SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    816801 8grm:C (3.05) BS02 dna ? GO:0000786 ... P04908 N/A
    816802 8grm:D (3.05) BS01 dna ? GO:0000786 ... O60814 N/A
    816803 8grm:D (3.05) BS02 dna ? GO:0000786 ... O60814 N/A
    816804 8grm:E (3.05) BS01 dna ? GO:0000786 ... P68431 N/A
    816805 8grm:E (3.05) BS02 dna ? GO:0000786 ... P68431 N/A
    816806 8grm:F (3.05) BS01 dna ? GO:0003677 ... P62805 N/A
    816807 8grm:F (3.05) BS02 dna ? GO:0003677 ... P62805 N/A
    816808 8grm:G (3.05) BS01 dna ? GO:0000786 ... P04908 N/A
    816809 8grm:G (3.05) BS02 dna ? GO:0000786 ... P04908 N/A
    816810 8grm:H (3.05) BS01 dna ? GO:0000786 ... O60814 N/A
    816811 8grm:H (3.05) BS02 dna ? GO:0000786 ... O60814 N/A
    816812 8grm:M (3.05) BS01 ZN ? N/A P35226 N/A
    816813 8grm:N (3.05) BS01 ZN 2.3.2.27 GO:0000151 ... Q99496 N/A
    816814 8grm:N (3.05) BS02 ZN 2.3.2.27 GO:0000151 ... Q99496 N/A
    816815 8grm:P (3.05) BS01 dna 2.3.2.23
    2.3.2.24
    GO:0000209 ... P62837 N/A
    816816 8grq:A (3.87) BS01 dna ? GO:0000786 ... Q71DI3 N/A
    816817 8grq:A (3.87) BS02 dna ? GO:0000786 ... Q71DI3 N/A
    816818 8grq:B (3.87) BS01 dna ? GO:0003677 ... P62805 N/A
    816819 8grq:B (3.87) BS02 dna ? GO:0003677 ... P62805 N/A
    816820 8grq:C (3.87) BS01 dna ? GO:0000786 ... P04908 N/A
    816821 8grq:C (3.87) BS02 dna ? GO:0000786 ... P04908 N/A
    816822 8grq:D (3.87) BS01 dna ? GO:0000786 ... O60814 N/A
    816823 8grq:D (3.87) BS02 dna ? GO:0000786 ... O60814 N/A
    816824 8grq:E (3.87) BS01 dna ? GO:0000786 ... Q71DI3 N/A
    816825 8grq:E (3.87) BS02 dna ? GO:0000786 ... Q71DI3 N/A
    816826 8grq:F (3.87) BS01 dna ? GO:0003677 ... P62805 N/A
    816827 8grq:F (3.87) BS02 dna ? GO:0003677 ... P62805 N/A
    816828 8grq:G (3.87) BS01 dna ? GO:0000786 ... P04908 N/A
    816829 8grq:G (3.87) BS02 dna ? GO:0000786 ... P04908 N/A
    816830 8grq:H (3.87) BS01 dna ? GO:0000786 ... O60814 N/A
    816831 8grq:H (3.87) BS02 dna ? GO:0000786 ... O60814 N/A
    816832 8grq:K (3.87) BS01 ZN 2.3.2.27 GO:0006281 ... P38398 N/A
    816833 8grq:M (3.87) BS01 ZN 2.3.2.27 GO:0003697 ... Q99728 N/A
    816834 8grq:M (3.87) BS02 ZN 2.3.2.27 GO:0003697 ... Q99728 N/A
    816835 8grt:A (2.59) BS01 ALC 3.4.14.- GO:0008239 ... B4SLK2 N/A
    816836 8grt:A (2.59) BS02 TYR 3.4.14.- GO:0008239 ... B4SLK2 N/A
    816837 8grt:B (2.59) BS01 ALC 3.4.14.- GO:0008239 ... B4SLK2 N/A
    816838 8grt:B (2.59) BS02 TYR 3.4.14.- GO:0008239 ... B4SLK2 N/A
    816839 8gru:A (2.847) BS01 NAD 1.1.1.41 GO:0000287 ... P50213 36375638
    816840 8gru:A (2.847) BS02 CA 1.1.1.41 GO:0000287 ... P50213 36375638
    816841 8gru:A (2.847) BS03 NAD 1.1.1.41 GO:0000287 ... P50213 36375638
    816842 8gru:B (2.847) BS01 NAD ? GO:0000287 ... O43837 36375638
