SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    818201 8gae:A (3.3) BS01 ADP ? GO:0003723 ... P08238 37069154
    818202 8gae:B (3.3) BS01 ATP ? GO:0003723 ... P08238 37069154
    818203 8gae:E (3.3) BS01 MN 3.1.3.16 GO:0000165 ... P53041 37069154
    818204 8gae:E (3.3) BS02 MN 3.1.3.16 GO:0000165 ... P53041 37069154
    818205 8gaf:A (3.64) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818206 8gaf:B (3.64) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818207 8gaf:C (3.64) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818208 8gaf:D (3.64) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818209 8gaf:E (3.64) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818210 8gaf:F (3.64) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818211 8gaf:G (3.64) BS01 rna ? N/A D0W8X5 38242128
    818212 8gaf:M (3.64) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818213 8gaf:N (3.64) BS01 rna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    818214 8gag:R (3.3) BS01 YVF ? GO:0004930 ... P21554 N/A
    818215 8gah:A (2.9) BS01 CL ? GO:0005247 ... P37019 38279055
    818216 8gah:A (2.9) BS02 CL ? GO:0005247 ... P37019 38279055
    818217 8gah:B (2.9) BS01 CL ? GO:0005247 ... P37019 38279055
    818218 8gai:A (2.65) BS01 peptide ? GO:0005737 ... H0VVB1 N/A
    818219 8gai:C (2.65) BS01 peptide ? GO:0005737 ... H0VVB1 N/A
    818220 8gaj:A (2.43) BS01 peptide ? GO:0001530 ... P0ADV1 37416832
    818221 8gaj:C (2.43) BS01 peptide ? GO:0001530 ... P0ADV1 37416832
    818222 8gak:A (1.9) BS01 peptide ? GO:0001530 ... P0ADV1 37416832
    818223 8gak:C (1.9) BS01 peptide ? GO:0001530 ... P0ADV1 37416832
    818224 8gal:A (1.8) BS01 peptide ? GO:0001530 ... P0ADV1 37416832
    818225 8gal:C (1.8) BS01 peptide ? GO:0001530 ... P0ADV1 37416832
    818226 8gam:A (3.46) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818227 8gam:B (3.46) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818228 8gam:B (3.46) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    818229 8gam:C (3.46) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818230 8gam:D (3.46) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818231 8gam:E (3.46) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818232 8gam:F (3.46) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818233 8gam:G (3.46) BS01 rna ? N/A D0W8X5 38242128
    818234 8gam:G (3.46) BS02 dna ? N/A D0W8X5 38242128
    818235 8gam:G (3.46) BS03 dna ? N/A D0W8X5 38242128
    818236 8gam:H (3.46) BS01 dna ? N/A D0W8X5 38242128
    818237 8gam:M (3.46) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818238 8gam:M (3.46) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    818239 8gam:N (3.46) BS01 rna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    818240 8gam:N (3.46) BS02 dna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    818241 8gam:N (3.46) BS03 dna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    818242 8gan:A (3.26) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818243 8gan:A (3.26) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    818244 8gan:B (3.26) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818245 8gan:B (3.26) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    818246 8gan:C (3.26) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818247 8gan:C (3.26) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    818248 8gan:D (3.26) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818249 8gan:D (3.26) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    818250 8gan:E (3.26) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818251 8gan:E (3.26) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    818252 8gan:F (3.26) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818253 8gan:F (3.26) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    818254 8gan:G (3.26) BS01 dna ? N/A D0W8X5 38242128
