SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    819001 8h6l:5f (2.6) BS01 rna ? GO:0000245 ... P62308 38658629
    819002 8h6l:5g (2.6) BS01 rna ? GO:0000243 ... P62318 38658629
    819003 8h6l:6a (2.6) BS01 rna ? GO:0000244 ... Q9Y333 38658629
    819004 8h6l:6g (2.6) BS01 rna ? GO:0000398 ... O95777 38658629
    819005 8h6n:A (1.65) BS01 4WI 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37696289
    819006 8h6n:A (1.65) BS02 LQZ 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37696289
    819007 8h6p:A (2.44) BS01 WZU 2.7.11.22 GO:0000082 ... P24941 36923916
    819008 8h6s:A (3.0) BS01 MG 2.3.1.39 GO:0004314 ... Q76KY5 36512613
    819009 8h6s:A (3.0) BS02 9EF 2.3.1.39 GO:0004314 ... Q76KY5 36512613
    819010 8h6s:B (3.0) BS01 MG 2.3.1.39 GO:0004314 ... Q76KY5 36512613
    819011 8h6s:B (3.0) BS02 9EF 2.3.1.39 GO:0004314 ... Q76KY5 36512613
    819012 8h6t:A (3.0) BS01 WZZ 2.7.11.22 GO:0000082 ... P24941 36923916
    819013 8h6u:A (2.78) BS01 MG 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    819014 8h6u:A (2.78) BS02 MG 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    819015 8h6u:A (2.78) BS03 POP 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    819016 8h6u:A (2.78) BS04 BTM 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    819017 8h6u:B (2.78) BS01 MG 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    819018 8h6u:B (2.78) BS02 MG 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    819019 8h6u:B (2.78) BS03 POP 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    819020 8h6u:B (2.78) BS04 BTM 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    819021 8h6u:C (2.78) BS01 MG 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    819022 8h6u:C (2.78) BS02 MG 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    819023 8h6u:C (2.78) BS03 POP 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    819024 8h6u:C (2.78) BS04 BTM 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    819025 8h6u:D (2.78) BS01 MG 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    819026 8h6u:D (2.78) BS02 MG 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    819027 8h6u:D (2.78) BS03 POP 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    819028 8h6u:D (2.78) BS04 BTM 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    819029 8h72:A (2.09) BS01 MG 4.2.3.135 GO:0010333 ... A0A4S8MAF3 37018048
    819030 8h72:A (2.09) BS02 BTM 4.2.3.135 GO:0010333 ... A0A4S8MAF3 37018048
    819031 8h72:B (2.09) BS01 MG 4.2.3.135 GO:0010333 ... A0A4S8MAF3 37018048
    819032 8h72:B (2.09) BS02 BTM 4.2.3.135 GO:0010333 ... A0A4S8MAF3 37018048
    819033 8h75:A (3.75) BS01 KX0 2.7.10.1 GO:0004672 ... P21802 N/A
    819034 8h75:B (3.75) BS01 KX0 2.7.10.1 GO:0004672 ... P21802 N/A
    819035 8h75:C (3.75) BS01 KX0 2.7.10.1 GO:0004672 ... P21802 N/A
    819036 8h75:D (3.75) BS01 KX0 2.7.10.1 GO:0004672 ... P21802 N/A
    819037 8h77:A (3.2) BS01 ADP ? GO:0001890 ... P11499 36649707
    819038 8h77:A (3.2) BS02 BEF ? GO:0001890 ... P11499 36649707
    819039 8h77:B (3.2) BS01 ADP ? GO:0001890 ... P11499 36649707
    819040 8h77:B (3.2) BS02 BEF ? GO:0001890 ... P11499 36649707
    819041 8h78:A (2.4) BS01 ZN 3.4.24.24 GO:0004222 ... P08253 36595440
    819042 8h78:A (2.4) BS02 ZN 3.4.24.24 GO:0004222 ... P08253 36595440
    819043 8h78:A (2.4) BS03 CA 3.4.24.24 GO:0004222 ... P08253 36595440
    819044 8h78:A (2.4) BS04 CA 3.4.24.24 GO:0004222 ... P08253 36595440
    819045 8h78:A (2.4) BS05 CA 3.4.24.24 GO:0004222 ... P08253 36595440
    819046 8h78:A (2.4) BS06 L2U 3.4.24.24 GO:0004222 ... P08253 36595440
