SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    818001 8h0v:b (3.8) BS02 dna ? GO:0000781 ... P62805 36435862
    818002 8h0v:c (3.8) BS01 dna ? GO:0000786 ... P04908 36435862
    818003 8h0v:c (3.8) BS02 dna ? GO:0000786 ... P04908 36435862
    818004 8h0v:d (3.8) BS01 dna ? GO:0000786 ... P06899 36435862
    818005 8h0v:d (3.8) BS02 dna ? GO:0000786 ... P06899 36435862
    818006 8h0v:e (3.8) BS01 dna ? GO:0000786 ... P68431 36435862
    818007 8h0v:e (3.8) BS02 dna ? GO:0000786 ... P68431 36435862
    818008 8h0v:f (3.8) BS01 dna ? GO:0000781 ... P62805 36435862
    818009 8h0v:f (3.8) BS02 dna ? GO:0000781 ... P62805 36435862
    818010 8h0v:g (3.8) BS01 dna ? GO:0000786 ... P04908 36435862
    818011 8h0v:g (3.8) BS02 dna ? GO:0000786 ... P04908 36435862
    818012 8h0v:h (3.8) BS01 dna ? GO:0000786 ... P06899 36435862
    818013 8h0v:h (3.8) BS02 dna ? GO:0000786 ... P06899 36435862
    818014 8h0v:u (3.8) BS01 dna ? GO:0000122 ... P16403 36435862
    818015 8h0w:A (4.6) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 36435862
    818016 8h0w:A (4.6) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 36435862
    818017 8h0w:A (4.6) BS03 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 36435862
    818018 8h0w:A (4.6) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 36435862
    818019 8h0w:A (4.6) BS05 MG 2.7.7.6 GO:0000428 ... C4R4Y0 36435862
    818020 8h0w:B (4.6) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 36435862
    818021 8h0w:B (4.6) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 36435862
    818022 8h0w:B (4.6) BS03 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 36435862
    818023 8h0w:C (4.6) BS01 ZN ? GO:0000428 ... C4R7L2 36435862
    818024 8h0w:E (4.6) BS01 dna ? GO:0001054 ... C4R3P8 36435862
    818025 8h0w:I (4.6) BS01 ZN ? GO:0000428 ... F2QPE6 36435862
    818026 8h0w:I (4.6) BS02 ZN ? GO:0000428 ... F2QPE6 36435862
    818027 8h0w:J (4.6) BS01 ZN ? GO:0000428 ... C4R009 36435862
    818028 8h0w:L (4.6) BS01 ZN ? GO:0001054 ... F2QMI1 36435862
    818029 8h0w:a (4.6) BS01 dna ? GO:0000786 ... P68431 36435862
    818030 8h0w:a (4.6) BS02 dna ? GO:0000786 ... P68431 36435862
    818031 8h0w:b (4.6) BS01 dna ? GO:0000781 ... P62805 36435862
    818032 8h0w:b (4.6) BS02 dna ? GO:0000781 ... P62805 36435862
    818033 8h0w:c (4.6) BS01 dna ? GO:0000786 ... P04908 36435862
    818034 8h0w:c (4.6) BS02 dna ? GO:0000786 ... P04908 36435862
    818035 8h0w:d (4.6) BS01 dna ? GO:0000786 ... P06899 36435862
    818036 8h0w:d (4.6) BS02 dna ? GO:0000786 ... P06899 36435862
    818037 8h0w:e (4.6) BS01 dna ? GO:0000786 ... P68431 36435862
    818038 8h0w:e (4.6) BS02 dna ? GO:0000786 ... P68431 36435862
    818039 8h0w:f (4.6) BS01 dna ? GO:0000781 ... P62805 36435862
    818040 8h0w:f (4.6) BS02 dna ? GO:0000781 ... P62805 36435862
