SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    819401 8hal:B (4.4) BS01 dna ? GO:0000781 ... P62805 37460559
    819402 8hal:B (4.4) BS02 dna ? GO:0000781 ... P62805 37460559
    819403 8hal:C (4.4) BS01 dna ? GO:0000786 ... P04908 37460559
    819404 8hal:C (4.4) BS02 dna ? GO:0000786 ... P04908 37460559
    819405 8hal:D (4.4) BS01 dna ? GO:0000786 ... P06899 37460559
    819406 8hal:D (4.4) BS02 dna ? GO:0000786 ... P06899 37460559
    819407 8hal:E (4.4) BS01 dna ? GO:0000786 ... P68431 37460559
    819408 8hal:E (4.4) BS02 dna ? GO:0000786 ... P68431 37460559
    819409 8hal:F (4.4) BS01 dna ? GO:0000781 ... P62805 37460559
    819410 8hal:F (4.4) BS02 dna ? GO:0000781 ... P62805 37460559
    819411 8hal:G (4.4) BS01 dna ? GO:0000786 ... P04908 37460559
    819412 8hal:G (4.4) BS02 dna ? GO:0000786 ... P04908 37460559
    819413 8hal:H (4.4) BS01 dna ? GO:0000786 ... P06899 37460559
    819414 8hal:H (4.4) BS02 dna ? GO:0000786 ... P06899 37460559
    819415 8hal:K (4.4) BS01 dna 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92793 37460559
    819416 8hal:K (4.4) BS02 dna 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92793 37460559
    819417 8ham:A (4.5) BS01 dna ? GO:0000786 ... P68431 37460559
    819418 8ham:A (4.5) BS02 dna ? GO:0000786 ... P68431 37460559
    819419 8ham:B (4.5) BS01 dna ? GO:0000781 ... P62805 37460559
    819420 8ham:B (4.5) BS02 dna ? GO:0000781 ... P62805 37460559
    819421 8ham:C (4.5) BS01 dna ? GO:0000786 ... P04908 37460559
    819422 8ham:C (4.5) BS02 dna ? GO:0000786 ... P04908 37460559
    819423 8ham:D (4.5) BS01 dna ? GO:0000786 ... P06899 37460559
    819424 8ham:D (4.5) BS02 dna ? GO:0000786 ... P06899 37460559
    819425 8ham:E (4.5) BS01 dna ? GO:0000786 ... P68431 37460559
    819426 8ham:E (4.5) BS02 dna ? GO:0000786 ... P68431 37460559
    819427 8ham:F (4.5) BS01 dna ? GO:0000781 ... P62805 37460559
    819428 8ham:F (4.5) BS02 dna ? GO:0000781 ... P62805 37460559
    819429 8ham:G (4.5) BS01 dna ? GO:0000786 ... P04908 37460559
    819430 8ham:G (4.5) BS02 dna ? GO:0000786 ... P04908 37460559
    819431 8ham:H (4.5) BS01 dna ? GO:0000786 ... P06899 37460559
    819432 8ham:H (4.5) BS02 dna ? GO:0000786 ... P06899 37460559
    819433 8ham:K (4.5) BS01 dna 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92793 37460559
    819434 8ham:K (4.5) BS02 dna 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92793 37460559
    819435 8han:A (4.2) BS01 dna ? GO:0000786 ... P68431 37460559
    819436 8han:A (4.2) BS02 dna ? GO:0000786 ... P68431 37460559
    819437 8han:B (4.2) BS01 dna ? GO:0000781 ... P62805 37460559
    819438 8han:B (4.2) BS02 dna ? GO:0000781 ... P62805 37460559
    819439 8han:C (4.2) BS01 dna ? GO:0000786 ... P04908 37460559
    819440 8han:C (4.2) BS02 dna ? GO:0000786 ... P04908 37460559
    819441 8han:D (4.2) BS01 dna ? GO:0000786 ... P06899 37460559
    819442 8han:D (4.2) BS02 dna ? GO:0000786 ... P06899 37460559
    819443 8han:E (4.2) BS01 dna ? GO:0000786 ... P68431 37460559
    819444 8han:E (4.2) BS02 dna ? GO:0000786 ... P68431 37460559
    819445 8han:F (4.2) BS01 dna ? GO:0000781 ... P62805 37460559
    819446 8han:F (4.2) BS02 dna ? GO:0000781 ... P62805 37460559
    819447 8han:G (4.2) BS01 dna ? GO:0000786 ... P04908 37460559
    819448 8han:G (4.2) BS02 dna ? GO:0000786 ... P04908 37460559
    819449 8han:H (4.2) BS01 dna ? GO:0000786 ... P06899 37460559
