SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    818801 8ghu:f (3.0) BS01 rna ? GO:0003735 ... P02358 36993224
    818802 8ghu:g (3.0) BS01 rna ? GO:0003723 ... P02359 36993224
    818803 8ghu:h (3.0) BS01 rna ? GO:0000028 ... P0A7W7 36993224
    818804 8ghu:l (3.0) BS01 rna ? GO:0000049 ... P0A7S3 36993224
    818805 8ghu:m (3.0) BS01 rna ? GO:0003676 ... P0A7S9 36993224
    818806 8ghu:o (3.0) BS01 rna ? GO:0000028 ... P0ADZ4 36993224
    818807 8ghu:p (3.0) BS01 rna ? GO:0000028 ... P0A7T3 36993224
    818808 8ghu:q (3.0) BS01 rna ? GO:0000028 ... P0AG63 36993224
    818809 8ghu:r (3.0) BS01 rna ? GO:0003735 ... P0A7T7 36993224
    818810 8ghu:t (3.0) BS01 rna ? GO:0000028 ... P0A7U7 36993224
    818811 8ghv:D (2.8) BS01 ZI5 ? GO:0004930 ... P21554 37160876
    818812 8ghy:A (1.8) BS01 BGC ? GO:0000272 ... A0A1Y1V643 37548665
    818813 8ghy:A (1.8) BS02 BGC ? GO:0000272 ... A0A1Y1V643 37548665
    818814 8ghy:B (1.8) BS01 BGC ? GO:0000272 ... A0A1Y1V643 37548665
    818815 8ghy:B (1.8) BS02 BGC ? GO:0000272 ... A0A1Y1V643 37548665
    818816 8gi3:A (1.52) BS01 GDP 3.6.5.2 GO:0000281 ... P61586 N/A
    818817 8gi3:A (1.52) BS02 MG 3.6.5.2 GO:0000281 ... P61586 N/A
    818818 8gi6:A (1.4) BS01 GDP 3.6.5.2 GO:0000281 ... P61586 N/A
    818819 8gi6:A (1.4) BS02 MG 3.6.5.2 GO:0000281 ... P61586 N/A
    818820 8gi7:A (3.3) BS01 FLC 2.3.3.16 GO:0005975 ... P9WPD3 37252106
    818821 8gi7:B (3.3) BS01 FLC 2.3.3.16 GO:0005975 ... P9WPD3 37252106
    818822 8gi7:C (3.3) BS01 FLC 2.3.3.16 GO:0005975 ... P9WPD3 37252106
    818823 8gi7:D (3.3) BS01 FLC 2.3.3.16 GO:0005975 ... P9WPD3 37252106
    818824 8gi8:A (2.88) BS01 RET N/A GO:0016020 ... N/A 37474513
    818825 8gi8:A (2.88) BS02 CLR N/A GO:0016020 ... N/A 37474513
    818826 8gi8:A (2.88) BS03 CLR N/A GO:0016020 ... N/A 37474513
    818827 8gi8:A (2.88) BS04 CLR N/A GO:0016020 ... N/A 37474513
    818828 8gi9:A (2.84) BS01 RET N/A GO:0016020 ... N/A 37474513
    818829 8gi9:A (2.84) BS02 CLR N/A GO:0016020 ... N/A 37474513
    818830 8gi9:A (2.84) BS03 CLR N/A GO:0016020 ... N/A 37474513
    818831 8gi9:A (2.84) BS04 CLR N/A GO:0016020 ... N/A 37474513
    818832 8gi9:A (2.84) BS05 CLR N/A GO:0016020 ... N/A 37474513
    818833 8gi9:A (2.84) BS06 CLR N/A GO:0016020 ... N/A 37474513
    818834 8gi9:A (2.84) BS07 CLR N/A GO:0016020 ... N/A 37474513
    818835 8gia:A (1.86) BS01 ZJ3 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 37126856
    818836 8gia:C (1.86) BS01 ZJ3 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 37126856
    818837 8gic:A (1.64) BS01 D4P ? N/A A0A561VI36 38030603
    818838 8gic:A (1.64) BS02 D4P ? N/A A0A561VI36 38030603
    818839 8gic:B (1.64) BS01 D4P ? N/A A0A561VI36 38030603
    818840 8gih:A (2.65) BS01 ZMH ? GO:0005198 ... L7R9I1 35644301
    818841 8gih:A (2.65) BS02 ZMH ? GO:0005198 ... L7R9I1 35644301
    818842 8gih:B (2.65) BS01 ZMH ? GO:0005198 ... L7R9I1 35644301
    818843 8gih:C (2.65) BS01 ZMH ? GO:0005198 ... L7R9I1 35644301
    818844 8gih:C (2.65) BS02 ZMH ? GO:0005198 ... L7R9I1 35644301
    818845 8gih:D (2.65) BS01 ZMH ? GO:0005198 ... L7R9I1 35644301
    818846 8gih:E (2.65) BS01 ZMH ? GO:0005198 ... L7R9I1 35644301
    818847 8gih:E (2.65) BS02 ZMH ? GO:0005198 ... L7R9I1 35644301
    818848 8gih:F (2.65) BS01 ZMH ? GO:0005198 ... L7R9I1 35644301
    818849 8gil:A (2.1) BS01 K 1.1.1.103 N/A Q4CU39 39675710
    818850 8gil:B (2.1) BS01 K 1.1.1.103 N/A Q4CU39 39675710
    818851 8gim:A (2.63) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    818852 8gim:A (2.63) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    818853 8gim:A (2.63) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    818854 8gim:A (2.63) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    818855 8gim:A (2.63) BS05 ATP 2.7.7.86 N/A Q8C6L5 38740774
    818856 8gim:A (2.63) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    818857 8gim:A (2.63) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    818858 8gim:A (2.63) BS08 MG 2.7.7.86 N/A Q8C6L5 38740774
    818859 8gim:C (2.63) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    818860 8gim:C (2.63) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    818861 8gim:C (2.63) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    818862 8gim:C (2.63) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    818863 8gim:C (2.63) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    818864 8gim:C (2.63) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    818865 8gim:C (2.63) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    818866 8gin:A (2.75) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    818867 8gin:A (2.75) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    818868 8gin:A (2.75) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    818869 8gin:A (2.75) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    818870 8gin:A (2.75) BS05 ATP 2.7.7.86 N/A Q8C6L5 38740774