    818041 8h0w:g (4.6) BS01 dna ? GO:0000786 ... P04908 36435862
    818042 8h0w:g (4.6) BS02 dna ? GO:0000786 ... P04908 36435862
    818043 8h0w:h (4.6) BS01 dna ? GO:0000786 ... P06899 36435862
    818044 8h0w:h (4.6) BS02 dna ? GO:0000786 ... P06899 36435862
    818045 8h0w:u (4.6) BS01 dna ? GO:0000122 ... P16403 36435862
    818046 8h0x:A (2.57) BS01 EIC ? GO:0005515 ... P59594 37402591
    818047 8h0x:A (2.57) BS02 BLA ? GO:0005515 ... P59594 37402591
    818048 8h0x:B (2.57) BS01 EIC ? GO:0005515 ... P59594 37402591
    818049 8h0x:B (2.57) BS02 BLA ? GO:0005515 ... P59594 37402591
    818050 8h0x:C (2.57) BS01 EIC ? GO:0005515 ... P59594 37402591
    818051 8h0x:C (2.57) BS02 BLA ? GO:0005515 ... P59594 37402591
    818052 8h0y:A (2.85) BS01 EIC ? GO:0005515 ... P59594 37402591
    818053 8h0y:A (2.85) BS02 BLA ? GO:0005515 ... P59594 37402591
    818054 8h0y:B (2.85) BS01 EIC ? GO:0005515 ... P59594 37402591
    818055 8h0y:B (2.85) BS02 BLA ? GO:0005515 ... P59594 37402591
    818056 8h0y:C (2.85) BS01 EIC ? GO:0005515 ... P59594 37402591
    818057 8h0y:C (2.85) BS02 BLA ? GO:0005515 ... P59594 37402591
    818058 8h0z:A (2.99) BS01 EIC ? GO:0005515 ... P59594 37402591
    818059 8h0z:A (2.99) BS02 BLA ? GO:0005515 ... P59594 37402591
    818060 8h0z:B (2.99) BS01 BLA ? GO:0005515 ... P59594 37402591
    818061 8h0z:B (2.99) BS02 EIC ? GO:0005515 ... P59594 37402591
    818062 8h0z:C (2.99) BS01 EIC ? GO:0005515 ... P59594 37402591
    818063 8h0z:C (2.99) BS02 BLA ? GO:0005515 ... P59594 37402591
    818064 8h10:A (2.99) BS01 BLA ? GO:0005515 ... P59594 37402591
    818065 8h10:A (2.99) BS02 EIC ? GO:0005515 ... P59594 37402591
    818066 8h10:B (2.99) BS01 EIC ? GO:0005515 ... P59594 37402591
    818067 8h10:B (2.99) BS02 BLA ? GO:0005515 ... P59594 37402591
    818068 8h10:C (2.99) BS01 EIC ? GO:0005515 ... P59594 37402591
    818069 8h10:C (2.99) BS02 BLA ? GO:0005515 ... P59594 37402591
    818070 8h14:A (3.39) BS01 EIC ? GO:0005515 ... P59594 37402591
    818071 8h14:B (3.39) BS01 EIC ? GO:0005515 ... P59594 37402591
    818072 8h14:C (3.39) BS01 EIC ? GO:0005515 ... P59594 37402591
    818073 8h17:A (2.15) BS01 IMD ? GO:0019825 ... Q8DHH0 37076076
    818074 8h17:A (2.15) BS02 HEM ? GO:0019825 ... Q8DHH0 37076076
    818075 8h18:A (1.499) BS01 MG N/A GO:0003676 ... N/A 37663930
    818076 8h1b:A (1.55) BS01 rna 2.1.1.61 GO:0008033 ... Q2FXG9 36762482
    818077 8h1b:A (1.55) BS02 SAM 2.1.1.61 GO:0008033 ... Q2FXG9 36762482
    818078 8h1b:B (1.55) BS01 rna 2.1.1.61 GO:0008033 ... Q2FXG9 36762482
    818079 8h1b:B (1.55) BS02 SAM 2.1.1.61 GO:0008033 ... Q2FXG9 36762482
    818080 8h1c:A (4.5) BS01 rna 6.1.1.14 GO:0000166 ... Q0DFB6 36912079
    818081 8h1c:B (4.5) BS01 rna 6.1.1.14 GO:0000166 ... Q0DFB6 36912079
