SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    817801 8g7s:h (3.1) BS01 rna N/A GO:0000028 ... P0A7W7 38538914
    817802 8g7s:i (3.1) BS01 rna N/A GO:0002181 ... P0A7X3 38538914
    817803 8g7s:j (3.1) BS01 rna N/A GO:0000049 ... P0A7R5 38538914
    817804 8g7s:k (3.1) BS01 rna ? GO:0002181 ... P0A7R9 38538914
    817805 8g7s:l (3.1) BS01 rna ? GO:0000049 ... P0A7S3 38538914
    817806 8g7s:m (3.1) BS01 rna ? GO:0000049 ... P0A7S9 38538914
    817807 8g7s:m (3.1) BS02 rna ? GO:0000049 ... P0A7S9 38538914
    817808 8g7s:n (3.1) BS01 rna N/A GO:0000028 ... P0AG59 38538914
    817809 8g7s:o (3.1) BS01 rna N/A GO:0000028 ... P0ADZ4 38538914
    817810 8g7s:o (3.1) BS02 rna N/A GO:0000028 ... P0ADZ4 38538914
    817811 8g7s:p (3.1) BS01 rna ? GO:0000028 ... P0A7T3 38538914
    817812 8g7s:q (3.1) BS01 rna N/A GO:0000028 ... P0AG63 38538914
    817813 8g7s:r (3.1) BS01 rna ? GO:0002181 ... P0A7T7 38538914
    817814 8g7s:s (3.1) BS01 rna N/A GO:0002181 ... P0A7U3 38538914
    817815 8g7s:t (3.1) BS01 rna ? GO:0000028 ... P0A7U7 38538914
    817816 8g7s:u (3.1) BS01 rna ? GO:0000028 ... P68679 38538914
    817817 8g7t:A (3.2) BS01 rna 3.6.4.13 GO:0002230 ... O95786 37951994
    817818 8g7t:A (3.2) BS02 rna 3.6.4.13 GO:0002230 ... O95786 37951994
    817819 8g7t:A (3.2) BS03 ZN 3.6.4.13 GO:0002230 ... O95786 37951994
    817820 8g7t:C (3.2) BS01 rna 3.6.4.13 GO:0002230 ... O95786 37951994
    817821 8g7t:C (3.2) BS02 rna 3.6.4.13 GO:0002230 ... O95786 37951994
    817822 8g7t:C (3.2) BS03 ZN 3.6.4.13 GO:0002230 ... O95786 37951994
    817823 8g7u:A (4.0) BS01 rna 3.6.4.13 GO:0002230 ... O95786 37951994
    817824 8g7u:A (4.0) BS02 rna 3.6.4.13 GO:0002230 ... O95786 37951994
    817825 8g7u:C (4.0) BS01 rna 3.6.4.13 GO:0002230 ... O95786 37951994
    817826 8g7u:C (4.0) BS02 rna 3.6.4.13 GO:0002230 ... O95786 37951994
    817827 8g7u:C (4.0) BS03 ZN 3.6.4.13 GO:0002230 ... O95786 37951994
    817828 8g7v:A (3.9) BS01 rna 3.6.4.13 GO:0002230 ... O95786 37951994
    817829 8g7v:A (3.9) BS02 rna 3.6.4.13 GO:0002230 ... O95786 37951994
    817830 8g7v:C (3.9) BS01 rna 3.6.4.13 GO:0002230 ... O95786 37951994
    817831 8g7v:C (3.9) BS02 rna 3.6.4.13 GO:0002230 ... O95786 37951994
    817832 8g7v:C (3.9) BS03 ZN 3.6.4.13 GO:0002230 ... O95786 37951994
    817833 8g7w:A (3.4) BS01 NAP ? GO:0008270 ... A0A1Z1MZ77 37348494
    817834 8g7w:A (3.4) BS02 NAP ? GO:0008270 ... A0A1Z1MZ77 37348494
    817835 8g7w:B (3.4) BS01 NAP ? GO:0008270 ... A0A1Z1MZ77 37348494
    817836 8g7y:C (3.92) BS01 CA N/A N/A E0CZA5 N/A
    817837 8g7z:C (3.22) BS01 CA N/A N/A E0CZA5 N/A
    817838 8g7z:D (3.22) BS01 CA N/A N/A E0CZA5 N/A
    817839 8g80:C (3.25) BS01 CA N/A N/A E0CZA5 N/A
    817840 8g80:D (3.25) BS01 CA N/A N/A E0CZA5 N/A
    817841 8g81:C (3.22) BS01 CA N/A N/A E0CZA5 N/A
    817842 8g81:D (3.22) BS01 CA N/A N/A E0CZA5 N/A
    817843 8g84:A (2.467) BS01 NAD ? GO:0004303 ... A0A8I3RYU0 37620305
    817844 8g84:B (2.467) BS01 NAD ? GO:0004303 ... A0A8I3RYU0 37620305
    817845 8g86:A (2.3) BS01 dna ? GO:0000786 ... P84233 37225990
    817846 8g86:A (2.3) BS02 dna ? GO:0000786 ... P84233 37225990
    817847 8g86:B (2.3) BS01 dna ? GO:0000786 ... P62799 37225990
    817848 8g86:B (2.3) BS02 dna ? GO:0000786 ... P62799 37225990
    817849 8g86:C (2.3) BS01 dna ? GO:0000786 ... Q6AZJ8 37225990
    817850 8g86:C (2.3) BS02 dna ? GO:0000786 ... Q6AZJ8 37225990
    817851 8g86:D (2.3) BS01 dna ? GO:0000786 ... P02281 37225990