    819450 8han:H (4.2) BS02 dna ? GO:0000786 ... P06899 37460559
    819451 8han:K (4.2) BS01 dna 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92793 37460559
    819452 8han:K (4.2) BS02 dna 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92793 37460559
    819453 8hap:A (2.2) BS01 NA7 1.2.1.79 GO:0008911 ... Q976X5 37227376
    819454 8hap:B (2.2) BS01 ATR 1.2.1.79 GO:0008911 ... Q976X5 37227376
    819455 8haq:A (2.27) BS01 L1N 2.7.10.2 GO:0004672 ... P12931 N/A
    819456 8haq:B (2.27) BS01 L1N 2.7.10.2 GO:0004672 ... P12931 N/A
    819457 8har:A (2.12) BS01 SAH ? GO:0003824 ... Q2L6E4 N/A
    819458 8har:B (2.12) BS01 SAH ? GO:0003824 ... Q2L6E4 N/A
    819459 8has:A (2.89) BS01 ATP ? GO:0005634 ... B4XT64 N/A
    819460 8has:B (2.89) BS01 ATP ? GO:0005634 ... B4XT64 N/A
    819461 8has:C (2.89) BS01 ATP ? GO:0005634 ... B4XT64 N/A
    819462 8has:D (2.89) BS01 ATP ? GO:0005634 ... B4XT64 N/A
    819463 8has:E (2.89) BS01 ATP ? GO:0005634 ... B4XT64 N/A
    819464 8has:F (2.89) BS01 ATP ? GO:0005634 ... B4XT64 N/A
    819465 8hau:A (3.02) BS01 ATP ? N/A A2XXI5 N/A
    819466 8hau:B (3.02) BS01 ATP ? N/A A2XXI5 N/A
    819467 8hau:C (3.02) BS01 ATP ? N/A A2XXI5 N/A
    819468 8hau:D (3.02) BS01 ATP ? N/A A2XXI5 N/A
    819469 8hau:E (3.02) BS01 ATP ? N/A A2XXI5 N/A
    819470 8hau:F (3.02) BS01 ATP ? N/A A2XXI5 N/A
    819471 8hav:A (2.1) BS01 GOL 3.1.4.3 GO:0004629 ... Q9SRQ7 36635324
    819472 8haw:A (2.1) BS01 CA 3.1.4.3 GO:0004629 ... Q9SRQ7 36635324
    819473 8haw:B (2.1) BS01 GOL 3.1.4.3 GO:0004629 ... Q9SRQ7 36635324
    819474 8haw:B (2.1) BS02 CA 3.1.4.3 GO:0004629 ... Q9SRQ7 36635324
    819475 8hay:A (2.74) BS01 KYL N/A GO:0006508 ... N/A 37535747
    819476 8hay:B (2.74) BS01 KYL N/A GO:0006508 ... N/A 37535747
    819477 8hay:C (2.74) BS01 KYL N/A GO:0006508 ... N/A 37535747
    819478 8hb0:A (2.9) BS01 peptide ? GO:0000017 ... P31639 38057552
    819479 8hb0:A (2.9) BS02 KZ3 ? GO:0000017 ... P31639 38057552
    819480 8hb0:A (2.9) BS03 NA ? GO:0000017 ... P31639 38057552
    819481 8hb2:A (3.06) BS01 MN 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    819482 8hb2:B (3.06) BS01 MN 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    819483 8hb2:B (3.06) BS02 AKG 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    819484 8hb2:C (3.06) BS01 MN 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    819485 8hb2:C (3.06) BS02 AKG 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    819486 8hb2:D (3.06) BS01 MN 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    819487 8hb5:A (2.6) BS01 CA ? N/A E1BHM0 37521780
    819488 8hb5:A (2.6) BS02 CA ? N/A E1BHM0 37521780
    819489 8hb5:A (2.6) BS03 CA ? N/A E1BHM0 37521780
    819490 8hb5:A (2.6) BS04 L6N ? N/A E1BHM0 37521780
    819491 8hb9:AAA (2.8) BS01 R1R 1.1.1.42 GO:0000287 ... O75874 37209613
    819492 8hb9:AAA (2.8) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 37209613
    819493 8hb9:BBB (2.8) BS01 R1R 1.1.1.42 GO:0000287 ... O75874 37209613
    819494 8hb9:BBB (2.8) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 37209613
    819495 8hb9:CCC (2.8) BS01 R1R 1.1.1.42 GO:0000287 ... O75874 37209613
    819496 8hb9:CCC (2.8) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 37209613
    819497 8hb9:DDD (2.8) BS01 R1R 1.1.1.42 GO:0000287 ... O75874 37209613
    819498 8hb9:DDD (2.8) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 37209613
