SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    818801 8h67:K (3.8) BS01 rna ? N/A A0A068N458 38750051
    818802 8h67:L (3.8) BS01 dna ? N/A A0A068N831 38750051
    818803 8h67:L (3.8) BS02 dna ? N/A A0A068N831 38750051
    818804 8h68:A (2.2) BS01 GLC 1.14.11.51 GO:0005515 ... P0AEX9
    Q8MNT9
    36764665
    818805 8h68:A (2.2) BS02 GLC 1.14.11.51 GO:0005515 ... P0AEX9
    Q8MNT9
    36764665
    818806 8h68:A (2.2) BS03 GLC 1.14.11.51 GO:0005515 ... P0AEX9
    Q8MNT9
    36764665
    818807 8h68:A (2.2) BS04 GLC 1.14.11.51 GO:0005515 ... P0AEX9
    Q8MNT9
    36764665
    818808 8h68:A (2.2) BS05 GLY 1.14.11.51 GO:0005515 ... P0AEX9
    Q8MNT9
    36764665
    818809 8h68:A (2.2) BS06 MG 1.14.11.51 GO:0005515 ... P0AEX9
    Q8MNT9
    36764665
    818810 8h69:A (3.7) BS01 rna 3.1.-.- GO:0003723 ... Q9Q0U9 37488357
    818811 8h69:A (3.7) BS02 rna 3.1.-.- GO:0003723 ... Q9Q0U9 37488357
    818812 8h69:B (3.7) BS01 rna 2.7.7.48 GO:0000166 ... Q9Q0V0 37488357
    818813 8h69:B (3.7) BS02 rna 2.7.7.48 GO:0000166 ... Q9Q0V0 37488357
    818814 8h69:C (3.7) BS01 rna ? GO:0001172 ... Q9Q0V1 37488357
    818815 8h6a:A (1.601) BS01 CO 1.13.11.27 GO:0003868 ... P93836 38375801
    818816 8h6a:A (1.601) BS02 KWI 1.13.11.27 GO:0003868 ... P93836 38375801
    818817 8h6b:A (1.897) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    818818 8h6b:A (1.897) BS02 N1K 1.13.11.27 GO:0003868 ... P93836 N/A
    818819 8h6c:A (2.5) BS01 MLC 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92830 37040526
    818820 8h6c:B (2.5) BS01 MLC 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92830 37040526
    818821 8h6c:C (2.5) BS01 MLC 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92830 37040526
    818822 8h6c:D (2.5) BS01 MLC 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92830 37040526
    818823 8h6c:E (2.5) BS01 MLC 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92830 37040526
    818824 8h6c:F (2.5) BS01 MLC 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92830 37040526
    818825 8h6c:G (2.5) BS01 MLC 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92830 37040526
    818826 8h6c:H (2.5) BS01 MLC 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92830 37040526
    818827 8h6d:A (3.26) BS01 GRA 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92830 37040526
    818828 8h6d:B (3.26) BS01 GRA 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92830 37040526
    818829 8h6d:C (3.26) BS01 GRA 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92830 37040526
    818830 8h6d:D (3.26) BS01 GRA 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92830 37040526
    818831 8h6d:E (3.26) BS01 GRA 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92830 37040526
    818832 8h6d:F (3.26) BS01 GRA 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92830 37040526