    817852 8g86:D (2.3) BS02 dna ? GO:0000786 ... P02281 37225990
    817853 8g86:E (2.3) BS01 dna ? GO:0000786 ... P84233 37225990
    817854 8g86:E (2.3) BS02 dna ? GO:0000786 ... P84233 37225990
    817855 8g86:F (2.3) BS01 dna ? GO:0000786 ... P62799 37225990
    817856 8g86:F (2.3) BS02 dna ? GO:0000786 ... P62799 37225990
    817857 8g86:G (2.3) BS01 dna ? GO:0000786 ... Q6AZJ8 37225990
    817858 8g86:G (2.3) BS02 dna ? GO:0000786 ... Q6AZJ8 37225990
    817859 8g86:H (2.3) BS01 dna ? GO:0000786 ... P02281 37225990
    817860 8g86:H (2.3) BS02 dna ? GO:0000786 ... P02281 37225990
    817861 8g87:X (8.1) BS01 dna ? GO:0000122 ... Q01860 37225990
    817862 8g87:X (8.1) BS02 dna ? GO:0000122 ... Q01860 37225990
    817863 8g88:A (2.3) BS01 dna ? GO:0000786 ... P84233 37225990
    817864 8g88:A (2.3) BS02 dna ? GO:0000786 ... P84233 37225990
    817865 8g88:B (2.3) BS01 dna ? GO:0000786 ... P62799 37225990
    817866 8g88:B (2.3) BS02 dna ? GO:0000786 ... P62799 37225990
    817867 8g88:C (2.3) BS01 dna ? GO:0000786 ... Q6AZJ8 37225990
    817868 8g88:C (2.3) BS02 dna ? GO:0000786 ... Q6AZJ8 37225990
    817869 8g88:D (2.3) BS01 dna ? GO:0000786 ... P02281 37225990
    817870 8g88:D (2.3) BS02 dna ? GO:0000786 ... P02281 37225990
    817871 8g88:E (2.3) BS01 dna ? GO:0000786 ... P84233 37225990
    817872 8g88:E (2.3) BS02 dna ? GO:0000786 ... P84233 37225990
    817873 8g88:F (2.3) BS01 dna ? GO:0000786 ... P62799 37225990
    817874 8g88:F (2.3) BS02 dna ? GO:0000786 ... P62799 37225990
    817875 8g88:G (2.3) BS01 dna ? GO:0000786 ... Q6AZJ8 37225990
    817876 8g88:G (2.3) BS02 dna ? GO:0000786 ... Q6AZJ8 37225990
    817877 8g88:H (2.3) BS01 dna ? GO:0000786 ... P02281 37225990
    817878 8g88:H (2.3) BS02 dna ? GO:0000786 ... P02281 37225990
    817879 8g88:X (2.3) BS01 dna ? GO:0000122 ... Q01860 37225990
    817880 8g88:X (2.3) BS02 dna ? GO:0000122 ... Q01860 37225990
    817881 8g89:A (2.222) BS01 NAD ? GO:0004303 ... A0A8I3RYU0 37620305
    817882 8g89:A (2.222) BS02 YXW ? GO:0004303 ... A0A8I3RYU0 37620305
    817883 8g89:B (2.222) BS01 NAD ? GO:0004303 ... A0A8I3RYU0 37620305
    817884 8g8a:A (2.44) BS01 peptide N/A N/A N/A 38761800
    817885 8g8a:H (2.44) BS01 peptide N/A N/A N/A 38761800
    817886 8g8a:L (2.44) BS01 peptide N/A N/A N/A 38761800
    817887 8g8b:A (4.3) BS01 dna ? GO:0000786 ... P84233 37225990
    817888 8g8b:A (4.3) BS02 dna ? GO:0000786 ... P84233 37225990
    817889 8g8b:B (4.3) BS01 dna ? GO:0000786 ... P62799 37225990
    817890 8g8b:B (4.3) BS02 dna ? GO:0000786 ... P62799 37225990
    817891 8g8b:C (4.3) BS01 dna ? GO:0000786 ... Q6AZJ8 37225990
    817892 8g8b:C (4.3) BS02 dna ? GO:0000786 ... Q6AZJ8 37225990
    817893 8g8b:D (4.3) BS01 dna ? GO:0000786 ... P02281 37225990
    817894 8g8b:D (4.3) BS02 dna ? GO:0000786 ... P02281 37225990
    817895 8g8b:E (4.3) BS01 dna ? GO:0000786 ... P84233 37225990
    817896 8g8b:E (4.3) BS02 dna ? GO:0000786 ... P84233 37225990
    817897 8g8b:F (4.3) BS01 dna ? GO:0000786 ... P62799 37225990
    817898 8g8b:F (4.3) BS02 dna ? GO:0000786 ... P62799 37225990
    817899 8g8b:G (4.3) BS01 dna ? GO:0000786 ... Q6AZJ8 37225990
    817900 8g8b:G (4.3) BS02 dna ? GO:0000786 ... Q6AZJ8 37225990
    817901 8g8b:H (4.3) BS01 dna ? GO:0000786 ... P02281 37225990
    817902 8g8b:H (4.3) BS02 dna ? GO:0000786 ... P02281 37225990
    817903 8g8b:X (4.3) BS01 dna ? GO:0000122 ... Q01860 37225990
    817904 8g8b:X (4.3) BS02 dna ? GO:0000122 ... Q01860 37225990
    817905 8g8c:A (2.08) BS01 peptide N/A N/A N/A 38761800