    818871 8gin:A (2.75) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    818872 8gin:A (2.75) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    818873 8gin:A (2.75) BS08 MG 2.7.7.86 N/A Q8C6L5 38740774
    818874 8gin:C (2.75) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    818875 8gin:C (2.75) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    818876 8gin:C (2.75) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    818877 8gin:C (2.75) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    818878 8gin:C (2.75) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    818879 8gin:C (2.75) BS06 MN 2.7.7.86 N/A Q8C6L5 38740774
    818880 8gin:C (2.75) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    818881 8gio:A (2.67) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    818882 8gio:A (2.67) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    818883 8gio:A (2.67) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    818884 8gio:A (2.67) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    818885 8gio:A (2.67) BS05 ATP 2.7.7.86 N/A Q8C6L5 38740774
    818886 8gio:A (2.67) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    818887 8gio:A (2.67) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    818888 8gio:A (2.67) BS08 MN 2.7.7.86 N/A Q8C6L5 38740774
    818889 8gio:C (2.67) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    818890 8gio:C (2.67) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    818891 8gio:C (2.67) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    818892 8gio:C (2.67) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    818893 8gio:C (2.67) BS05 ATP 2.7.7.86 N/A Q8C6L5 38740774
    818894 8gio:C (2.67) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    818895 8gio:C (2.67) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    818896 8gio:C (2.67) BS08 MN 2.7.7.86 N/A Q8C6L5 38740774
    818897 8gip:A (2.7) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    818898 8gip:A (2.7) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    818899 8gip:A (2.7) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    818900 8gip:A (2.7) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    818901 8gip:A (2.7) BS05 ATP 2.7.7.86 N/A Q8C6L5 38740774
    818902 8gip:A (2.7) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    818903 8gip:A (2.7) BS07 ZN 2.7.7.86 N/A Q8C6L5 38740774
    818904 8gip:A (2.7) BS08 MN 2.7.7.86 N/A Q8C6L5 38740774
    818905 8gip:C (2.7) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    818906 8gip:C (2.7) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    818907 8gip:C (2.7) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    818908 8gip:C (2.7) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    818909 8gip:C (2.7) BS05 MG 2.7.7.86 N/A Q8C6L5 38740774
    818910 8gip:C (2.7) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    818911 8gip:C (2.7) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    818912 8gir:A (2.5) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    818913 8gir:A (2.5) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    818914 8gir:A (2.5) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    818915 8gir:A (2.5) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    818916 8gir:A (2.5) BS05 ATP 2.7.7.86 N/A Q8C6L5 38740774
    818917 8gir:A (2.5) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    818918 8gir:A (2.5) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    818919 8gir:A (2.5) BS08 MN 2.7.7.86 N/A Q8C6L5 38740774
    818920 8gir:C (2.5) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    818921 8gir:C (2.5) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    818922 8gir:C (2.5) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    818923 8gir:C (2.5) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    818924 8gir:C (2.5) BS05 ATP 2.7.7.86 N/A Q8C6L5 38740774
    818925 8gir:C (2.5) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    818926 8gir:C (2.5) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    818927 8gir:C (2.5) BS08 MN 2.7.7.86 N/A Q8C6L5 38740774
    818928 8gis:A (2.46) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    818929 8gis:A (2.46) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    818930 8gis:A (2.46) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    818931 8gis:A (2.46) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    818932 8gis:A (2.46) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    818933 8gis:A (2.46) BS06 MN 2.7.7.86 N/A Q8C6L5 38740774
    818934 8gis:A (2.46) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    818935 8gis:C (2.46) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    818936 8gis:C (2.46) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    818937 8gis:C (2.46) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    818938 8gis:C (2.46) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    818939 8gis:C (2.46) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    818940 8gis:C (2.46) BS06 MN 2.7.7.86 N/A Q8C6L5 38740774