    818833 8h6d:G (3.26) BS01 GRA 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92830 37040526
    818834 8h6d:H (3.26) BS01 GRA 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92830 37040526
    818835 8h6e:2C (3.2) BS01 rna ? GO:0000398 ... P08579 38658629
    818836 8h6e:2D (3.2) BS01 rna ? GO:0000389 ... Q15459 38658629
    818837 8h6e:2D (3.2) BS02 rna ? GO:0000389 ... Q15459 38658629
    818838 8h6e:2F (3.2) BS01 rna ? GO:0000375 ... Q12874 38658629
    818839 8h6e:2G (3.2) BS01 rna ? GO:0000245 ... O75533 38658629
    818840 8h6e:2G (3.2) BS02 rna ? GO:0000245 ... O75533 38658629
    818841 8h6e:2c (3.2) BS01 rna ? GO:0000245 ... P62316 38658629
    818842 8h6e:2f (3.2) BS01 rna ? GO:0000245 ... P62308 38658629
    818843 8h6e:2g (3.2) BS01 rna ? GO:0000243 ... P62318 38658629
    818844 8h6e:4B (3.2) BS01 rna ? GO:0000244 ... O43395 38658629
    818845 8h6e:4B (3.2) BS02 rna ? GO:0000244 ... O43395 38658629
    818846 8h6e:4D (3.2) BS01 rna ? GO:0000244 ... Q8WWY3 38658629
    818847 8h6e:4D (3.2) BS02 rna ? GO:0000244 ... Q8WWY3 38658629
    818848 8h6e:4E (3.2) BS01 rna ? GO:0000398 ... P55769 38658629
    818849 8h6e:4F (3.2) BS01 rna ? GO:0000245 ... P83876 38658629
    818850 8h6e:4G (3.2) BS01 rna ? GO:0000244 ... O94906 38658629
    818851 8h6e:4G (3.2) BS02 rna ? GO:0000244 ... O94906 38658629
    818852 8h6e:4R (3.2) BS01 rna ? GO:0000398 ... Q9BTD8 38658629
    818853 8h6e:4R (3.2) BS02 rna ? GO:0000398 ... Q9BTD8 38658629
    818854 8h6e:4S (3.2) BS01 rna ? GO:0000387 ... O43290 38658629
    818855 8h6e:4S (3.2) BS02 peptide ? GO:0000387 ... O43290 38658629
    818856 8h6e:4T (3.2) BS01 ZN 3.4.19.12 GO:0000245 ... Q53GS9 38658629
    818857 8h6e:4a (3.2) BS01 rna ? GO:0000387 ... P14678 38658629
    818858 8h6e:4b (3.2) BS01 rna ? GO:0000243 ... P62314 38658629
    818859 8h6e:4c (3.2) BS01 rna ? GO:0000245 ... P62316 38658629
    818860 8h6e:4d (3.2) BS01 rna ? GO:0000387 ... P62306 38658629
    818861 8h6e:4e (3.2) BS01 rna ? GO:0000245 ... P62304 38658629
    818862 8h6e:4f (3.2) BS01 rna ? GO:0000245 ... P62308 38658629
    818863 8h6e:4g (3.2) BS01 rna ? GO:0000243 ... P62318 38658629
    818864 8h6e:5B (3.2) BS01 rna ? GO:0000244 ... Q6P2Q9 38658629
    818865 8h6e:5B (3.2) BS02 rna ? GO:0000244 ... Q6P2Q9 38658629
    818866 8h6e:5B (3.2) BS03 rna ? GO:0000244 ... Q6P2Q9 38658629
    818867 8h6e:5B (3.2) BS04 peptide ? GO:0000244 ... Q6P2Q9 38658629
    818868 8h6e:5B (3.2) BS05 IHP ? GO:0000244 ... Q6P2Q9 38658629
    818869 8h6e:5C (3.2) BS01 MG ? GO:0000398 ... Q15029 38658629
    818870 8h6e:5C (3.2) BS02 GTP ? GO:0000398 ... Q15029 38658629
    818871 8h6e:5a (3.2) BS01 rna ? GO:0000387 ... P14678 38658629
    818872 8h6e:5b (3.2) BS01 rna ? GO:0000243 ... P62314 38658629
    818873 8h6e:5c (3.2) BS01 rna ? GO:0000245 ... P62316 38658629
    818874 8h6e:5d (3.2) BS01 rna ? GO:0000387 ... P62306 38658629
