SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    816601 8go9:F (3.35) BS02 peptide ? GO:0000822 ... P32120 38175886
    816602 8goa:A (2.9) BS01 ZN 1.1.1.6
    1.1.1.75
    GO:0005829 ... P0A9S5 37165682
    816603 8goa:B (2.9) BS01 ZN 1.1.1.6
    1.1.1.75
    GO:0005829 ... P0A9S5 37165682
    816604 8goa:C (2.9) BS01 ZN 1.1.1.6
    1.1.1.75
    GO:0005829 ... P0A9S5 37165682
    816605 8goa:D (2.9) BS01 ZN 1.1.1.6
    1.1.1.75
    GO:0005829 ... P0A9S5 37165682
    816606 8gob:A (2.6) BS01 ZN 1.1.1.6
    1.1.1.75
    GO:0005829 ... P0A9S5 37165682
    816607 8gob:A (2.6) BS02 NAD 1.1.1.6
    1.1.1.75
    GO:0005829 ... P0A9S5 37165682
    816608 8gob:B (2.6) BS01 ZN 1.1.1.6
    1.1.1.75
    GO:0005829 ... P0A9S5 37165682
    816609 8gob:B (2.6) BS02 NAD 1.1.1.6
    1.1.1.75
    GO:0005829 ... P0A9S5 37165682
    816610 8goc:A (4.18) BS01 peptide ? GO:0000822 ... P32120 37209686
    816611 8goc:B (4.18) BS01 peptide ? GO:0000822 ... P32120 37209686
    816612 8goc:C (4.18) BS01 peptide ? GO:0000822 ... P32120 37209686
    816613 8goc:E (4.18) BS01 peptide N/A N/A N/A 37209686
    816614 8goc:L (4.18) BS01 peptide N/A N/A N/A 37209686
    816615 8goc:N (4.18) BS01 peptide N/A N/A N/A 37209686
    816616 8god:A (2.88) BS01 K3X 3.5.3.15 GO:0004668 ... Q9UM07 36823444
    816617 8goe:A (3.0) BS01 THH ? GO:0005886 ... P41440 36265513
    816618 8gof:A (3.0) BS01 LYA ? GO:0005886 ... P41440 36265513
    816619 8gog:A (2.0) BS01 JSU ? GO:0009374 ... P22629 N/A
    816620 8gog:B (2.0) BS01 JSU ? GO:0009374 ... P22629 N/A
    816621 8gol:A (1.6) BS01 IJC 3.1.1.- GO:0016787 ... G9I933 37468532
    816622 8gol:A (1.6) BS02 IJC 3.1.1.- GO:0016787 ... G9I933 37468532
    816623 8gol:B (1.6) BS01 IJC 3.1.1.- GO:0016787 ... G9I933 37468532
    816624 8gol:B (1.6) BS02 IJC 3.1.1.- GO:0016787 ... G9I933 37468532
    816625 8gol:C (1.6) BS01 IJC 3.1.1.- GO:0016787 ... G9I933 37468532
    816626 8gol:D (1.6) BS01 IJC 3.1.1.- GO:0016787 ... G9I933 37468532
    816627 8gom:A (2.783) BS01 peptide ? N/A A0A140T913 36806685
    816628 8gom:D (2.783) BS01 peptide N/A N/A N/A 36806685
    816629 8gom:E (2.783) BS01 peptide N/A N/A N/A 36806685
    816630 8gon:A (2.601) BS01 peptide ? N/A A0A140T913 36806685
    816631 8gon:D (2.601) BS01 peptide N/A N/A N/A 36806685
    816632 8gon:E (2.601) BS01 peptide N/A N/A N/A 36806685
    816633 8goo:A (4.4) BS01 peptide ? GO:0000822 ... P32120 37209686
    816634 8goo:B (4.4) BS01 peptide ? GO:0000822 ... P32120 37209686
    816635 8goo:C (4.4) BS01 peptide ? GO:0000822 ... P32120 37209686
    816636 8goo:E (4.4) BS01 peptide N/A N/A N/A 37209686
    816637 8goo:L (4.4) BS01 peptide N/A N/A N/A 37209686
    816638 8goo:N (4.4) BS01 peptide N/A N/A N/A 37209686
    816639 8got:A (1.989) BS01 K8U ? GO:0004197 ... A0A1U9IRU2 37253057
    816640 8goy:A (1.784) BS01 JV6 3.1.1.- GO:0016787 ... G9I933 37468532
    816641 8gp3:A (4.8) BS01 peptide ? GO:0000785 ... P29066 37209686
    816642 8gp3:B (4.8) BS01 peptide ? GO:0000785 ... P29066 37209686
    816643 8gpb:A (2.2) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 1900534
    816644 8gpb:A (2.2) BS02 AMP 2.4.1.1 GO:0000166 ... P00489 1900534 MOAD: Kd=250uM
    816645 8gpb:A (2.2) BS03 AMP 2.4.1.1 GO:0000166 ... P00489 1900534 MOAD: Kd=250uM