    817906 8g8c:B (2.08) BS01 peptide N/A N/A N/A 38761800
    817907 8g8c:H (2.08) BS01 peptide N/A N/A N/A 38761800
    817908 8g8c:L (2.08) BS01 peptide N/A N/A N/A 38761800
    817909 8g8d:A (2.02) BS01 peptide N/A N/A P0DOX5 38761800
    817910 8g8d:B (2.02) BS01 peptide N/A N/A N/A 38761800
    817911 8g8d:H (2.02) BS01 peptide N/A N/A P0DOX5 38761800
    817912 8g8d:L (2.02) BS01 peptide N/A N/A N/A 38761800
    817913 8g8e:X (3.9) BS01 dna ? GO:0000122 ... Q01860 37225990
    817914 8g8e:X (3.9) BS02 dna ? GO:0000122 ... Q01860 37225990
    817915 8g8f:A (2.6) BS01 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    817916 8g8f:A (2.6) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    817917 8g8f:A (2.6) BS03 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    817918 8g8f:A (2.6) BS04 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    817919 8g8f:B (2.6) BS01 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    817920 8g8f:B (2.6) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    817921 8g8f:B (2.6) BS03 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    817922 8g8f:B (2.6) BS04 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    817923 8g8f:C (2.6) BS01 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    817924 8g8f:C (2.6) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    817925 8g8f:C (2.6) BS03 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    817926 8g8f:C (2.6) BS04 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    817927 8g8f:D (2.6) BS01 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    817928 8g8f:D (2.6) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    817929 8g8f:D (2.6) BS03 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    817930 8g8f:D (2.6) BS04 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    817931 8g8f:E (2.6) BS01 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    817932 8g8f:E (2.6) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    817933 8g8f:E (2.6) BS03 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    817934 8g8f:E (2.6) BS04 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    817935 8g8f:F (2.6) BS01 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    817936 8g8f:F (2.6) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    817937 8g8f:F (2.6) BS03 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    817938 8g8f:F (2.6) BS04 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    817939 8g8f:G (2.6) BS01 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    817940 8g8f:G (2.6) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    817941 8g8f:G (2.6) BS03 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    817942 8g8f:G (2.6) BS04 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    817943 8g8f:H (2.6) BS01 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    817944 8g8f:H (2.6) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    817945 8g8f:H (2.6) BS03 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    817946 8g8f:H (2.6) BS04 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    817947 8g8g:A (3.2) BS01 dna ? GO:0000786 ... P84233 37225990
    817948 8g8g:A (3.2) BS02 dna ? GO:0000786 ... P84233 37225990
    817949 8g8g:B (3.2) BS01 dna ? GO:0000786 ... P62799 37225990
    817950 8g8g:B (3.2) BS02 dna ? GO:0000786 ... P62799 37225990
    817951 8g8g:C (3.2) BS01 dna ? GO:0000786 ... Q6AZJ8 37225990