    818255 8gan:G (3.26) BS02 dna ? N/A D0W8X5 38242128
    818256 8gan:H (3.26) BS01 rna ? N/A D0W8X5 38242128
    818257 8gan:H (3.26) BS02 dna ? N/A D0W8X5 38242128
    818258 8gan:H (3.26) BS03 dna ? N/A D0W8X5 38242128
    818259 8gan:H (3.26) BS04 dna ? N/A D0W8X5 38242128
    818260 8gan:I (3.26) BS01 dna ? N/A D0W8X5 38242128
    818261 8gan:I (3.26) BS02 dna ? N/A D0W8X5 38242128
    818262 8gan:J (3.26) BS01 dna ? N/A D0W8X5 38242128
    818263 8gan:J (3.26) BS02 dna ? N/A D0W8X5 38242128
    818264 8gan:M (3.26) BS01 rna ? GO:0043571 ... D0W8X6 38242128
    818265 8gan:M (3.26) BS02 dna ? GO:0043571 ... D0W8X6 38242128
    818266 8gan:N (3.26) BS01 rna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    818267 8gan:N (3.26) BS02 dna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    818268 8gan:N (3.26) BS03 dna 3.1.-.- GO:0003723 ... D0W8X4 38242128
    818269 8gao:A (4.1) BS01 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    818270 8gao:B (4.1) BS01 dna 3.6.4.- GO:0000166 ... P04530 37474605
    818271 8gao:B (4.1) BS02 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    818272 8gao:B (4.1) BS03 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    818273 8gao:C (4.1) BS01 dna 3.6.4.- GO:0000166 ... P04530 37474605
    818274 8gao:C (4.1) BS02 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    818275 8gao:C (4.1) BS03 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    818276 8gao:D (4.1) BS01 dna 3.6.4.- GO:0000166 ... P04530 37474605
    818277 8gao:D (4.1) BS02 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    818278 8gao:D (4.1) BS03 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    818279 8gao:E (4.1) BS01 dna 3.6.4.- GO:0000166 ... P04530 37474605
    818280 8gao:E (4.1) BS02 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    818281 8gao:E (4.1) BS03 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    818282 8gao:F (4.1) BS01 dna 3.6.4.- GO:0000166 ... P04530 37474605
    818283 8gao:F (4.1) BS02 AGS 3.6.4.- GO:0000166 ... P04530 37474605
    818284 8gao:F (4.1) BS03 MG 3.6.4.- GO:0000166 ... P04530 37474605
    818285 8gao:G (4.1) BS01 rna 2.7.7.- GO:0003899 ... P04520 37474605
    818286 8gao:G (4.1) BS02 dna 2.7.7.- GO:0003899 ... P04520 37474605
    818287 8gao:G (4.1) BS03 ZN 2.7.7.- GO:0003899 ... P04520 37474605
    818288 8gap:A (3.8) BS01 dna 2.7.7.49 GO:0000333 ... O77448 37330293
    818289 8gap:A (3.8) BS02 rna 2.7.7.49 GO:0000333 ... O77448 37330293
    818290 8gap:D (3.8) BS01 dna ? GO:0000781 ... D2CVN6 37330293
    818291 8gap:D (3.8) BS02 ZN ? GO:0000781 ... D2CVN6 37330293
    818292 8gap:H (3.8) BS01 rna ? GO:0000781 ... W7X6T2 37330293
    818293 8gar:A (1.55) BS01 HEC ? N/A Q50927 37338957
    818294 8gb1:A (2.46) BS01 YWI 3.1.5.- N/A Q9Y3Z3 37233733
    818295 8gb1:A (2.46) BS02 FE 3.1.5.- N/A Q9Y3Z3 37233733
    818296 8gb1:A (2.46) BS03 YWI 3.1.5.- N/A Q9Y3Z3 37233733
    818297 8gb1:B (2.46) BS01 YWI 3.1.5.- N/A Q9Y3Z3 37233733