    816843 8gru:B (2.847) BS02 NAD ? GO:0000287 ... O43837 36375638
    816844 8gru:C (2.847) BS01 NAD 1.1.1.41 GO:0000287 ... P50213 36375638
    816845 8gru:C (2.847) BS02 CA 1.1.1.41 GO:0000287 ... P50213 36375638
    816846 8gru:D (2.847) BS01 NAD ? GO:0000287 ... O43837 36375638
    816847 8gru:D (2.847) BS02 NAD ? GO:0000287 ... O43837 36375638
    816848 8grv:A (2.9) BS01 NAD 1.1.1.28 GO:0008720 ... Q54UF7 N/A
    816849 8grw:A (2.40005) BS01 GDP ? GO:0003924 ... N/A 38718863
    816850 8grw:A (2.40005) BS02 GDP ? GO:0003924 ... N/A 38718863
    816851 8grw:B (2.40005) BS01 GDP ? GO:0003924 ... N/A 38718863
    816852 8grw:B (2.40005) BS02 GDP ? GO:0003924 ... N/A 38718863
    816853 8gry:A (3.29) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q5EGZ1 37479708
    816854 8grz:A (2.0) BS01 HEM 1.7.-.- GO:0001666 ... Q9NPG2 N/A
    816855 8gs1:B (2.7) BS01 LYS ? N/A B4XYC1 37043819
    816856 8gs2:A (2.84) BS01 rna ? GO:0051607 ... A0A401FT36 36423304
    816857 8gs2:A (2.84) BS02 rna ? GO:0051607 ... A0A401FT36 36423304
    816858 8gs2:A (2.84) BS03 C ? GO:0051607 ... A0A401FT36 36423304
    816859 8gs2:A (2.84) BS04 A ? GO:0051607 ... A0A401FT36 36423304
    816860 8gs2:A (2.84) BS05 ZN ? GO:0051607 ... A0A401FT36 36423304
    816861 8gs2:A (2.84) BS06 ZN ? GO:0051607 ... A0A401FT36 36423304
    816862 8gs2:A (2.84) BS07 ZN ? GO:0051607 ... A0A401FT36 36423304
    816863 8gs2:A (2.84) BS08 ZN ? GO:0051607 ... A0A401FT36 36423304
    816864 8gs2:B (2.84) BS01 A ? N/A A0A401FT52 36423304
    816865 8gs8:A (2.86) BS01 FAD 1.3.5.1 GO:0005515 ... P31040 37098072
    816866 8gs8:B (2.86) BS01 FES 1.3.5.1 GO:0005515 ... P21912 37098072
    816867 8gs8:B (2.86) BS02 SF4 1.3.5.1 GO:0005515 ... P21912 37098072
    816868 8gs8:B (2.86) BS03 F3S 1.3.5.1 GO:0005515 ... P21912 37098072
    816869 8gs8:B (2.86) BS04 UQ1 1.3.5.1 GO:0005515 ... P21912 37098072
    816870 8gs8:C (2.86) BS01 UQ1 ? GO:0005515 ... Q99643 37098072
    816871 8gs8:C (2.86) BS02 HEM ? GO:0005515 ... Q99643 37098072
    816872 8gs8:D (2.86) BS01 HEM ? GO:0005515 ... O14521 37098072
    816873 8gsg:B (2.05) BS01 peptide ? GO:0005179 ... P01308 N/A
    816874 8gsg:B (2.05) BS02 CRS ? GO:0005179 ... P01308 N/A
    816875 8gsg:D (2.05) BS01 peptide ? GO:0005179 ... P01308 N/A
    816876 8gsj:A (2.1) BS01 K8C ? GO:0008013 ... P25054 N/A
    816877 8gsj:A (2.1) BS02 GLU ? GO:0008013 ... P25054 N/A
    816878 8gsj:A (2.1) BS03 NAL ? GO:0008013 ... P25054 N/A
    816879 8gsj:A (2.1) BS04 LEU ? GO:0008013 ... P25054 N/A
    816880 8gsj:A (2.1) BS05 GJZ ? GO:0008013 ... P25054 N/A
    816881 8gsm:G (2.88) BS01 FAD ? GO:0000166 ... A0A167KUL3 N/A
    816882 8gsm:I (2.88) BS01 FAD ? GO:0000166 ... A0A167KUL3 N/A
    816883 8gsq:A (2.1) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 37204819