    818875 8h6e:5e (3.2) BS01 rna ? GO:0000245 ... P62304 38658629
    818876 8h6e:5f (3.2) BS01 rna ? GO:0000245 ... P62308 38658629
    818877 8h6e:5g (3.2) BS01 rna ? GO:0000243 ... P62318 38658629
    818878 8h6e:6a (3.2) BS01 rna ? GO:0000244 ... Q9Y333 38658629
    818879 8h6e:6g (3.2) BS01 rna ? GO:0000398 ... O95777 38658629
    818880 8h6i:A (1.9) BS01 ODN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37696289
    818881 8h6j:2C (3.25) BS01 rna ? GO:0000398 ... P08579 38658629
    818882 8h6j:2F (3.25) BS01 rna ? GO:0000375 ... Q12874 38658629
    818883 8h6j:2G (3.25) BS01 rna ? GO:0000245 ... O75533 38658629
    818884 8h6j:2G (3.25) BS02 rna ? GO:0000245 ... O75533 38658629
    818885 8h6j:2c (3.25) BS01 rna ? GO:0000245 ... P62316 38658629
    818886 8h6j:2f (3.25) BS01 rna ? GO:0000245 ... P62308 38658629
    818887 8h6j:2g (3.25) BS01 rna ? GO:0000243 ... P62318 38658629
    818888 8h6j:4B (3.25) BS01 rna ? GO:0000244 ... O43395 38658629
    818889 8h6j:4B (3.25) BS02 rna ? GO:0000244 ... O43395 38658629
    818890 8h6j:4E (3.25) BS01 rna ? GO:0000398 ... P55769 38658629
    818891 8h6j:4G (3.25) BS01 rna ? GO:0000244 ... O94906 38658629
    818892 8h6j:4R (3.25) BS01 rna ? GO:0000398 ... Q9BTD8 38658629
    818893 8h6j:4R (3.25) BS02 rna ? GO:0000398 ... Q9BTD8 38658629
    818894 8h6j:4S (3.25) BS01 rna ? GO:0000387 ... O43290 38658629
    818895 8h6j:4S (3.25) BS02 peptide ? GO:0000387 ... O43290 38658629
    818896 8h6j:4T (3.25) BS01 ZN 3.4.19.12 GO:0000245 ... Q53GS9 38658629
    818897 8h6j:4a (3.25) BS01 rna ? GO:0000387 ... P14678 38658629
    818898 8h6j:4b (3.25) BS01 rna ? GO:0000243 ... P62314 38658629
    818899 8h6j:4c (3.25) BS01 rna ? GO:0000245 ... P62316 38658629
    818900 8h6j:4d (3.25) BS01 rna ? GO:0000387 ... P62306 38658629
    818901 8h6j:4e (3.25) BS01 rna ? GO:0000245 ... P62304 38658629
    818902 8h6j:4f (3.25) BS01 rna ? GO:0000245 ... P62308 38658629
    818903 8h6j:4g (3.25) BS01 rna ? GO:0000243 ... P62318 38658629
    818904 8h6j:5B (3.25) BS01 rna ? GO:0000244 ... Q6P2Q9 38658629
    818905 8h6j:5B (3.25) BS02 peptide ? GO:0000244 ... Q6P2Q9 38658629
    818906 8h6j:5B (3.25) BS03 IHP ? GO:0000244 ... Q6P2Q9 38658629
    818907 8h6j:5C (3.25) BS01 MG ? GO:0000398 ... Q15029 38658629
    818908 8h6j:5C (3.25) BS02 GTP ? GO:0000398 ... Q15029 38658629
    818909 8h6j:5a (3.25) BS01 rna ? GO:0000387 ... P14678 38658629
    818910 8h6j:5b (3.25) BS01 rna ? GO:0000243 ... P62314 38658629
    818911 8h6j:5c (3.25) BS01 rna ? GO:0000245 ... P62316 38658629
    818912 8h6j:5d (3.25) BS01 rna ? GO:0000387 ... P62306 38658629
    818913 8h6j:5e (3.25) BS01 rna ? GO:0000245 ... P62304 38658629
    818914 8h6j:5f (3.25) BS01 rna ? GO:0000245 ... P62308 38658629
    818915 8h6j:5g (3.25) BS01 rna ? GO:0000243 ... P62318 38658629