    818298 8gb1:B (2.46) BS02 YWI 3.1.5.- N/A Q9Y3Z3 37233733
    818299 8gb1:B (2.46) BS03 FE 3.1.5.- N/A Q9Y3Z3 37233733
    818300 8gb1:C (2.46) BS01 YWI 3.1.5.- N/A Q9Y3Z3 37233733
    818301 8gb1:C (2.46) BS02 FE 3.1.5.- N/A Q9Y3Z3 37233733
    818302 8gb1:C (2.46) BS03 YWI 3.1.5.- N/A Q9Y3Z3 37233733
    818303 8gb1:D (2.46) BS01 YWI 3.1.5.- N/A Q9Y3Z3 37233733
    818304 8gb1:D (2.46) BS02 YWI 3.1.5.- N/A Q9Y3Z3 37233733
    818305 8gb1:D (2.46) BS03 FE 3.1.5.- N/A Q9Y3Z3 37233733
    818306 8gb2:A (3.07) BS01 FE 3.1.5.- N/A Q9Y3Z3 37233733
    818307 8gb2:B (3.07) BS01 FE 3.1.5.- N/A Q9Y3Z3 37233733
    818308 8gb2:C (3.07) BS01 FE 3.1.5.- N/A Q9Y3Z3 37233733
    818309 8gb2:D (3.07) BS01 FE 3.1.5.- N/A Q9Y3Z3 37233733
    818310 8gb4:A (2.59) BS01 MG 2.7.10.1 GO:0004672 ... P00533 N/A
    818311 8gb4:A (2.59) BS02 ANP 2.7.10.1 GO:0004672 ... P00533 N/A
    818312 8gb4:A (2.59) BS03 YW5 2.7.10.1 GO:0004672 ... P00533 N/A
    818313 8gb4:B (2.59) BS01 MG 2.7.10.1 GO:0004672 ... P00533 N/A
    818314 8gb4:B (2.59) BS02 ANP 2.7.10.1 GO:0004672 ... P00533 N/A
    818315 8gb4:B (2.59) BS03 YW5 2.7.10.1 GO:0004672 ... P00533 N/A
    818316 8gb4:C (2.59) BS01 MG 2.7.10.1 GO:0004672 ... P00533 N/A
    818317 8gb4:C (2.59) BS02 ANP 2.7.10.1 GO:0004672 ... P00533 N/A
    818318 8gb4:C (2.59) BS03 YW5 2.7.10.1 GO:0004672 ... P00533 N/A
    818319 8gb4:D (2.59) BS01 MG 2.7.10.1 GO:0004672 ... P00533 N/A
    818320 8gb4:D (2.59) BS02 ANP 2.7.10.1 GO:0004672 ... P00533 N/A
    818321 8gb4:D (2.59) BS03 YW5 2.7.10.1 GO:0004672 ... P00533 N/A
    818322 8gbf:A (2.11) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    818323 8gbf:A (2.11) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    818324 8gbf:A (2.11) BS03 CZU 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    818325 8gbf:A (2.11) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    818326 8gbj:C (3.11) BS01 dna ? GO:0000400 ... O43502 37344589
    818327 8gbj:C (3.11) BS02 ANP ? GO:0000400 ... O43502 37344589
    818328 8gbj:C (3.11) BS03 ANP ? GO:0000400 ... O43502 37344589
    818329 8gbj:D (3.11) BS01 dna ? GO:0000400 ... O75771 37344589
    818330 8gbj:D (3.11) BS02 ANP ? GO:0000400 ... O75771 37344589
    818331 8gbj:D (3.11) BS03 ANP ? GO:0000400 ... O75771 37344589
    818332 8gbj:X (3.11) BS01 dna ? GO:0000278 ... O43543 37344589
    818333 8gbj:X (3.11) BS02 ANP ? GO:0000278 ... O43543 37344589
    818334 8gbk:A (2.9) BS01 HEB ? N/A P73129 38609367
    818335 8gbk:B (2.9) BS01 HEB ? N/A P73129 38609367
    818336 8gbk:C (2.9) BS01 HEB ? N/A P73129 38609367
    818337 8gbk:D (2.9) BS01 HEB ? N/A P73129 38609367
    818338 8gbk:E (2.9) BS01 HEB ? N/A P73129 38609367
    818339 8gbk:F (2.9) BS01 HEB ? N/A P73129 38609367
    818340 8gbk:G (2.9) BS01 HEB ? N/A P73129 38609367
    818341 8gbk:H (2.9) BS01 HEB ? N/A P73129 38609367
    818342 8gbl:A (2.24) BS01 ZN 2.3.1.- GO:0036054 ... Q9NXA8 38846003
    818343 8gbl:B (2.24) BS01 ZN 2.3.1.- GO:0036054 ... Q9NXA8 38846003
    818344 8gbn:A (2.7) BS01 ZN 2.3.1.- GO:0036054 ... Q9NXA8 38846003
    818345 8gbn:B (2.7) BS01 ZN 2.3.1.- GO:0036054 ... Q9NXA8 38846003
    818346 8gbq:B (1.74) BS01 ZN 2.3.2.27 N/A Q96EQ8 37541247
    818347 8gbq:B (1.74) BS02 ZN 2.3.2.27 N/A Q96EQ8 37541247
    818348 8gbq:B (1.74) BS03 ZN 2.3.2.27 N/A Q96EQ8 37541247
    818349 8gbt:A (2.8) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 37695261
    818350 8gbt:A (2.8) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 37695261