    817952 8g8g:C (3.2) BS02 dna ? GO:0000786 ... Q6AZJ8 37225990
    817953 8g8g:D (3.2) BS01 dna ? GO:0000786 ... P02281 37225990
    817954 8g8g:D (3.2) BS02 dna ? GO:0000786 ... P02281 37225990
    817955 8g8g:E (3.2) BS01 dna ? GO:0000786 ... P84233 37225990
    817956 8g8g:E (3.2) BS02 dna ? GO:0000786 ... P84233 37225990
    817957 8g8g:F (3.2) BS01 dna ? GO:0000786 ... P62799 37225990
    817958 8g8g:F (3.2) BS02 dna ? GO:0000786 ... P62799 37225990
    817959 8g8g:G (3.2) BS01 dna ? GO:0000786 ... Q6AZJ8 37225990
    817960 8g8g:G (3.2) BS02 dna ? GO:0000786 ... Q6AZJ8 37225990
    817961 8g8g:H (3.2) BS01 dna ? GO:0000786 ... P02281 37225990
    817962 8g8g:H (3.2) BS02 dna ? GO:0000786 ... P02281 37225990
    817963 8g8g:X (3.2) BS01 dna ? GO:0000122 ... Q01860 37225990
    817964 8g8g:X (3.2) BS02 dna ? GO:0000122 ... Q01860 37225990
    817965 8g8h:A (1.64) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    817966 8g8h:A (1.64) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    817967 8g8h:A (1.64) BS03 CZU 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    817968 8g8h:A (1.64) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    817969 8g8j:A (1.74) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    817970 8g8j:A (1.74) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    817971 8g8j:A (1.74) BS03 CZU 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    817972 8g8j:A (1.74) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    817973 8g8n:A (3.0) BS01 peptide N/A N/A N/A 38164757
    817974 8g8n:D (3.0) BS01 peptide N/A N/A N/A 38164757
    817975 8g8n:E (3.0) BS01 peptide N/A N/A N/A 38164757
    817976 8g8n:E (3.0) BS02 peptide N/A N/A N/A 38164757
    817977 8g8n:G (3.0) BS01 peptide N/A N/A N/A 38164757
    817978 8g8n:H (3.0) BS01 peptide N/A N/A N/A 38164757
    817979 8g8n:I (3.0) BS01 peptide N/A N/A N/A 38164757
    817980 8g8n:K (3.0) BS01 peptide N/A N/A N/A 38164757
    817981 8g8n:L (3.0) BS01 peptide N/A N/A N/A 38164757
    817982 8g8n:O (3.0) BS01 peptide N/A N/A N/A 38164757
    817983 8g8n:Q (3.0) BS01 peptide N/A N/A N/A 38164757
    817984 8g8o:A (2.2) BS01 YT0 2.7.10.2 GO:0004672 ... O60674 37314941
    817985 8g8o:B (2.2) BS01 YT0 2.7.10.2 GO:0004672 ... O60674 37314941
    817986 8g8p:AAA (1.83) BS01 F42 6.3.2.31
    6.3.2.34
    GO:0043773 ... O28028 38346985
    817987 8g8p:AAA (1.83) BS02 GTP 6.3.2.31
    6.3.2.34
    GO:0043773 ... O28028 38346985
    817988 8g8p:AAA (1.83) BS03 GDP 6.3.2.31
    6.3.2.34
    GO:0043773 ... O28028 38346985
    817989 8g8p:AAA (1.83) BS04 MN 6.3.2.31
    6.3.2.34
    GO:0043773 ... O28028 38346985
    817990 8g8p:AAA (1.83) BS05 MN 6.3.2.31
    6.3.2.34
    GO:0043773 ... O28028 38346985
    817991 8g8p:AAA (1.83) BS06 MN 6.3.2.31
    6.3.2.34
    GO:0043773 ... O28028 38346985
    817992 8g8q:A (2.6) BS01 peptide ? GO:0005737 ... P52293 N/A
    817993 8g8q:A (2.6) BS02 peptide ? GO:0005737 ... P52293 N/A
    817994 8g8r:A (2.6) BS01 peptide ? GO:0005737 ... P52293 N/A
    817995 8g8s:A (2.1) BS01 peptide ? GO:0005737 ... P52293 N/A
    817996 8g8v:A (2.03) BS01 SO3 3.5.4.16 GO:0003933 ... Q63JF5 39495920
    817997 8g8v:A (2.03) BS02 SO3 3.5.4.16 GO:0003933 ... Q63JF5 39495920
    817998 8g8v:B (2.03) BS01 SO3 3.5.4.16 GO:0003933 ... Q63JF5 39495920
    817999 8g8v:B (2.03) BS02 SO3 3.5.4.16 GO:0003933 ... Q63JF5 39495920
    818000 8g8v:B (2.03) BS03 SO3 3.5.4.16 GO:0003933 ... Q63JF5 39495920

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).