    818916 8h6j:6a (3.25) BS01 rna ? GO:0000244 ... Q9Y333 38658629
    818917 8h6j:6g (3.25) BS01 rna ? GO:0000398 ... O95777 38658629
    818918 8h6k:2C (2.7) BS01 rna ? GO:0000398 ... P08579 38658629
    818919 8h6k:2D (2.7) BS01 rna ? GO:0000389 ... Q15459 38658629
    818920 8h6k:2F (2.7) BS01 rna ? GO:0000375 ... Q12874 38658629
    818921 8h6k:2G (2.7) BS01 rna ? GO:0000245 ... O75533 38658629
    818922 8h6k:2G (2.7) BS02 rna ? GO:0000245 ... O75533 38658629
    818923 8h6k:2c (2.7) BS01 rna ? GO:0000245 ... P62316 38658629
    818924 8h6k:2f (2.7) BS01 rna ? GO:0000245 ... P62308 38658629
    818925 8h6k:2g (2.7) BS01 rna ? GO:0000243 ... P62318 38658629
    818926 8h6k:4B (2.7) BS01 rna ? GO:0000244 ... O43395 38658629
    818927 8h6k:4B (2.7) BS02 rna ? GO:0000244 ... O43395 38658629
    818928 8h6k:4D (2.7) BS01 rna ? GO:0000244 ... Q8WWY3 38658629
    818929 8h6k:4D (2.7) BS02 rna ? GO:0000244 ... Q8WWY3 38658629
    818930 8h6k:4E (2.7) BS01 rna ? GO:0000398 ... P55769 38658629
    818931 8h6k:4E (2.7) BS02 rna ? GO:0000398 ... P55769 38658629
    818932 8h6k:4F (2.7) BS01 rna ? GO:0000245 ... P83876 38658629
    818933 8h6k:4F (2.7) BS02 rna ? GO:0000245 ... P83876 38658629
    818934 8h6k:4G (2.7) BS01 rna ? GO:0000244 ... O94906 38658629
    818935 8h6k:4G (2.7) BS02 rna ? GO:0000244 ... O94906 38658629
    818936 8h6k:4I (2.7) BS01 rna ? GO:0000398 ... O75554 38658629
    818937 8h6k:4I (2.7) BS02 ZN ? GO:0000398 ... O75554 38658629
    818938 8h6k:4K (2.7) BS01 rna ? GO:0000398 ... P55081 38658629
    818939 8h6k:4K (2.7) BS02 rna ? GO:0000398 ... P55081 38658629
    818940 8h6k:4N (2.7) BS01 rna ? GO:0000398 ... Q96NC0 38658629
    818941 8h6k:4N (2.7) BS02 rna ? GO:0000398 ... Q96NC0 38658629
    818942 8h6k:4N (2.7) BS03 ZN ? GO:0000398 ... Q96NC0 38658629
    818943 8h6k:4c (2.7) BS01 rna ? GO:0000245 ... P62316 38658629
    818944 8h6k:4d (2.7) BS01 rna ? GO:0000387 ... P62306 38658629
    818945 8h6k:4f (2.7) BS01 rna ? GO:0000245 ... P62308 38658629
    818946 8h6k:5B (2.7) BS01 rna ? GO:0000244 ... Q6P2Q9 38658629
    818947 8h6k:5B (2.7) BS02 rna ? GO:0000244 ... Q6P2Q9 38658629
    818948 8h6k:5B (2.7) BS03 rna ? GO:0000244 ... Q6P2Q9 38658629
    818949 8h6k:5B (2.7) BS04 rna ? GO:0000244 ... Q6P2Q9 38658629
    818950 8h6k:5B (2.7) BS05 IHP ? GO:0000244 ... Q6P2Q9 38658629
    818951 8h6k:5C (2.7) BS01 GTP ? GO:0000398 ... Q15029 38658629
    818952 8h6k:5D (2.7) BS01 rna 3.6.4.13 GO:0000354 ... O75643 38658629
    818953 8h6k:5E (2.7) BS01 rna ? GO:0000375 ... Q96DI7 38658629
    818954 8h6k:5a (2.7) BS01 rna ? GO:0000387 ... P14678 38658629
    818955 8h6k:5b (2.7) BS01 rna ? GO:0000243 ... P62314 38658629
    818956 8h6k:5c (2.7) BS01 rna ? GO:0000245 ... P62316 38658629
    818957 8h6k:5d (2.7) BS01 rna ? GO:0000387 ... P62306 38658629
    818958 8h6k:5e (2.7) BS01 rna ? GO:0000245 ... P62304 38658629