    819047 8h78:B (2.4) BS01 ZN 3.4.24.24 GO:0004222 ... P08253 36595440
    819048 8h78:B (2.4) BS02 ZN 3.4.24.24 GO:0004222 ... P08253 36595440
    819049 8h78:B (2.4) BS03 CA 3.4.24.24 GO:0004222 ... P08253 36595440
    819050 8h78:B (2.4) BS04 CA 3.4.24.24 GO:0004222 ... P08253 36595440
    819051 8h78:B (2.4) BS05 CA 3.4.24.24 GO:0004222 ... P08253 36595440
    819052 8h78:B (2.4) BS06 L2U 3.4.24.24 GO:0004222 ... P08253 36595440
    819053 8h79:A (2.07) BS01 RET N/A GO:0005216 ... N/A 39485071
    819054 8h7a:A (1.92) BS01 dna 2.3.1.48 GO:0003677 ... Q92794 36537216
    819055 8h7a:A (1.92) BS02 dna 2.3.1.48 GO:0003677 ... Q92794 36537216
    819056 8h7a:B (1.92) BS01 dna 2.3.1.48 GO:0003677 ... Q92794 36537216
    819057 8h7a:B (1.92) BS02 dna 2.3.1.48 GO:0003677 ... Q92794 36537216
    819058 8h7a:E (1.92) BS01 dna 2.3.1.48 GO:0003677 ... Q92794 36537216
    819059 8h7a:E (1.92) BS02 dna 2.3.1.48 GO:0003677 ... Q92794 36537216
    819060 8h7a:F (1.92) BS01 dna 2.3.1.48 GO:0003677 ... Q92794 36537216
    819061 8h7a:F (1.92) BS02 dna 2.3.1.48 GO:0003677 ... Q92794 36537216
    819062 8h7b:A (1.46408) BS01 QHR ? GO:0042981 ... Q07820 36774655
    819063 8h7b:B (1.46408) BS01 QHR ? GO:0042981 ... Q07820 36774655
    819064 8h7b:B (1.46408) BS02 QHR ? GO:0042981 ... Q07820 36774655
    819065 8h7f:A (2.45013) BS01 QEW 2.7.10.2 GO:0004672 ... P00519 36774655
    819066 8h7f:B (2.45013) BS01 QEW 2.7.10.2 GO:0004672 ... P00519 36774655
    819067 8h7g:K (3.7) BS01 peptide ? GO:0000118 ... Q9Y6J9 36414614
    819068 8h7h:A (2.2779) BS01 QH9 2.7.10.2 GO:0004672 ... P00519 36774655
    819069 8h7h:B (2.2779) BS01 QH9 2.7.10.2 GO:0004672 ... P00519 36774655
    819070 8h7i:A (2.4) BS01 WYN N/A N/A N/A N/A
    819071 8h7i:B (2.4) BS01 WYN N/A N/A N/A N/A
    819072 8h7k:A (1.45) BS01 peptide 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37696289
    819073 8h7m:A (1.87) BS01 WYS N/A N/A N/A N/A
    819074 8h7m:B (1.87) BS01 WYS N/A N/A N/A N/A
    819075 8h7n:A (1.99) BS01 WYW N/A N/A N/A N/A
    819076 8h7o:A (1.55) BS01 CA 3.4.21.62 GO:0004252 ... A0A7U5AV24 N/A
    819077 8h7p:A (1.82) BS01 peptide 3.4.21.62 GO:0004252 ... A0A7U5AV24 N/A
    819078 8h7p:A (1.82) BS02 CA 3.4.21.62 GO:0004252 ... A0A7U5AV24 N/A
    819079 8h7q:A (3.8) BS01 rna ? GO:0051607 ... A0A068N1Y0 N/A
    819080 8h7q:A (3.8) BS02 dna ? GO:0051607 ... A0A068N1Y0 N/A
    819081 8h7q:B (3.8) BS01 rna ? N/A A0A068N458 N/A
    819082 8h7q:C (3.8) BS01 rna ? N/A A0A068N458 N/A
    819083 8h7q:C (3.8) BS02 dna ? N/A A0A068N458 N/A
    819084 8h7q:E (3.8) BS01 rna ? N/A A0A068N458 N/A
    819085 8h7q:E (3.8) BS02 dna ? N/A A0A068N458 N/A
    819086 8h7q:F (3.8) BS01 rna ? N/A A0A068N458 N/A
    819087 8h7q:F (3.8) BS02 dna ? N/A A0A068N458 N/A
    819088 8h7q:G (3.8) BS01 rna ? N/A A0A068N458 N/A
    819089 8h7q:G (3.8) BS02 dna ? N/A A0A068N458 N/A
    819090 8h7q:H (3.8) BS01 rna ? N/A A0A068N458 N/A
    819091 8h7q:H (3.8) BS02 dna ? N/A A0A068N458 N/A
    819092 8h7q:I (3.8) BS01 rna ? N/A A0A068N458 N/A
    819093 8h7q:I (3.8) BS02 dna ? N/A A0A068N458 N/A
    819094 8h7q:K (3.8) BS01 dna ? N/A A0A068N831 N/A
    819095 8h7q:K (3.8) BS02 dna ? N/A A0A068N831 N/A
    819096 8h7q:N (3.8) BS01 dna ? N/A A0A068N831 N/A
    819097 8h7q:O (3.8) BS01 dna ? N/A A0A068N831 N/A
    819098 8h7r:A (2.0) BS01 WZ0 N/A N/A N/A N/A
    819099 8h7v:A (1.97) BS01 AKG ? GO:0046872 ... S5TUM1 36974966
    819100 8h7v:A (1.97) BS02 FE ? GO:0046872 ... S5TUM1 36974966
    819101 8h7v:B (1.97) BS01 AKG ? GO:0046872 ... S5TUM1 36974966