    816646 8gpc:A (1.4) BS01 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816647 8gpc:A (1.4) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816648 8gpc:A (1.4) BS03 ZZ7 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816649 8gpc:A (1.4) BS04 ZZ7 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816650 8gpc:B (1.4) BS01 ZZ7 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816651 8gpc:B (1.4) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816652 8gpc:B (1.4) BS03 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816653 8gpc:B (1.4) BS04 ZZ7 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816654 8gpd:A (1.4) BS01 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816655 8gpd:A (1.4) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816656 8gpd:A (1.4) BS03 JXF 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816657 8gpd:A (1.4) BS04 JXF 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816658 8gpd:B (1.4) BS01 JXF 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816659 8gpd:B (1.4) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816660 8gpd:B (1.4) BS03 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816661 8gpd:B (1.4) BS04 JXF 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816662 8gpe:A (1.4) BS01 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816663 8gpe:A (1.4) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816664 8gpe:A (1.4) BS03 PNK 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816665 8gpe:A (1.4) BS04 PNK 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816666 8gpe:B (1.4) BS01 PNK 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816667 8gpe:B (1.4) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816668 8gpe:B (1.4) BS03 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816669 8gpe:B (1.4) BS04 PNK 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    816670 8gpi:A (3.0) BS01 BMA N/A N/A N/A 37542068
    816671 8gpi:A (3.0) BS02 MAN N/A N/A N/A 37542068
    816672 8gpi:A (3.0) BS03 MAN N/A N/A N/A 37542068
    816673 8gpi:A (3.0) BS04 MAN N/A N/A N/A 37542068
    816674 8gpi:D (3.0) BS01 BMA N/A N/A N/A 37542068
    816675 8gpi:D (3.0) BS02 MAN N/A N/A N/A 37542068
    816676 8gpi:D (3.0) BS03 MAN N/A N/A N/A 37542068
    816677 8gpi:H (3.0) BS01 BMA N/A N/A N/A 37542068
    816678 8gpi:H (3.0) BS02 MAN N/A N/A N/A 37542068
    816679 8gpi:H (3.0) BS03 MAN N/A N/A N/A 37542068
    816680 8gpi:H (3.0) BS04 MAN N/A N/A N/A 37542068
    816681 8gpj:A (3.5) BS01 BMA N/A N/A N/A 37542068
    816682 8gpj:A (3.5) BS02 MAN N/A N/A N/A 37542068
    816683 8gpj:A (3.5) BS03 MAN N/A N/A N/A 37542068
    816684 8gpj:A (3.5) BS04 MAN N/A N/A N/A 37542068
    816685 8gpj:D (3.5) BS01 BMA N/A N/A N/A 37542068
    816686 8gpj:D (3.5) BS02 MAN N/A N/A N/A 37542068
    816687 8gpj:D (3.5) BS03 MAN N/A N/A N/A 37542068
    816688 8gpj:D (3.5) BS04 MAN N/A N/A N/A 37542068
    816689 8gpj:H (3.5) BS01 BMA N/A N/A N/A 37542068
    816690 8gpj:H (3.5) BS02 MAN N/A N/A N/A 37542068
    816691 8gpj:H (3.5) BS03 MAN N/A N/A N/A 37542068
    816692 8gpj:H (3.5) BS04 MAN N/A N/A N/A 37542068
    816693 8gpm:A (1.7) BS01 ZN ? GO:0046872 ... A0A6F8THQ5 N/A
    816694 8gpn:A (3.2) BS01 dna ? GO:0000786 ... P84233 36795828
    816695 8gpn:A (3.2) BS02 dna ? GO:0000786 ... P84233 36795828
    816696 8gpn:B (3.2) BS01 dna ? GO:0000786 ... P62799 36795828
    816697 8gpn:B (3.2) BS02 dna ? GO:0000786 ... P62799 36795828
    816698 8gpn:C (3.2) BS01 dna ? GO:0000786 ... P06897 36795828
    816699 8gpn:C (3.2) BS02 dna ? GO:0000786 ... P06897 36795828
    816700 8gpn:D (3.2) BS01 dna ? GO:0000786 ... P02281 36795828