    818959 8h6k:5f (2.7) BS01 rna ? GO:0000245 ... P62308 38658629
    818960 8h6k:5g (2.7) BS01 rna ? GO:0000243 ... P62318 38658629
    818961 8h6k:6a (2.7) BS01 rna ? GO:0000244 ... Q9Y333 38658629
    818962 8h6k:6g (2.7) BS01 rna ? GO:0000398 ... O95777 38658629
    818963 8h6l:2C (2.6) BS01 rna ? GO:0000398 ... P08579 38658629
    818964 8h6l:2D (2.6) BS01 rna ? GO:0000389 ... Q15459 38658629
    818965 8h6l:2D (2.6) BS02 rna ? GO:0000389 ... Q15459 38658629
    818966 8h6l:2F (2.6) BS01 rna ? GO:0000375 ... Q12874 38658629
    818967 8h6l:2G (2.6) BS01 rna ? GO:0000245 ... O75533 38658629
    818968 8h6l:2G (2.6) BS02 rna ? GO:0000245 ... O75533 38658629
    818969 8h6l:2c (2.6) BS01 rna ? GO:0000245 ... P62316 38658629
    818970 8h6l:2f (2.6) BS01 rna ? GO:0000245 ... P62308 38658629
    818971 8h6l:2g (2.6) BS01 rna ? GO:0000243 ... P62318 38658629
    818972 8h6l:4B (2.6) BS01 rna ? GO:0000244 ... O43395 38658629
    818973 8h6l:4B (2.6) BS02 rna ? GO:0000244 ... O43395 38658629
    818974 8h6l:4D (2.6) BS01 rna ? GO:0000244 ... Q8WWY3 38658629
    818975 8h6l:4D (2.6) BS02 rna ? GO:0000244 ... Q8WWY3 38658629
    818976 8h6l:4E (2.6) BS01 rna ? GO:0000398 ... P55769 38658629
    818977 8h6l:4E (2.6) BS02 rna ? GO:0000398 ... P55769 38658629
    818978 8h6l:4F (2.6) BS01 rna ? GO:0000245 ... P83876 38658629
    818979 8h6l:4F (2.6) BS02 rna ? GO:0000245 ... P83876 38658629
    818980 8h6l:4G (2.6) BS01 rna ? GO:0000244 ... O94906 38658629
    818981 8h6l:4G (2.6) BS02 rna ? GO:0000244 ... O94906 38658629
    818982 8h6l:4G (2.6) BS03 rna ? GO:0000244 ... O94906 38658629
    818983 8h6l:4I (2.6) BS01 rna ? GO:0000398 ... O75554 38658629
    818984 8h6l:4I (2.6) BS02 ZN ? GO:0000398 ... O75554 38658629
    818985 8h6l:4c (2.6) BS01 rna ? GO:0000245 ... P62316 38658629
    818986 8h6l:4d (2.6) BS01 rna ? GO:0000387 ... P62306 38658629
    818987 8h6l:4f (2.6) BS01 rna ? GO:0000245 ... P62308 38658629
    818988 8h6l:5B (2.6) BS01 rna ? GO:0000244 ... Q6P2Q9 38658629
    818989 8h6l:5B (2.6) BS02 rna ? GO:0000244 ... Q6P2Q9 38658629
    818990 8h6l:5B (2.6) BS03 rna ? GO:0000244 ... Q6P2Q9 38658629
    818991 8h6l:5B (2.6) BS04 rna ? GO:0000244 ... Q6P2Q9 38658629
    818992 8h6l:5B (2.6) BS05 IHP ? GO:0000244 ... Q6P2Q9 38658629
    818993 8h6l:5C (2.6) BS01 GTP ? GO:0000398 ... Q15029 38658629
    818994 8h6l:5D (2.6) BS01 rna 3.6.4.13 GO:0000354 ... O75643 38658629
    818995 8h6l:5E (2.6) BS01 rna ? GO:0000375 ... Q96DI7 38658629
    818996 8h6l:5a (2.6) BS01 rna ? GO:0000387 ... P14678 38658629
    818997 8h6l:5b (2.6) BS01 rna ? GO:0000243 ... P62314 38658629
    818998 8h6l:5c (2.6) BS01 rna ? GO:0000245 ... P62316 38658629
    818999 8h6l:5d (2.6) BS01 rna ? GO:0000387 ... P62306 38658629
    819000 8h6l:5e (2.6) BS01 rna ? GO:0000245 ... P62304 38658629

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).