    818941 8gis:C (2.46) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    818942 8git:A (2.72) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    818943 8git:A (2.72) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    818944 8git:A (2.72) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    818945 8git:A (2.72) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    818946 8git:A (2.72) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    818947 8git:A (2.72) BS06 MN 2.7.7.86 N/A Q8C6L5 38740774
    818948 8git:A (2.72) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    818949 8git:C (2.72) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    818950 8git:C (2.72) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    818951 8git:C (2.72) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    818952 8git:C (2.72) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    818953 8git:C (2.72) BS05 ATP 2.7.7.86 N/A Q8C6L5 38740774
    818954 8git:C (2.72) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    818955 8git:C (2.72) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    818956 8git:C (2.72) BS08 MN 2.7.7.86 N/A Q8C6L5 38740774
    818957 8giw:A (3.15) BS01 FLC 2.3.3.16 GO:0005975 ... P9WPD3 37252106
    818958 8giw:B (3.15) BS01 FLC 2.3.3.16 GO:0005975 ... P9WPD3 37252106
    818959 8giw:C (3.15) BS01 FLC 2.3.3.16 GO:0005975 ... P9WPD3 37252106
    818960 8giw:D (3.15) BS01 FLC 2.3.3.16 GO:0005975 ... P9WPD3 37252106
    818961 8gix:E (3.9) BS01 TCE N/A GO:0000417 ... G0S723 38925115
    818962 8giy:B (3.7) BS01 AGS 2.7.7.7 GO:0003677 ... P06710 39333521
    818963 8giy:B (3.7) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 39333521
    818964 8giy:C (3.7) BS01 AGS 2.7.7.7 GO:0003677 ... P06710 39333521
    818965 8giy:C (3.7) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 39333521
    818966 8giy:D (3.7) BS01 AGS 2.7.7.7 GO:0003677 ... P06710 39333521
    818967 8giy:D (3.7) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 39333521
    818968 8giy:E (3.7) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 39333521
    818969 8giz:B (2.7) BS01 AGS 2.7.7.7 GO:0003677 ... P06710 39333521
    818970 8giz:B (2.7) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 39333521
    818971 8giz:C (2.7) BS01 AGS 2.7.7.7 GO:0003677 ... P06710 39333521
    818972 8giz:C (2.7) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 39333521
    818973 8giz:D (2.7) BS01 AGS 2.7.7.7 GO:0003677 ... P06710 39333521
    818974 8giz:D (2.7) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 39333521
    818975 8giz:E (2.7) BS01 AGS 2.7.7.7 GO:0003677 ... P28631 39333521
    818976 8giz:E (2.7) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 39333521
    818977 8gj0:A (2.9) BS01 dna 2.7.7.7 GO:0003677 ... P28630 39333521
    818978 8gj0:B (2.9) BS01 peptide 2.7.7.7 GO:0003677 ... P06710 39333521
    818979 8gj0:B (2.9) BS02 dna 2.7.7.7 GO:0003677 ... P06710 39333521
    818980 8gj0:B (2.9) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 39333521
    818981 8gj0:B (2.9) BS04 ZN 2.7.7.7 GO:0003677 ... P06710 39333521
    818982 8gj0:C (2.9) BS01 peptide 2.7.7.7 GO:0003677 ... P06710 39333521
    818983 8gj0:C (2.9) BS02 dna 2.7.7.7 GO:0003677 ... P06710 39333521
    818984 8gj0:C (2.9) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 39333521
    818985 8gj0:C (2.9) BS04 ZN 2.7.7.7 GO:0003677 ... P06710 39333521
    818986 8gj0:C (2.9) BS05 ALF 2.7.7.7 GO:0003677 ... P06710 39333521
    818987 8gj0:D (2.9) BS01 peptide 2.7.7.7 GO:0003677 ... P06710 39333521
    818988 8gj0:D (2.9) BS02 dna 2.7.7.7 GO:0003677 ... P06710 39333521
    818989 8gj0:D (2.9) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 39333521
    818990 8gj0:D (2.9) BS04 ALF 2.7.7.7 GO:0003677 ... P06710 39333521
    818991 8gj0:D (2.9) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 39333521
    818992 8gj0:E (2.9) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 39333521
    818993 8gj1:A (3.0) BS01 dna 2.7.7.7 GO:0003677 ... P28630 39333521
    818994 8gj1:B (3.0) BS01 peptide 2.7.7.7 GO:0003677 ... P06710 39333521
    818995 8gj1:B (3.0) BS02 dna 2.7.7.7 GO:0003677 ... P06710 39333521
    818996 8gj1:B (3.0) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 39333521
    818997 8gj1:B (3.0) BS04 ALF 2.7.7.7 GO:0003677 ... P06710 39333521
    818998 8gj1:B (3.0) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 39333521
    818999 8gj1:C (3.0) BS01 peptide 2.7.7.7 GO:0003677 ... P06710 39333521
    819000 8gj1:C (3.0) BS02 dna 2.7.7.7 GO:0003677 ... P06710 39333521
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).