SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    815601 8g2z:VH (4.1) BS01 GDP ? GO:0003924 ... P41352 37061538
    815602 8g2z:VI (4.1) BS01 GTP 3.6.5.- GO:0005200 ... P41351 37061538
    815603 8g2z:VJ (4.1) BS01 GDP ? GO:0003924 ... P41352 37061538
    815604 8g2z:VK (4.1) BS01 GTP 3.6.5.- GO:0005200 ... P41351 37061538
    815605 8g2z:VK (4.1) BS02 MG 3.6.5.- GO:0005200 ... P41351 37061538
    815606 8g2z:VL (4.1) BS01 GDP ? GO:0003924 ... P41352 37061538
    815607 8g2z:VM (4.1) BS01 GTP 3.6.5.- GO:0005200 ... P41351 37061538
    815608 8g2z:VN (4.1) BS01 GDP ? GO:0003924 ... P41352 37061538
    815609 8g2z:WA (4.1) BS01 GTP 3.6.5.- GO:0005200 ... P41351 37061538
    815610 8g2z:WA (4.1) BS02 MG 3.6.5.- GO:0005200 ... P41351 37061538
    815611 8g2z:WB (4.1) BS01 GDP ? GO:0003924 ... P41352 37061538
    815612 8g2z:WC (4.1) BS01 GTP 3.6.5.- GO:0005200 ... P41351 37061538
    815613 8g2z:WD (4.1) BS01 GDP ? GO:0003924 ... P41352 37061538
    815614 8g2z:WE (4.1) BS01 GTP 3.6.5.- GO:0005200 ... P41351 37061538
    815615 8g2z:WE (4.1) BS02 MG 3.6.5.- GO:0005200 ... P41351 37061538
    815616 8g2z:WF (4.1) BS01 GTP ? GO:0003924 ... P41352 37061538
    815617 8g2z:WF (4.1) BS02 GDP ? GO:0003924 ... P41352 37061538
    815618 8g2z:WG (4.1) BS01 GTP 3.6.5.- GO:0005200 ... P41351 37061538
    815619 8g2z:WH (4.1) BS01 GDP ? GO:0003924 ... P41352 37061538
    815620 8g2z:WI (4.1) BS01 GTP 3.6.5.- GO:0005200 ... P41351 37061538
    815621 8g2z:WI (4.1) BS02 MG 3.6.5.- GO:0005200 ... P41351 37061538
    815622 8g2z:WJ (4.1) BS01 GDP ? GO:0003924 ... P41352 37061538
    815623 8g2z:WK (4.1) BS01 GTP 3.6.5.- GO:0005200 ... P41351 37061538
    815624 8g2z:WK (4.1) BS02 MG 3.6.5.- GO:0005200 ... P41351 37061538
    815625 8g2z:WL (4.1) BS01 GDP ? GO:0003924 ... P41352 37061538
    815626 8g2z:WM (4.1) BS01 GTP 3.6.5.- GO:0005200 ... P41351 37061538
    815627 8g2z:WN (4.1) BS01 GDP ? GO:0003924 ... P41352 37061538
    815628 8g30:M (3.1) BS01 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    815629 8g30:M (3.1) BS02 MAN 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    815630 8g30:M (3.1) BS03 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    815631 8g30:N (3.1) BS01 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    815632 8g30:N (3.1) BS02 MAN 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    815633 8g30:N (3.1) BS03 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    815634 8g30:O (3.1) BS01 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    815635 8g30:O (3.1) BS02 MAN 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    815636 8g30:O (3.1) BS03 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    815637 8g30:P (3.1) BS01 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    815638 8g30:P (3.1) BS02 MAN 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    815639 8g30:P (3.1) BS03 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    815640 8g31:0 (3.2) BS01 rna ? GO:0000027 ... P0A7N4 38244547