    818351 8gbt:A (2.8) BS03 CU 7.1.1.9 GO:0004129 ... P00396 37695261
    818352 8gbt:A (2.8) BS04 MG 7.1.1.9 GO:0004129 ... P00396 37695261
    818353 8gbt:B (2.8) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 37695261
    818354 8gbt:C (2.8) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 37695261
    818355 8gbt:F (2.8) BS01 ZN ? GO:0005740 ... P00428 37695261
    818356 8gbt:G (2.8) BS01 DMU ? GO:0005743 ... P07471 37695261
    818357 8gbt:M (2.8) BS01 DMU ? GO:0006123 ... P10175 37695261
    818358 8gbt:N (2.8) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 37695261
    818359 8gbt:N (2.8) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 37695261
    818360 8gbt:N (2.8) BS03 CU 7.1.1.9 GO:0004129 ... P00396 37695261
    818361 8gbt:N (2.8) BS04 MG 7.1.1.9 GO:0004129 ... P00396 37695261
    818362 8gbt:O (2.8) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 37695261
    818363 8gbt:O (2.8) BS02 MG 7.1.1.9 GO:0004129 ... P68530 37695261
    818364 8gbt:O (2.8) BS03 CUA 7.1.1.9 GO:0004129 ... P68530 37695261
    818365 8gbt:Q (2.8) BS01 DMU ? GO:0006123 ... P00423 37695261
    818366 8gbt:S (2.8) BS01 ZN ? GO:0005740 ... P00428 37695261
    818367 8gbt:Z (2.8) BS01 DMU ? GO:0006123 ... P10175 37695261
    818368 8gbu:A (2.5) BS01 YWE ? GO:0005198 ... P03147 37633618
    818369 8gbu:A (2.5) BS02 YWE ? GO:0005198 ... P03147 37633618
    818370 8gbu:B (2.5) BS01 YWE ? GO:0005198 ... P03147 37633618
    818371 8gbu:C (2.5) BS01 YWE ? GO:0005198 ... P03147 37633618
    818372 8gbu:C (2.5) BS02 YWE ? GO:0005198 ... P03147 37633618
    818373 8gbu:D (2.5) BS01 YWE ? GO:0005198 ... P03147 37633618
    818374 8gbu:E (2.5) BS01 YWE ? GO:0005198 ... P03147 37633618
    818375 8gbu:E (2.5) BS02 YWE ? GO:0005198 ... P03147 37633618
    818376 8gbu:F (2.5) BS01 YWE ? GO:0005198 ... P03147 37633618
    818377 8gc2:A (4.1) BS01 MAN ? GO:0000149 ... P42260 N/A
    818378 8gc2:A (4.1) BS02 DOQ ? GO:0000149 ... P42260 N/A
    818379 8gc2:B (4.1) BS01 MAN ? GO:0000149 ... P42260 N/A
    818380 8gc2:B (4.1) BS02 DOQ ? GO:0000149 ... P42260 N/A
    818381 8gc2:C (4.1) BS01 MAN ? GO:0000149 ... P42260 N/A
    818382 8gc2:C (4.1) BS02 DOQ ? GO:0000149 ... P42260 N/A
    818383 8gc2:D (4.1) BS01 MAN ? GO:0000149 ... P42260 N/A
    818384 8gc3:A (3.8) BS01 DOQ ? GO:0000149 ... P42260 N/A
    818385 8gc3:B (3.8) BS01 MAN ? GO:0000149 ... P42260 N/A
    818386 8gc3:B (3.8) BS02 DOQ ? GO:0000149 ... P42260 N/A
    818387 8gc3:C (3.8) BS01 MAN ? GO:0000149 ... P42260 N/A
    818388 8gc3:C (3.8) BS02 DOQ ? GO:0000149 ... P42260 N/A
    818389 8gc3:D (3.8) BS01 MAN ? GO:0000149 ... P42260 N/A
    818390 8gc3:D (3.8) BS02 DOQ ? GO:0000149 ... P42260 N/A
    818391 8gc4:A (3.93) BS01 DOQ ? GO:0000149 ... P42260 N/A
    818392 8gc4:B (3.93) BS01 DOQ ? GO:0000149 ... P42260 N/A
    818393 8gc4:C (3.93) BS01 DOQ ? GO:0000149 ... P42260 N/A
    818394 8gc4:D (3.93) BS01 DOQ ? GO:0000149 ... P42260 N/A
    818395 8gc5:A (3.93) BS01 DOQ ? GO:0000149 ... P42260 40442317
    818396 8gc5:B (3.93) BS01 DOQ ? GO:0000149 ... P42260 40442317
    818397 8gc5:C (3.93) BS01 DOQ ? GO:0000149 ... P42260 40442317
    818398 8gc5:D (3.93) BS01 DOQ ? GO:0000149 ... P42260 40442317
    818399 8gc7:A (1.9) BS01 YXJ 2.7.10.2 GO:0004672 ... Q06187 38301010
    818400 8gc8:A (1.75) BS01 YXJ 2.7.10.2 GO:0004672 ... Q06187 38301010

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).