    818082 8h1e:A (1.22) BS01 MN ? GO:0005524 ... O67518 37487639
    818083 8h1e:A (1.22) BS02 MN ? GO:0005524 ... O67518 37487639
    818084 8h1e:A (1.22) BS03 MN ? GO:0005524 ... O67518 37487639
    818085 8h1f:A (1.22) BS01 ZN ? GO:0005524 ... O67518 37487639
    818086 8h1f:A (1.22) BS02 ZN ? GO:0005524 ... O67518 37487639
    818087 8h1g:A (1.43) BS01 CD ? GO:0005524 ... O67518 37487639
    818088 8h1g:A (1.43) BS02 CD ? GO:0005524 ... O67518 37487639
    818089 8h1i:A (2.1) BS01 CA ? GO:0001897 ... W6EBY7 N/A
    818090 8h1j:A (3.1) BS01 dna 3.1.21.- GO:0003677 ... Q7DF80 37020030
    818091 8h1j:A (3.1) BS02 rna 3.1.21.- GO:0003677 ... Q7DF80 37020030
    818092 8h1j:A (3.1) BS03 dna 3.1.21.- GO:0003677 ... Q7DF80 37020030
    818093 8h1j:A (3.1) BS04 ZN 3.1.21.- GO:0003677 ... Q7DF80 37020030
    818094 8h1l:B (2.33) BS01 SOR ? GO:0005975 ... A0A7U4E834 37314406
    818095 8h1l:C (2.33) BS01 SOR ? GO:0005975 ... A0A7U4E834 37314406
    818096 8h1n:A (2.67) BS01 SOR ? GO:0005975 ... A0A7U4E834 37314406
    818097 8h1o:A (2.67) BS01 GDP ? GO:0000917 ... W9BCK7 37429870
    818098 8h1q:A (1.5) BS01 PLS 2.3.1.50 GO:0004758 ... A7BFV6 37030501
    818099 8h1r:A (2.98) BS01 peptide ? GO:0009279 ... Q9I5U2 N/A
    818100 8h1r:A (2.98) BS02 PCJ ? GO:0009279 ... Q9I5U2 N/A
    818101 8h1r:D (2.98) BS01 peptide ? GO:0009279 ... Q9I5U2 N/A
    818102 8h1r:D (2.98) BS02 PCJ ? GO:0009279 ... Q9I5U2 N/A
    818103 8h1t:A (3.0) BS01 dna ? GO:0000786 ... P68431 36991118
    818104 8h1t:A (3.0) BS02 dna ? GO:0000786 ... P68431 36991118
    818105 8h1t:B (3.0) BS01 dna ? GO:0000781 ... P62805 36991118
    818106 8h1t:B (3.0) BS02 dna ? GO:0000781 ... P62805 36991118
    818107 8h1t:C (3.0) BS01 dna ? GO:0000786 ... P20671 36991118
    818108 8h1t:C (3.0) BS02 dna ? GO:0000786 ... P20671 36991118
    818109 8h1t:D (3.0) BS01 dna ? GO:0000786 ... Q16778 36991118
    818110 8h1t:D (3.0) BS02 dna ? GO:0000786 ... Q16778 36991118
    818111 8h1t:E (3.0) BS01 dna ? GO:0000786 ... P68431 36991118
    818112 8h1t:E (3.0) BS02 dna ? GO:0000786 ... P68431 36991118
    818113 8h1t:F (3.0) BS01 dna ? GO:0000781 ... P62805 36991118
    818114 8h1t:F (3.0) BS02 dna ? GO:0000781 ... P62805 36991118
    818115 8h1t:G (3.0) BS01 dna ? GO:0000786 ... P20671 36991118
    818116 8h1t:G (3.0) BS02 dna ? GO:0000786 ... P20671 36991118
    818117 8h1t:H (3.0) BS01 dna ? GO:0000786 ... Q16778 36991118
    818118 8h1t:H (3.0) BS02 dna ? GO:0000786 ... Q16778 36991118
    818119 8h1t:K (3.0) BS01 dna ? GO:0000122 ... P10412 36991118
    818120 8h1t:K (3.0) BS02 dna ? GO:0000122 ... P10412 36991118
    818121 8h1t:L (3.0) BS01 dna 3.4.19.12 GO:0000278 ... Q92560 36991118
    818122 8h1t:L (3.0) BS02 dna 3.4.19.12 GO:0000278 ... Q92560 36991118
    818123 8h1y:A (1.55) BS01 KPU 2.3.1.50 GO:0004758 ... A7BFV6 37030501