    816701 8gpn:D (3.2) BS02 dna ? GO:0000786 ... P02281 36795828
    816702 8gpn:E (3.2) BS01 dna ? GO:0000786 ... P84233 36795828
    816703 8gpn:E (3.2) BS02 dna ? GO:0000786 ... P84233 36795828
    816704 8gpn:F (3.2) BS01 dna ? GO:0000786 ... P62799 36795828
    816705 8gpn:F (3.2) BS02 dna ? GO:0000786 ... P62799 36795828
    816706 8gpn:G (3.2) BS01 dna ? GO:0000786 ... P06897 36795828
    816707 8gpn:G (3.2) BS02 dna ? GO:0000786 ... P06897 36795828
    816708 8gpn:H (3.2) BS01 dna ? GO:0000786 ... P02281 36795828
    816709 8gpn:H (3.2) BS02 dna ? GO:0000786 ... P02281 36795828
    816710 8gpp:A (2.09) BS01 BCT ? GO:0046872 ... A0A6F8THQ5 N/A
    816711 8gpp:A (2.09) BS02 ZN ? GO:0046872 ... A0A6F8THQ5 N/A
    816712 8gpp:B (2.09) BS01 BCT ? GO:0046872 ... A0A6F8THQ5 N/A
    816713 8gpp:B (2.09) BS02 ZN ? GO:0046872 ... A0A6F8THQ5 N/A
    816714 8gpp:C (2.09) BS01 BCT ? GO:0046872 ... A0A6F8THQ5 N/A
    816715 8gpp:C (2.09) BS02 ZN ? GO:0046872 ... A0A6F8THQ5 N/A
    816716 8gps:A (1.39) BS01 MG N/A GO:0015095 ... N/A 37097058
    816717 8gps:A (1.39) BS02 MG N/A GO:0015095 ... N/A 37097058
    816718 8gps:A (1.39) BS03 MG N/A GO:0015095 ... N/A 37097058
    816719 8gpv:A (1.82) BS01 MG ? GO:0015095 ... A0A3D5MLJ3 37097058
    816720 8gpv:A (1.82) BS02 MG ? GO:0015095 ... A0A3D5MLJ3 37097058
    816721 8gpv:A (1.82) BS03 MG ? GO:0015095 ... A0A3D5MLJ3 37097058
    816722 8gpw:A (2.06) BS01 JXJ 3.4.16.4 GO:0008658 ... A0A0H3GN85 N/A
    816723 8gpw:B (2.06) BS01 JXJ 3.4.16.4 GO:0008658 ... A0A0H3GN85 N/A
    816724 8gpz:A (1.528) BS01 KC3 ? N/A O60885 37402749
    816725 8gq0:A (1.44) BS01 KCL ? N/A O60885 37402749
    816726 8gq6:D (3.96) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38332366
    816727 8gq6:D (3.96) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38332366
    816728 8gq6:D (3.96) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38332366
    816729 8gq6:E (3.96) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38332366
    816730 8gq6:E (3.96) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38332366
    816731 8gq6:E (3.96) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38332366
    816732 8gq9:A (2.3) BS01 CA ? N/A N/A 37550286
    816733 8gqa:A (2.29) BS01 peptide ? N/A N/A 37550286
    816734 8gqa:A (2.29) BS02 CA ? N/A N/A 37550286
    816735 8gqb:A (2.41) BS01 CA ? N/A N/A 37550286
    816736 8gqd:E (3.41) BS01 ZN ? N/A Q2G0P7 39232187
    816737 8gqm:A (1.45) BS01 ACO ? GO:0003988 ... Q9HZQ7 N/A
    816738 8gqn:A (2.7) BS01 COA ? GO:0003985 ... G3XD40 N/A
    816739 8gqn:B (2.7) BS01 COA ? GO:0003985 ... G3XD40 N/A
    816740 8gqn:C (2.7) BS01 COA ? GO:0003985 ... G3XD40 N/A
    816741 8gqn:D (2.7) BS01 COA ? GO:0003985 ... G3XD40 N/A
    816742 8gqp:A (2.0) BS01 peptide N/A N/A N/A N/A
    816743 8gqp:C (2.0) BS01 peptide N/A N/A N/A N/A
    816744 8gqr:A (2.1) BS01 FAD ? GO:0000166 ... A0A024AX32 36869636
    816745 8gqr:B (2.1) BS01 FAD ? GO:0000166 ... A0A024AX32 36869636
    816746 8gqt:D (2.09) BS01 QUE 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 N/A
    816747 8gqu:A (3.5) BS01 GH6 ? GO:0005247 ... P51788 37296152
    816748 8gqu:B (3.5) BS01 GH6 ? GO:0005247 ... P51788 37296152
    816749 8gqv:A (2.4) BS01 peptide ? N/A E3WHS2 36552780
    816750 8gqv:D (2.4) BS01 peptide ? N/A E3WHS2 36552780
    816751 8gqw:A (2.48) BS01 peptide ? N/A E3WHS2 36552780
    816752 8gqw:D (2.48) BS01 peptide ? N/A E3WHS2 36552780