    819499 8hbb:A (3.09) BS01 MN 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    819500 8hbb:B (3.09) BS01 MN 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    819501 8hbb:C (3.09) BS01 MN 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    819502 8hbb:D (3.09) BS01 MN 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    819503 8hbd:R (2.99) BS01 peptide 1.13.12.13 GO:0000122 ... P24530 36882417
    819504 8hbe:B (3.2) BS01 HEM 4.6.1.2 GO:0004016 ... Q02153 36972843
    819505 8hbf:A (3.1) BS01 G2P 4.6.1.2 GO:0004383 ... Q02108 36972843
    819506 8hbf:A (3.1) BS02 MG 4.6.1.2 GO:0004383 ... Q02108 36972843
    819507 8hbf:A (3.1) BS03 MG 4.6.1.2 GO:0004383 ... Q02108 36972843
    819508 8hbf:A (3.1) BS04 GZO 4.6.1.2 GO:0004383 ... Q02108 36972843
    819509 8hbf:B (3.1) BS01 G2P 4.6.1.2 GO:0004016 ... Q02153 36972843
    819510 8hbf:B (3.1) BS02 HEM 4.6.1.2 GO:0004016 ... Q02153 36972843
    819511 8hbf:B (3.1) BS03 GZO 4.6.1.2 GO:0004016 ... Q02153 36972843
    819512 8hbh:A (3.1) BS01 MG 4.6.1.2 GO:0004383 ... Q02108 36972843
    819513 8hbh:A (3.1) BS02 MG 4.6.1.2 GO:0004383 ... Q02108 36972843
    819514 8hbh:A (3.1) BS03 G2P 4.6.1.2 GO:0004383 ... Q02108 36972843
    819515 8hbh:B (3.1) BS01 G2P 4.6.1.2 GO:0004016 ... Q02153 36972843
    819516 8hbh:B (3.1) BS02 HEM 4.6.1.2 GO:0004016 ... Q02153 36972843
    819517 8hbk:A (1.8) BS01 7YY 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37696289
    819518 8hbm:A (3.3) BS01 dna ? GO:0003700 ... P19793 37287811
    819519 8hbm:A (3.3) BS02 dna ? GO:0003700 ... P19793 37287811
    819520 8hbm:A (3.3) BS03 ZN ? GO:0003700 ... P19793 37287811
    819521 8hbm:A (3.3) BS04 ZN ? GO:0003700 ... P19793 37287811
    819522 8hbm:B (3.3) BS01 dna ? GO:0003700 ... Q96RI1 37287811
    819523 8hbm:B (3.3) BS02 dna ? GO:0003700 ... Q96RI1 37287811
    819524 8hbm:B (3.3) BS03 ZN ? GO:0003700 ... Q96RI1 37287811
    819525 8hbm:B (3.3) BS04 ZN ? GO:0003700 ... Q96RI1 37287811
    819526 8hbm:E (3.3) BS01 dna ? GO:0003700 ... P19793 37287811
    819527 8hbm:E (3.3) BS02 dna ? GO:0003700 ... P19793 37287811
    819528 8hbm:E (3.3) BS03 ZN ? GO:0003700 ... P19793 37287811
    819529 8hbm:E (3.3) BS04 ZN ? GO:0003700 ... P19793 37287811
    819530 8hbm:F (3.3) BS01 dna ? GO:0003700 ... Q96RI1 37287811
    819531 8hbm:F (3.3) BS02 dna ? GO:0003700 ... Q96RI1 37287811
    819532 8hbm:F (3.3) BS03 ZN ? GO:0003700 ... Q96RI1 37287811
    819533 8hbm:F (3.3) BS04 ZN ? GO:0003700 ... Q96RI1 37287811
    819534 8hbt:A (1.96) BS01 KZO N/A N/A N/A 37749089
    819535 8hbw:A (2.57) BS01 ATP ? GO:0002024 ... P25874 37336486
    819536 8hc0:A (2.9) BS01 peptide ? N/A Q5T601 36716818
    819537 8hc0:A (2.9) BS02 MAN ? N/A Q5T601 36716818
    819538 8hcc:A (2.0) BS01 AMP 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819539 8hcc:A (2.0) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819540 8hcc:B (2.0) BS01 AMP 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819541 8hcc:B (2.0) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819542 8hcc:C (2.0) BS01 AMP 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819543 8hcc:C (2.0) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819544 8hcc:D (2.0) BS01 AMP 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819545 8hcc:D (2.0) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819546 8hcd:B (2.0) BS01 MG 