    818124 8h20:A (1.45) BS01 PLG 2.3.1.50 GO:0004758 ... A7BFV6 37030501
    818125 8h21:A (1.54) BS01 PDA 2.3.1.50 GO:0004758 ... A7BFV6 37030501
    818126 8h26:A (1.5) BS01 SAH 2.1.1.61 GO:0008033 ... Q2FXG9 N/A
    818127 8h26:B (1.5) BS01 SAH 2.1.1.61 GO:0008033 ... Q2FXG9 N/A
    818128 8h26:C (1.5) BS01 SAH 2.1.1.61 GO:0008033 ... Q2FXG9 N/A
    818129 8h26:D (1.5) BS01 SAH 2.1.1.61 GO:0008033 ... Q2FXG9 N/A
    818130 8h27:B (2.04) BS01 SAM 2.1.1.61 GO:0008033 ... Q2FXG9 36762482
    818131 8h28:A (2.06) BS01 HEC ? GO:0005506 ... A0A2Z6I6U9 37758155
    818132 8h28:B (2.06) BS01 HEC ? GO:0005506 ... A0A2Z6I6U9 37758155
    818133 8h29:A (1.45) BS01 2BO 2.3.1.50 GO:0004758 ... A7BFV6 37030501
    818134 8h2a:A (2.5) BS01 NAD 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818135 8h2a:A (2.5) BS02 ZN 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818136 8h2a:A (2.5) BS03 ZN 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818137 8h2a:B (2.5) BS01 NAD 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818138 8h2a:B (2.5) BS02 ZN 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818139 8h2a:B (2.5) BS03 ZN 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818140 8h2a:C (2.5) BS01 NAD 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818141 8h2a:C (2.5) BS02 ZN 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818142 8h2a:C (2.5) BS03 ZN 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818143 8h2a:D (2.5) BS01 NAD 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818144 8h2a:D (2.5) BS02 ZN 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818145 8h2a:D (2.5) BS03 ZN 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818146 8h2a:E (2.5) BS01 NAD 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818147 8h2a:E (2.5) BS02 ZN 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818148 8h2a:E (2.5) BS03 ZN 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818149 8h2a:F (2.5) BS01 NAD 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818150 8h2a:F (2.5) BS02 ZN 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818151 8h2a:F (2.5) BS03 ZN 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818152 8h2a:G (2.5) BS01 NAD 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818153 8h2a:G (2.5) BS02 ZN 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818154 8h2a:G (2.5) BS03 ZN 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818155 8h2a:H (2.5) BS01 NAD 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818156 8h2a:H (2.5) BS02 ZN 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818157 8h2a:H (2.5) BS03 ZN 1.1.1.1 GO:0000166 ... T2KM87 N/A
    818158 8h2b:A (2.1) BS01 NAD 1.1.1.1 GO:0000166 ... G0L712 N/A
    818159 8h2b:A (2.1) BS02 ZN 1.1.1.1 GO:0000166 ... G0L712 N/A