    819102 8h7v:B (1.97) BS02 FE ? GO:0046872 ... S5TUM1 36974966
    819103 8h7w:A (1.6) BS01 4WI 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37696289
    819104 8h7x:A (3.404) BS01 6GY 2.7.10.1 GO:0004672 ... P00533 38396251
    819105 8h7y:A (2.14) BS01 FE ? GO:0046872 ... S5TUM1 36974966
    819106 8h7y:A (2.14) BS02 AKG ? GO:0046872 ... S5TUM1 36974966
    819107 8h7y:A (2.14) BS03 PRO ? GO:0046872 ... S5TUM1 36974966
    819108 8h7y:B (2.14) BS01 FE ? GO:0046872 ... S5TUM1 36974966
    819109 8h7y:B (2.14) BS02 AKG ? GO:0046872 ... S5TUM1 36974966
    819110 8h7y:B (2.14) BS03 PRO ? GO:0046872 ... S5TUM1 36974966
    819111 8h81:A (1.84) BS01 HYP ? GO:0046872 ... S5TUM1 36974966
    819112 8h82:A (1.93) BS01 4WI 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37696289
    819113 8h85:A (2.38) BS01 HY3 ? GO:0046872 ... S5TUM1 36974966
    819114 8h86:A (2.56) BS01 RET N/A GO:0016020 ... N/A 37652010
    819115 8h87:A (2.53) BS01 RET N/A GO:0016020 ... N/A 37652010
    819116 8h8e:B (3.81) BS01 rna ? GO:0005254 ... Q0V9Z3 38942816
    819117 8h8e:C (3.81) BS01 rna ? GO:0005254 ... Q0V9Z3 38942816
    819118 8h8e:D (3.81) BS01 rna ? GO:0005254 ... Q0V9Z3 38942816
    819119 8h8e:E (3.81) BS01 rna ? GO:0005254 ... Q0V9Z3 38942816
    819120 8h8e:F (3.81) BS01 rna ? GO:0005254 ... Q0V9Z3 38942816
    819121 8h8i:A (2.03) BS01 KZO N/A N/A N/A 37749089
    819122 8h8j:C (3.2) BS01 WYB ? GO:0004930 ... Q9HC97 36543774
    819123 8h8j:C (3.2) BS02 CLR ? GO:0004930 ... Q9HC97 36543774
    819124 8h8j:C (3.2) BS03 CLR ? GO:0004930 ... Q9HC97 36543774
    819125 8h8q:H (2.5) BS01 peptide N/A N/A N/A N/A
    819126 8h8q:L (2.5) BS01 peptide N/A N/A N/A N/A
    819127 8h8r:A (1.7) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    819128 8h8r:A (1.7) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    819129 8h8r:A (1.7) BS03 CU 7.1.1.9 GO:0004129 ... P00396 36708913
    819130 8h8r:A (1.7) BS04 MG 7.1.1.9 GO:0004129 ... P00396 36708913
    819131 8h8r:A (1.7) BS05 CA 7.1.1.9 GO:0004129 ... P00396 36708913
    819132 8h8r:A (1.7) BS06 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    819133 8h8r:A (1.7) BS07 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    819134 8h8r:A (1.7) BS08 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    819135 8h8r:B (1.7) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 36708913
    819136 8h8r:B (1.7) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 36708913
    819137 8h8r:B (1.7) BS03 DMU 7.1.1.9 GO:0004129 ... P68530 36708913
    819138 8h8r:B (1.7) BS04 DMU 7.1.1.9 GO:0004129 ... P68530 36708913
    819139 8h8r:C (1.7) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    819140 8h8r:C (1.7) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    819141 8h8r:C (1.7) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    819142 8h8r:C (1.7) BS04 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    819143 8h8r:C (1.7) BS05 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    819144 8h8r:D (1.7) BS01 DMU ? GO:0006123 ... P00423 36708913
    819145 8h8r:F (1.7) BS01 ZN ? GO:0005740 ... P00428 36708913
    819146 8h8r:H (1.7) BS01 DMU ? GO:0005739 ... P00429 36708913
    819147 8h8r:J (1.7) BS01 DMU ? GO:0006123 ... P07470 36708913
    819148 8h8r:J (1.7) BS02 DMU ? GO:0006123 ... P07470 36708913
    819149 8h8r:L (1.7) BS01 DMU ? GO:0006123 ... P00430 36708913
    819150 8h8r:M (1.7) BS01 DMU ? GO:0006123 ... P10175 36708913
    819151 8h8r:M (1.7) BS02 DMU ? GO:0006123 ... P10175 36708913