    815641 8g31:1 (3.2) BS01 rna ? GO:0000027 ... P0A7N9 38244547
    815642 8g31:2 (3.2) BS01 rna ? GO:0002181 ... P0A7P5 38244547
    815643 8g31:3 (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 38244547
    815644 8g31:4 (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 38244547
    815645 8g31:6 (3.2) BS01 rna ? GO:0003924 ... P25519 38244547
    815646 8g31:C (3.2) BS01 rna ? GO:0000027 ... P60422 38244547
    815647 8g31:D (3.2) BS01 rna ? GO:0000027 ... P60438 38244547
    815648 8g31:E (3.2) BS01 rna ? GO:0001070 ... P60723 38244547
    815649 8g31:F (3.2) BS01 rna ? GO:0000027 ... P62399 38244547
    815650 8g31:F (3.2) BS02 rna ? GO:0000027 ... P62399 38244547
    815651 8g31:G (3.2) BS01 rna ? GO:0000027 ... P0AG55 38244547
    815652 8g31:J (3.2) BS01 rna ? GO:0002181 ... P0AA10 38244547
    815653 8g31:K (3.2) BS01 rna ? GO:0002181 ... P0ADY3 38244547
    815654 8g31:K (3.2) BS02 rna ? GO:0002181 ... P0ADY3 38244547
    815655 8g31:L (3.2) BS01 rna ? GO:0002181 ... P02413 38244547
    815656 8g31:M (3.2) BS01 rna ? GO:0000027 ... P0ADY7 38244547
    815657 8g31:N (3.2) BS01 rna ? GO:0000027 ... P0AG44 38244547
    815658 8g31:O (3.2) BS01 rna ? GO:0002181 ... P0C018 38244547
    815659 8g31:O (3.2) BS02 rna ? GO:0002181 ... P0C018 38244547
    815660 8g31:P (3.2) BS01 rna ? GO:0000027 ... P0A7K6 38244547
    815661 8g31:P (3.2) BS02 rna ? GO:0000027 ... P0A7K6 38244547
    815662 8g31:Q (3.2) BS01 rna ? GO:0000027 ... P0A7L3 38244547
    815663 8g31:R (3.2) BS01 rna ? GO:0002181 ... P0AG48 38244547
    815664 8g31:S (3.2) BS01 rna ? GO:0002181 ... P61175 38244547
    815665 8g31:T (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 38244547
    815666 8g31:U (3.2) BS01 rna ? GO:0000027 ... P60624 38244547
    815667 8g31:V (3.2) BS01 rna ? GO:0000027 ... P68919 38244547
    815668 8g31:V (3.2) BS02 rna ? GO:0000027 ... P68919 38244547
    815669 8g31:W (3.2) BS01 rna ? GO:0000027 ... P0A7L8 38244547
    815670 8g31:W (3.2) BS02 rna ? GO:0000027 ... P0A7L8 38244547
    815671 8g31:X (3.2) BS01 rna ? GO:0000027 ... P0A7M2 38244547
    815672 8g31:Y (3.2) BS01 rna ? GO:0000027 ... P0A7M6 38244547
    815673 8g31:Z (3.2) BS01 rna ? GO:0000027 ... P0AG51 38244547
    815674 8g31:Z (3.2) BS02 rna ? GO:0000027 ... P0AG51 38244547
    815675 8g31:c (3.2) BS01 rna ? GO:0000028 ... P0A7V8 38244547
    815676 8g31:d (3.2) BS01 rna ? GO:0000028 ... P0A7W1 38244547
    815677 8g31:e (3.2) BS01 rna ? GO:0003735 ... P02358 38244547