    818160 8h2b:A (2.1) BS03 ZN 1.1.1.1 GO:0000166 ... G0L712 N/A
    818161 8h2b:B (2.1) BS01 NAD 1.1.1.1 GO:0000166 ... G0L712 N/A
    818162 8h2b:B (2.1) BS02 ZN 1.1.1.1 GO:0000166 ... G0L712 N/A
    818163 8h2b:B (2.1) BS03 ZN 1.1.1.1 GO:0000166 ... G0L712 N/A
    818164 8h2b:C (2.1) BS01 NAD 1.1.1.1 GO:0000166 ... G0L712 N/A
    818165 8h2b:C (2.1) BS02 ZN 1.1.1.1 GO:0000166 ... G0L712 N/A
    818166 8h2b:C (2.1) BS03 ZN 1.1.1.1 GO:0000166 ... G0L712 N/A
    818167 8h2b:D (2.1) BS01 NAD 1.1.1.1 GO:0000166 ... G0L712 N/A
    818168 8h2b:D (2.1) BS02 ZN 1.1.1.1 GO:0000166 ... G0L712 N/A
    818169 8h2b:D (2.1) BS03 ZN 1.1.1.1 GO:0000166 ... G0L712 N/A
    818170 8h2c:A (2.9) BS01 MN 2.5.1.97 GO:0016051 ... Q0P8U0 36283338
    818171 8h2c:B (2.9) BS01 MN 2.5.1.97 GO:0016051 ... Q0P8U0 36283338
    818172 8h2c:C (2.9) BS01 MN 2.5.1.97 GO:0016051 ... Q0P8U0 36283338
    818173 8h2c:D (2.9) BS01 MN 2.5.1.97 GO:0016051 ... Q0P8U0 36283338
    818174 8h2f:A (1.448) BS01 TMP N/A GO:0003676 ... N/A 37663930
    818175 8h2f:A (1.448) BS02 MG N/A GO:0003676 ... N/A 37663930
    818176 8h2g:A (3.01) BS01 NIO ? GO:0001781 ... P0ABE7
    Q8TDS4
    N/A
    818177 8h2h:D (3.2) BS01 rna 2.7.7.49
    3.1.-.-
    GO:0003720 ... P0A3U0 36344519
    818178 8h2h:D (3.2) BS02 rna 2.7.7.49
    3.1.-.-
    GO:0003720 ... P0A3U0 36344519
    818179 8h2i:cX (3.8) BS01 peptide ? GO:0005198 ... Q89346 36309542
    818180 8h2i:cZ (3.8) BS01 peptide ? GO:0005198 ... Q89346 36309542
    818181 8h2i:da (3.8) BS01 peptide ? N/A Q89353 36309542
    818182 8h2i:db (3.8) BS01 peptide ? N/A Q89349 36309542
    818183 8h2i:dd (3.8) BS01 peptide ? GO:0005198 ... Q89346 36309542
    818184 8h2i:de (3.8) BS01 peptide ? GO:0005198 ... Q89345 36309542
    818185 8h2i:dg (3.8) BS01 peptide ? N/A Q89353 36309542
    818186 8h2i:dh (3.8) BS01 peptide ? N/A Q89349 36309542
    818187 8h2i:dk (3.8) BS01 peptide ? GO:0005198 ... Q89346 36309542
    818188 8h2i:dk (3.8) BS02 peptide ? GO:0005198 ... Q89346 36309542
    818189 8h2i:dl (3.8) BS01 peptide ? GO:0005198 ... Q89346 36309542
    818190 8h2j:A (2.4) BS01 4BW ? GO:0000166 ... A0A1C8HPQ3 36750095
    818191 8h2j:B (2.4) BS01 4BW ? GO:0000166 ... A0A1C8HPQ3 36750095
    818192 8h2j:C (2.4) BS01 4BW ? GO:0000166 ... A0A1C8HPQ3 36750095
    818193 8h2j:D (2.4) BS01 4BW ? GO:0000166 ... A0A1C8HPQ3 36750095
    818194 8h2j:E (2.4) BS01 4BW ? GO:0000166 ... A0A1C8HPQ3 36750095
    818195 8h2j:F (2.4) BS01 4BW ? GO:0000166 ... A0A1C8HPQ3 36750095
    818196 8h2n:A (4.41) BS01 MG ? N/A A7XXD0 38182597
    818197 8h2n:B (4.41) BS01 MG ? N/A A7XXD0 38182597
    818198 8h2n:C (4.41) BS01 MG ? N/A A7XXD0 38182597
    818199 8h2n:D (4.41) BS01 MG ? N/A A7XXD0 38182597
    818200 8h2t:B (2.59) BS01 FES ? GO:0005506 ... C5CSP6 37459330

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).