    816753 8gr7:A (1.9) BS01 MG N/A GO:0010333 ... N/A 37566786
    816754 8gr7:A (1.9) BS02 PPV N/A GO:0010333 ... N/A 37566786
    816755 8gr7:B (1.9) BS01 MG N/A GO:0010333 ... N/A 37566786
    816756 8gr7:B (1.9) BS02 PPV N/A GO:0010333 ... N/A 37566786
    816757 8gr9:A (1.48) BS01 COA 2.3.3.16 GO:0004108 ... P08679 37058555
    816758 8gr9:A (1.48) BS02 OAA 2.3.3.16 GO:0004108 ... P08679 37058555
    816759 8gra:G (2.8) BS01 peptide ? N/A A0A3E5IG38 37421630
    816760 8gra:H (2.8) BS01 peptide ? N/A A0A3E5IG38 37421630
    816761 8gra:I (2.8) BS01 peptide ? N/A A0A3E5IG38 37421630
    816762 8grd:A (2.699) BS01 MG 1.1.1.41 GO:0000287 ... P50213 36375638
    816763 8grd:A (2.699) BS02 ADP 1.1.1.41 GO:0000287 ... P50213 36375638
    816764 8grd:B (2.699) BS01 ADP ? GO:0000287 ... O43837 36375638
    816765 8gri:A (2.365) BS01 FAD ? GO:0000166 ... A0A125SZC1 37137912
    816766 8gri:A (2.365) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    816767 8gri:A (2.365) BS03 I55 ? GO:0000166 ... A0A125SZC1 37137912
    816768 8gri:B (2.365) BS01 FAD ? GO:0000166 ... A0A125SZC1 37137912
    816769 8gri:B (2.365) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    816770 8gri:B (2.365) BS03 I55 ? GO:0000166 ... A0A125SZC1 37137912
    816771 8gri:C (2.365) BS01 FAD ? GO:0000166 ... A0A125SZC1 37137912
    816772 8gri:C (2.365) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    816773 8gri:C (2.365) BS03 I55 ? GO:0000166 ... A0A125SZC1 37137912
    816774 8gri:D (2.365) BS01 I55 ? GO:0000166 ... A0A125SZC1 37137912
    816775 8gri:D (2.365) BS02 FAD ? GO:0000166 ... A0A125SZC1 37137912
    816776 8gri:D (2.365) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    816777 8gri:D (2.365) BS04 I55 ? GO:0000166 ... A0A125SZC1 37137912
    816778 8gri:E (2.365) BS01 FAD ? GO:0000166 ... A0A125SZC1 37137912
    816779 8gri:E (2.365) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    816780 8gri:E (2.365) BS03 I55 ? GO:0000166 ... A0A125SZC1 37137912
    816781 8gri:F (2.365) BS01 FAD ? GO:0000166 ... A0A125SZC1 37137912
    816782 8gri:F (2.365) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    816783 8gri:F (2.365) BS03 I55 ? GO:0000166 ... A0A125SZC1 37137912
    816784 8gri:G (2.365) BS01 FAD ? GO:0000166 ... A0A125SZC1 37137912
    816785 8gri:G (2.365) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    816786 8gri:G (2.365) BS03 I55 ? GO:0000166 ... A0A125SZC1 37137912
    816787 8gri:H (2.365) BS01 FAD ? GO:0000166 ... A0A125SZC1 37137912
    816788 8gri:H (2.365) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    816789 8gri:H (2.365) BS03 I55 ? GO:0000166 ... A0A125SZC1 37137912
    816790 8grj:B (2.95) BS01 FAD ? GO:0000166 ... Q8GQE7 39326560
    816791 8grj:B (2.95) BS02 F3S ? GO:0000166 ... Q8GQE7 39326560
    816792 8grj:B (2.95) BS03 LGC ? GO:0000166 ... Q8GQE7 39326560
    816793 8grj:D (2.95) BS01 FAD ? GO:0000166 ... Q8GQE7 39326560
    816794 8grj:D (2.95) BS02 F3S ? GO:0000166 ... Q8GQE7 39326560
    816795 8grj:D (2.95) BS03 LGC ? GO:0000166 ... Q8GQE7 39326560
    816796 8grm:A (3.05) BS01 dna ? GO:0000786 ... P68431 N/A
    816797 8grm:A (3.05) BS02 dna ? GO:0000786 ... P68431 N/A
    816798 8grm:B (3.05) BS01 dna ? GO:0003677 ... P62805 N/A
    816799 8grm:B (3.05) BS02 dna ? GO:0003677 ... P62805 N/A
    816800 8grm:C (3.05) BS01 dna ? GO:0000786 ... P04908 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).