    815678 8g31:f (3.2) BS01 rna ? GO:0003723 ... P02359 38244547
    815679 8g31:g (3.2) BS01 rna ? GO:0000028 ... P0A7W7 38244547
    815680 8g31:h (3.2) BS01 rna ? GO:0002181 ... P0A7X3 38244547
    815681 8g31:i (3.2) BS01 rna ? GO:0000049 ... P0A7R5 38244547
    815682 8g31:j (3.2) BS01 rna ? GO:0002181 ... P0A7R9 38244547
    815683 8g31:k (3.2) BS01 rna ? GO:0000049 ... P0A7S3 38244547
    815684 8g31:l (3.2) BS01 rna ? GO:0000049 ... P0A7S9 38244547
    815685 8g31:m (3.2) BS01 rna ? GO:0000028 ... P0AG59 38244547
    815686 8g31:n (3.2) BS01 rna ? GO:0000028 ... P0ADZ4 38244547
    815687 8g31:n (3.2) BS02 rna ? GO:0000028 ... P0ADZ4 38244547
    815688 8g31:o (3.2) BS01 rna ? GO:0000028 ... P0A7T3 38244547
    815689 8g31:p (3.2) BS01 rna ? GO:0000028 ... P0AG63 38244547
    815690 8g31:q (3.2) BS01 rna ? GO:0003735 ... P0A7T7 38244547
    815691 8g31:r (3.2) BS01 rna ? GO:0003723 ... P0A7U3 38244547
    815692 8g31:s (3.2) BS01 rna ? GO:0000028 ... P0A7U7 38244547
    815693 8g31:t (3.2) BS01 rna ? GO:0003735 ... P68679 38244547
    815694 8g31:u (3.2) BS01 rna ? GO:0032784 ... P0AFG0 38244547
    815695 8g31:w (3.2) BS01 rna ? GO:0000028 ... P0A7V0 38244547
    815696 8g31:x (3.2) BS01 rna ? GO:0003676 ... P0A7V3 38244547
    815697 8g32:A (1.85) BS01 CA ? GO:0015485 ... A0A1T3D3K1 38866748
    815698 8g32:B (1.85) BS01 CA ? GO:0015485 ... A0A1T3D3K1 38866748
    815699 8g34:0 (3.2) BS01 rna ? GO:0000027 ... P0A7N4 38244547
    815700 8g34:1 (3.2) BS01 rna ? GO:0000027 ... P0A7N9 38244547
    815701 8g34:2 (3.2) BS01 rna ? GO:0002181 ... P0A7P5 38244547
    815702 8g34:3 (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 38244547
    815703 8g34:4 (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 38244547
    815704 8g34:6 (3.2) BS01 rna ? GO:0003924 ... P25519 38244547
    815705 8g34:C (3.2) BS01 rna ? GO:0000027 ... P60422 38244547
    815706 8g34:C (3.2) BS02 rna ? GO:0000027 ... P60422 38244547
    815707 8g34:D (3.2) BS01 rna ? GO:0000027 ... P60438 38244547
    815708 8g34:E (3.2) BS01 rna ? GO:0001070 ... P60723 38244547
    815709 8g34:F (3.2) BS01 rna ? GO:0000027 ... P62399 38244547
    815710 8g34:F (3.2) BS02 rna ? GO:0000027 ... P62399 38244547
    815711 8g34:G (3.2) BS01 rna ? GO:0000027 ... P0AG55 38244547
    815712 8g34:J (3.2) BS01 rna ? GO:0002181 ... P0AA10 38244547
    815713 8g34:K (3.2) BS01 rna ? GO:0002181 ... P0ADY3 38244547
    815714 8g34:L (3.2) BS01 rna ? GO:0002181 ... P02413 38244547
    815715 8g34:M (3.2) BS01 rna ? GO:0000027 ... P0ADY7 38244547
    815716 8g34:N (3.2) BS01 rna ? GO:0000027 ... P0AG44 38244547
    815717 8g34:O (3.2) BS01 rna ? GO:0002181 ... P0C018 38244547
    815718 8g34:O (3.2) BS02 rna ? GO:0002181 ... P0C018 38244547