    816884 8gsq:B (2.1) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 37204819
    816885 8gsq:C (2.1) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 37204819
    816886 8gsq:C (2.1) BS02 K4I 1.15.1.1 GO:0000302 ... P00441 37204819
    816887 8gsq:D (2.1) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 37204819
    816888 8gsq:E (2.1) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 37204819
    816889 8gsq:F (2.1) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 37204819
    816890 8gsq:H (2.1) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 37204819
    816891 8gsq:H (2.1) BS02 K4I 1.15.1.1 GO:0000302 ... P00441 37204819
    816892 8gsq:I (2.1) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 37204819
    816893 8gsq:J (2.1) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 37204819
    816894 8gsr:A (1.73) BS01 MG ? GO:0003824 ... Q1NEI7 36563174
    816895 8gsr:B (1.73) BS01 MG ? GO:0003824 ... Q1NEI7 36563174
    816896 8gsr:C (1.73) BS01 MG ? GO:0003824 ... Q1NEI7 36563174
    816897 8gsr:D (1.73) BS01 MG ? GO:0003824 ... Q1NEI7 36563174
    816898 8gss:A (1.9) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9398518
    816899 8gss:B (1.9) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9398518
    816900 8gss:C (1.9) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9398518
    816901 8gst:A (1.71) BS01 MG ? GO:0003824 ... Q1NEI7 36563174
    816902 8gst:B (1.71) BS01 MG ? GO:0003824 ... Q1NEI7 36563174
    816903 8gst:C (1.71) BS01 MG ? GO:0003824 ... Q1NEI7 36563174
    816904 8gst:C (1.71) BS02 PYR ? GO:0003824 ... Q1NEI7 36563174
    816905 8gst:D (1.71) BS01 MG ? GO:0003824 ... Q1NEI7 36563174
    816906 8gsu:A (1.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 37009486
    816907 8gsu:B (1.5) BS01 CA ? GO:0051015 ... Q94707 37009486
    816908 8gsu:B (1.5) BS02 CA ? GO:0051015 ... Q94707 37009486
    816909 8gsv:A (2.2) BS01 peptide ? GO:0042981 ... Q16611 37315086
    816910 8gsv:C (2.2) BS01 peptide ? GO:0042981 ... Q16611 37315086
    816911 8gsv:E (2.2) BS01 peptide ? GO:0042981 ... Q16611 37315086
    816912 8gsv:G (2.2) BS01 peptide ? GO:0042981 ... Q16611 37315086
    816913 8gsv:I (2.2) BS01 peptide ? GO:0042981 ... Q16611 37315086
    816914 8gsv:K (2.2) BS01 peptide ? GO:0042981 ... Q16611 37315086
    816915 8gsv:M (2.2) BS01 peptide ? GO:0042981 ... Q16611 37315086
    816916 8gsv:O (2.2) BS01 peptide ? GO:0042981 ... Q16611 37315086
    816917 8gsv:Q (2.2) BS01 peptide ? GO:0042981 ... Q16611 37315086
    816918 8gsv:S (2.2) BS01 peptide ? GO:0042981 ... Q16611 37315086
    816919 8gsv:U (2.2) BS01 peptide ? GO:0042981 ... Q16611 37315086
    816920 8gsv:W (2.2) BS01 peptide ? GO:0042981 ... Q16611 37315086
    816921 8gsw:A (1.4) BS01 ANP 3.6.4.- GO:0000146 ... P68032 37009486