    819152 8h8r:N (1.7) BS01 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    819153 8h8r:N (1.7) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    819154 8h8r:N (1.7) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    819155 8h8r:N (1.7) BS04 CU 7.1.1.9 GO:0004129 ... P00396 36708913
    819156 8h8r:N (1.7) BS05 MG 7.1.1.9 GO:0004129 ... P00396 36708913
    819157 8h8r:N (1.7) BS06 CA 7.1.1.9 GO:0004129 ... P00396 36708913
    819158 8h8r:N (1.7) BS07 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    819159 8h8r:N (1.7) BS08 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    819160 8h8r:O (1.7) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 36708913
    819161 8h8r:O (1.7) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 36708913
    819162 8h8r:O (1.7) BS03 DMU 7.1.1.9 GO:0004129 ... P68530 36708913
    819163 8h8r:P (1.7) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    819164 8h8r:P (1.7) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    819165 8h8r:P (1.7) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    819166 8h8r:P (1.7) BS04 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    819167 8h8r:Q (1.7) BS01 DMU ? GO:0006123 ... P00423 36708913
    819168 8h8r:S (1.7) BS01 ZN ? GO:0005740 ... P00428 36708913
    819169 8h8r:U (1.7) BS01 DMU ? GO:0005739 ... P00429 36708913
    819170 8h8r:W (1.7) BS01 DMU ? GO:0006123 ... P07470 36708913
    819171 8h8r:W (1.7) BS02 DMU ? GO:0006123 ... P07470 36708913
    819172 8h8r:Z (1.7) BS01 DMU ? GO:0006123 ... P10175 36708913
    819173 8h8r:Z (1.7) BS02 DMU ? GO:0006123 ... P10175 36708913
    819174 8h8s:A (1.7) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    819175 8h8s:A (1.7) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    819176 8h8s:A (1.7) BS03 CU 7.1.1.9 GO:0004129 ... P00396 36708913
    819177 8h8s:A (1.7) BS04 MG 7.1.1.9 GO:0004129 ... P00396 36708913
    819178 8h8s:A (1.7) BS05 CA 7.1.1.9 GO:0004129 ... P00396 36708913
    819179 8h8s:A (1.7) BS06 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    819180 8h8s:A (1.7) BS07 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    819181 8h8s:A (1.7) BS08 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    819182 8h8s:B (1.7) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 36708913
    819183 8h8s:B (1.7) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 36708913
    819184 8h8s:B (1.7) BS03 DMU 7.1.1.9 GO:0004129 ... P68530 36708913
    819185 8h8s:B (1.7) BS04 DMU 7.1.1.9 GO:0004129 ... P68530 36708913
    819186 8h8s:C (1.7) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    819187 8h8s:C (1.7) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    819188 8h8s:C (1.7) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    819189 8h8s:C (1.7) BS04 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    819190 8h8s:C (1.7) BS05 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    819191 8h8s:D (1.7) BS01 DMU ? GO:0006123 ... P00423 36708913
    819192 8h8s:F (1.7) BS01 ZN ? GO:0005740 ... P00428 36708913
    819193 8h8s:G (1.7) BS01 DMU ? GO:0005743 ... P07471 36708913
    819194 8h8s:H (1.7) BS01 DMU ? GO:0005739 ... P00429 36708913
    819195 8h8s:J (1.7) BS01 DMU ? GO:0006123 ... P07470 36708913
    819196 8h8s:J (1.7) BS02 DMU ? GO:0006123 ... P07470 36708913
    819197 8h8s:L (1.7) BS01 DMU ? GO:0006123 ... P00430 36708913
    819198 8h8s:M (1.7) BS01 DMU ? GO:0006123 ... P10175 36708913
    819199 8h8s:M (1.7) BS02 DMU ? GO:0006123 ... P10175 36708913
    819200 8h8s:N (1.7) BS01 DMU 7.1.1.9 GO:0004129 ... P00396 36708913

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).