    815719 8g34:P (3.2) BS01 rna ? GO:0000027 ... P0A7K6 38244547
    815720 8g34:P (3.2) BS02 rna ? GO:0000027 ... P0A7K6 38244547
    815721 8g34:Q (3.2) BS01 rna ? GO:0000027 ... P0A7L3 38244547
    815722 8g34:R (3.2) BS01 rna ? GO:0002181 ... P0AG48 38244547
    815723 8g34:S (3.2) BS01 rna ? GO:0002181 ... P61175 38244547
    815724 8g34:T (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 38244547
    815725 8g34:U (3.2) BS01 rna ? GO:0000027 ... P60624 38244547
    815726 8g34:V (3.2) BS01 rna ? GO:0000027 ... P68919 38244547
    815727 8g34:V (3.2) BS02 rna ? GO:0000027 ... P68919 38244547
    815728 8g34:W (3.2) BS01 rna ? GO:0000027 ... P0A7L8 38244547
    815729 8g34:W (3.2) BS02 rna ? GO:0000027 ... P0A7L8 38244547
    815730 8g34:X (3.2) BS01 rna ? GO:0000027 ... P0A7M2 38244547
    815731 8g34:Y (3.2) BS01 rna ? GO:0000027 ... P0A7M6 38244547
    815732 8g34:Z (3.2) BS01 rna ? GO:0000027 ... P0AG51 38244547
    815733 8g34:c (3.2) BS01 rna ? GO:0000028 ... P0A7V8 38244547
    815734 8g34:d (3.2) BS01 rna ? GO:0000028 ... P0A7W1 38244547
    815735 8g34:e (3.2) BS01 rna ? GO:0003735 ... P02358 38244547
    815736 8g34:f (3.2) BS01 rna ? GO:0003723 ... P02359 38244547
    815737 8g34:g (3.2) BS01 rna ? GO:0000028 ... P0A7W7 38244547
    815738 8g34:h (3.2) BS01 rna ? GO:0002181 ... P0A7X3 38244547
    815739 8g34:i (3.2) BS01 rna ? GO:0000049 ... P0A7R5 38244547
    815740 8g34:j (3.2) BS01 rna ? GO:0002181 ... P0A7R9 38244547
    815741 8g34:k (3.2) BS01 rna ? GO:0000049 ... P0A7S3 38244547
    815742 8g34:l (3.2) BS01 rna ? GO:0000049 ... P0A7S9 38244547
    815743 8g34:m (3.2) BS01 rna ? GO:0000028 ... P0AG59 38244547
    815744 8g34:n (3.2) BS01 rna ? GO:0000028 ... P0ADZ4 38244547
    815745 8g34:n (3.2) BS02 rna ? GO:0000028 ... P0ADZ4 38244547
    815746 8g34:o (3.2) BS01 rna ? GO:0000028 ... P0A7T3 38244547
    815747 8g34:p (3.2) BS01 rna ? GO:0000028 ... P0AG63 38244547
    815748 8g34:q (3.2) BS01 rna ? GO:0003735 ... P0A7T7 38244547
    815749 8g34:r (3.2) BS01 rna ? GO:0003723 ... P0A7U3 38244547
    815750 8g34:s (3.2) BS01 rna ? GO:0000028 ... P0A7U7 38244547
    815751 8g34:t (3.2) BS01 rna ? GO:0003735 ... P68679 38244547
    815752 8g34:u (3.2) BS01 rna ? GO:0032784 ... P0AFG0 38244547
    815753 8g34:w (3.2) BS01 rna ? GO:0000028 ... P0A7V0 38244547
    815754 8g34:x (3.2) BS01 rna ? GO:0003676 ... P0A7V3 38244547
    815755 8g35:A (2.0) BS01 HEM ? GO:0004497 ... Q2IU02 37042073
    815756 8g35:A (2.0) BS02 YJE ? GO:0004497 ... Q2IU02 37042073
    815757 8g36:A (2.1) BS01 HEM ? GO:0004497 ... Q2IU02 37042073
    815758 8g36:A (2.1) BS02 UB7 ? GO:0004497 ... Q2IU02 37042073
    815759 8g38:0 (3.2) BS01 rna ? GO:0000027 ... P0A7N4 38244547
    815760 8g38:1 (3.2) BS01 rna ? GO:0000027 ... P0A7N9 38244547