    816922 8gsw:B (1.4) BS01 CA ? GO:0051015 ... Q94707 37009486
    816923 8gsw:B (1.4) BS02 CA ? GO:0051015 ... Q94707 37009486
    816924 8gt1:A (1.35) BS01 ADP 3.6.4.- GO:0000146 ... P68032 37009486
    816925 8gt1:A (1.35) BS02 ATP 3.6.4.- GO:0000146 ... P68032 37009486
    816926 8gt1:B (1.35) BS01 CA ? GO:0051015 ... Q94707 37009486
    816927 8gt1:B (1.35) BS02 CA ? GO:0051015 ... Q94707 37009486
    816928 8gt2:A (1.5) BS01 ANP 3.6.4.- GO:0000146 ... P68032 37009486
    816929 8gt2:B (1.5) BS01 CA ? GO:0051015 ... Q94707 37009486
    816930 8gt2:B (1.5) BS02 CA ? GO:0051015 ... Q94707 37009486
    816931 8gt3:A (1.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 37009486
    816932 8gt3:B (1.5) BS01 CA ? GO:0051015 ... Q94707 37009486
    816933 8gt3:B (1.5) BS02 CA ? GO:0051015 ... Q94707 37009486
    816934 8gt4:A (1.55) BS01 ANP 3.6.4.- GO:0000146 ... P68032 37009486
    816935 8gt4:B (1.55) BS01 CA ? GO:0051015 ... Q94707 37009486
    816936 8gt4:B (1.55) BS02 CA ? GO:0051015 ... Q94707 37009486
    816937 8gt5:A (1.4) BS01 ADP 3.6.4.- GO:0000146 ... P68032 37009486
    816938 8gt5:B (1.4) BS01 CA ? GO:0051015 ... Q94707 37009486
    816939 8gt5:B (1.4) BS02 CA ? GO:0051015 ... Q94707 37009486
    816940 8gt6:A (3.47) BS01 WJ6 ? GO:0000045 ... Q86WV6 36513640
    816941 8gt6:B (3.47) BS01 WJ6 ? GO:0000045 ... Q86WV6 36513640
    816942 8gt7:C (3.28) BS01 peptide 3.4.22.- GO:0006508 ... Q8I6U4 N/A
    816943 8gtg:A (2.75) BS01 CW9 ? GO:0004888 ... P34998 37653040
    816944 8gth:A (3.1) BS01 HEC ? GO:0009055 ... A7NME2 37710959
    816945 8gth:B (3.1) BS01 HEC ? GO:0009055 ... A7NME2 37710959
    816946 8gth:C (3.1) BS01 HEC ? GO:0009055 ... A7NME2 37710959
    816947 8gth:D (3.1) BS01 HEC ? GO:0009055 ... A7NME2 37710959
    816948 8gth:E (3.1) BS01 HEC ? GO:0009055 ... A7NME2 37710959
    816949 8gth:F (3.1) BS01 HEC ? GO:0009055 ... A7NME2 37710959
    816950 8gti:A (2.2) BS01 0JS ? GO:0004888 ... P34998 37653040
    816951 8gtl:A (3.2) BS01 HEM N/A GO:0004497 ... N/A 36362105
    816952 8gtl:B (3.2) BS01 HEM N/A GO:0004497 ... N/A 36362105
    816953 8gtm:A (2.6) BS01 0VI ? GO:0004888 ... P34998 37653040
    816954 8gtu:A (2.56) BS01 KG2 ? N/A C6XGT2 37394197
    816955 8gtu:B (2.56) BS01 KG2 ? N/A C6XGT2 37394197
    816956 8gtv:A (1.8) BS01 KAE 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 N/A
    816957 8gtv:B (1.8) BS01 KAE 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 N/A
    816958 8gtw:A (1.85) BS01 K9U 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 N/A
    816959 8gtw:B (1.85) BS01 K9U 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 N/A
    816960 8gtx:A (1.8) BS01 peptide ? GO:0007276 ... Q9Y657 N/A
    816961 8gu0:A (2.42) BS01 FAD 1.14.14.- GO:0003824 ... C5H881 37509117
