) BS02 rna ? GO:0002181 ... P0C018 38244547
    815194 8g2u:P (3.0) BS01 rna ? GO:0000027 ... P0A7K6 38244547
    815195 8g2u:Q (3.0) BS01 rna ? GO:0000027 ... P0A7L3 38244547
    815196 8g2u:R (3.0) BS01 rna ? GO:0002181 ... P0AG48 38244547
    815197 8g2u:S (3.0) BS01 rna ? GO:0002181 ... P61175 38244547
    815198 8g2u:T (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 38244547
    815199 8g2u:U (3.0) BS01 rna ? GO:0000027 ... P60624 38244547
    815200 8g2u:V (3.0) BS01 rna ? GO:0000027 ... P68919 38244547

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).