    815761 8g38:2 (3.2) BS01 rna ? GO:0002181 ... P0A7P5 38244547
    815762 8g38:3 (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 38244547
    815763 8g38:4 (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 38244547
    815764 8g38:6 (3.2) BS01 rna ? GO:0003924 ... P25519 38244547
    815765 8g38:6 (3.2) BS02 GTP ? GO:0003924 ... P25519 38244547
    815766 8g38:C (3.2) BS01 rna ? GO:0000027 ... P60422 38244547
    815767 8g38:D (3.2) BS01 rna ? GO:0000027 ... P60438 38244547
    815768 8g38:E (3.2) BS01 rna ? GO:0001070 ... P60723 38244547
    815769 8g38:F (3.2) BS01 rna ? GO:0000027 ... P62399 38244547
    815770 8g38:F (3.2) BS02 rna ? GO:0000027 ... P62399 38244547
    815771 8g38:G (3.2) BS01 rna ? GO:0000027 ... P0AG55 38244547
    815772 8g38:J (3.2) BS01 rna ? GO:0002181 ... P0AA10 38244547
    815773 8g38:K (3.2) BS01 rna ? GO:0002181 ... P0ADY3 38244547
    815774 8g38:K (3.2) BS02 rna ? GO:0002181 ... P0ADY3 38244547
    815775 8g38:L (3.2) BS01 rna ? GO:0002181 ... P02413 38244547
    815776 8g38:M (3.2) BS01 rna ? GO:0000027 ... P0ADY7 38244547
    815777 8g38:N (3.2) BS01 rna ? GO:0000027 ... P0AG44 38244547
    815778 8g38:O (3.2) BS01 rna ? GO:0002181 ... P0C018 38244547
    815779 8g38:O (3.2) BS02 rna ? GO:0002181 ... P0C018 38244547
    815780 8g38:P (3.2) BS01 rna ? GO:0000027 ... P0A7K6 38244547
    815781 8g38:P (3.2) BS02 rna ? GO:0000027 ... P0A7K6 38244547
    815782 8g38:Q (3.2) BS01 rna ? GO:0000027 ... P0A7L3 38244547
    815783 8g38:R (3.2) BS01 rna ? GO:0002181 ... P0AG48 38244547
    815784 8g38:S (3.2) BS01 rna ? GO:0002181 ... P61175 38244547
    815785 8g38:T (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 38244547
    815786 8g38:U (3.2) BS01 rna ? GO:0000027 ... P60624 38244547
    815787 8g38:V (3.2) BS01 rna ? GO:0000027 ... P68919 38244547
    815788 8g38:V (3.2) BS02 rna ? GO:0000027 ... P68919 38244547
    815789 8g38:W (3.2) BS01 rna ? GO:0000027 ... P0A7L8 38244547
    815790 8g38:W (3.2) BS02 rna ? GO:0000027 ... P0A7L8 38244547
    815791 8g38:X (3.2) BS01 rna ? GO:0000027 ... P0A7M2 38244547
    815792 8g38:Y (3.2) BS01 rna ? GO:0000027 ... P0A7M6 38244547
    815793 8g38:Z (3.2) BS01 rna ? GO:0000027 ... P0AG51 38244547
    815794 8g38:c (3.2) BS01 rna ? GO:0000028 ... P0A7V8 38244547
    815795 8g38:d (3.2) BS01 rna ? GO:0000028 ... P0A7W1 38244547
    815796 8g38:e (3.2) BS01 rna ? GO:0003735 ... P02358 38244547
    815797 8g38:f (3.2) BS01 rna ? GO:0003723 ... P02359 38244547
    815798 8g38:g (3.2) BS01 rna ? GO:0000028 ... P0A7W7 38244547
    815799 8g38:h (3.2) BS01 rna ? GO:0002181 ... P0A7X3 38244547
    815800 8g38:i (3.2) BS01 rna ? GO:0000049 ... P0A7R5 38244547

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).