    816962 8gu0:B (2.42) BS01 FAD 1.14.14.- GO:0003824 ... C5H881 37509117
    816963 8gu1:A (2.65) BS01 1II ? N/A C6XGT2 37394197
    816964 8gu1:B (2.65) BS01 1II ? N/A C6XGT2 37394197
    816965 8gu6:A (3.1) BS01 rna ? GO:0051607 ... A0A0B0EGF3 36484100
    816966 8gu6:A (3.1) BS02 rna ? GO:0051607 ... A0A0B0EGF3 36484100
    816967 8gu6:A (3.1) BS03 ZN ? GO:0051607 ... A0A0B0EGF3 36484100
    816968 8gu6:A (3.1) BS04 ZN ? GO:0051607 ... A0A0B0EGF3 36484100
    816969 8gu6:A (3.1) BS05 ZN ? GO:0051607 ... A0A0B0EGF3 36484100
    816970 8gu6:A (3.1) BS06 ZN ? GO:0051607 ... A0A0B0EGF3 36484100
    816971 8gu7:A (2.6) BS01 peptide ? N/A Q8CDJ3 37409929
    816972 8gu7:C (2.6) BS01 peptide ? GO:0006914 ... A8MW95 37409929
    816973 8gua:A (2.77) BS01 1LT 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 36343266
    816974 8gub:A (2.73) BS01 1LT 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 36343266
    816975 8gud:A (2.62) BS01 1LT 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 36343266
    816976 8gue:A (1.9) BS01 HEM 1.14.15.33 GO:0004497 ... O87605 36966128
    816977 8gue:A (1.9) BS02 NRB 1.14.15.33 GO:0004497 ... O87605 36966128
    816978 8gue:B (1.9) BS01 HEM 1.14.15.33 GO:0004497 ... O87605 36966128
    816979 8gue:B (1.9) BS02 NRB 1.14.15.33 GO:0004497 ... O87605 36966128
    816980 8guh:A (1.65) BS01 K9E 2.3.1.50 GO:0004758 ... A7BFV6 36458620
    816981 8gui:A (2.81) BS01 dna ? GO:0000786 ... P68431 38519511
    816982 8gui:A (2.81) BS02 dna ? GO:0000786 ... P68431 38519511
    816983 8gui:B (2.81) BS01 dna ? GO:0000781 ... P62805 38519511
    816984 8gui:B (2.81) BS02 dna ? GO:0000781 ... P62805 38519511
    816985 8gui:C (2.81) BS01 dna ? GO:0000786 ... P0C0S8 38519511
    816986 8gui:C (2.81) BS02 dna ? GO:0000786 ... P0C0S8 38519511
    816987 8gui:D (2.81) BS01 dna ? GO:0000786 ... P06899 38519511
    816988 8gui:D (2.81) BS02 dna ? GO:0000786 ... P06899 38519511
    816989 8gui:E (2.81) BS01 dna ? GO:0000786 ... P68431 38519511
    816990 8gui:E (2.81) BS02 dna ? GO:0000786 ... P68431 38519511
    816991 8gui:F (2.81) BS01 dna ? GO:0000781 ... P62805 38519511
    816992 8gui:F (2.81) BS02 dna ? GO:0000781 ... P62805 38519511
    816993 8gui:G (2.81) BS01 dna ? GO:0000786 ... P0C0S8 38519511
    816994 8gui:G (2.81) BS02 dna ? GO:0000786 ... P0C0S8 38519511
    816995 8gui:H (2.81) BS01 dna ? GO:0000786 ... P06899 38519511
    816996 8gui:H (2.81) BS02 dna ? GO:0000786 ... P06899 38519511
    816997 8gui:K (2.81) BS01 ZN 2.3.2.27 GO:0000151 ... Q5VTR2 38519511
    816998 8gui:K (2.81) BS02 ZN 2.3.2.27 GO:0000151 ... Q5VTR2 38519511
    816999 8gui:L (2.81) BS01 ZN 2.3.2.27 GO:0000151 ... O75150 38519511
    817000 8gui:L (2.81) BS02 ZN 2.3.2.27 GO:0000151 ... O75150 38519511

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).