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819547 8hcd:B (2.0) BS02 DCM 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819548 8hcd:C (2.0) BS01 DGP 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819549 8hcd:C (2.0) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819550 8hcd:D (2.0) BS01 DCM 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819551 8hcd:D (2.0) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819552 8hcd:E (2.0) BS01 DCM 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819553 8hcd:E (2.0) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819554 8hcd:E (2.0) BS03 CO 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819555 8hce:B (1.501) BS01 C5P 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819556 8hcf:B (1.6) BS01 U5P 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819557 8hcg:A (1.799) BS01 D5M 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819558 8hcg:A (1.799) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819559 8hch:A (2.0) BS01 URI 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819560 8hch:B (2.0) BS01 URI 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819561 8hch:C (2.0) BS01 URI 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819562 8hch:D (2.0) BS01 URI 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    819563 8hcj:A (2.566) BS01 CA 3.2.1.37 GO:0004553 ... F0S5E9 39708861
    819564 8hcj:B (2.566) BS01 CA 3.2.1.37 GO:0004553 ... F0S5E9 39708861
    819565 8hcj:C (2.566) BS01 CA 3.2.1.37 GO:0004553 ... F0S5E9 39708861
    819566 8hcj:D (2.566) BS01 CA 3.2.1.37 GO:0004553 ... F0S5E9 39708861
    819567 8hcj:E (2.566) BS01 CA 3.2.1.37 GO:0004553 ... F0S5E9 39708861
    819568 8hcj:F (2.566) BS01 CA 3.2.1.37 GO:0004553 ... F0S5E9 39708861
    819569 8hcj:G (2.566) BS01 CA 3.2.1.37 GO:0004553 ... F0S5E9 39708861
    819570 8hcj:H (2.566) BS01 CA 3.2.1.37 GO:0004553 ... F0S5E9 39708861
    819571 8hck:A (2.0) BS01 P1Z ? N/A O00560 36834839
    819572 8hcl:A (1.99) BS01 dna ? GO:0000976 ... A8E5I1 39058321
    819573 8hcl:A (1.99) BS02 dna ? GO:0000976 ... A8E5I1 39058321
    819574 8hcl:B (1.99) BS01 dna ? GO:0000976 ... A8E5I1 39058321
    819575 8hcl:B (1.99) BS02 dna ? GO:0000976 ... A8E5I1 39058321
    819576 8hcm:A (2.59) BS01 dna ? GO:0000976 ... Q1RLP9 39058321
    819577 8hcm:A (2.59) BS02 dna ? GO:0000976 ... Q1RLP9 39058321
    819578 8hcq:R (3.01) BS01 peptide 1.13.12.13 GO:0004930 ... P25101 36882417
    819579 8hcr:A (-1.00) BS01 FES ? GO:0004497 ... P9WH23 37158740
    819580 8hcr:B (-1.00) BS01 HEM 7.1.1.8 GO:0005886 ... P9WP37 37158740
    819581 8hcr:B (-1.00) BS02 HEM 7.1.1.8 GO:0005886 ... P9WP37 37158740
    819582 8hcr:C (-1.00) BS01 HEC 7.1.1.8 GO:0004129 ... P9WP35 37158740
    819583 8hcr:C (-1.00) BS02 HEC 7.1.1.8 GO:0004129 ... P9WP35 37158740
    819584 8hcr:F (-1.00) BS01 HEA 7.1.1.9 GO:0004129 ... P9WP71 37158740
    819585 8hcr:F (-1.00) BS02 HEA 7.1.1.9 GO:0004129 ... P9WP71 37158740
    819586 8hcr:M (-1.00) BS01 FES ? GO:0004497 ... P9WH23 37158740
    819587 8hcr:N (-1.00) BS01 HEM 7.1.1.8 GO:0005886 ... P9WP37 37158740
    819588 8hcr:N (-1.00) BS02 HEM 7.1.1.8 GO:0005886 ... P9WP37 37158740
    819589 8hcr:O (-1.00) BS01 HEC 7.1.1.8 GO:0004129 ... P9WP35 37158740
    819590 8hcr:O (-1.00) BS02 HEC 7.1.1.8 GO:0004129 ... P9WP35 37158740
    819591 8hcr:R (-1.00) BS01 HEA 7.1.1.9 GO:0004129 ... P9WP71 37158740
    819592 8hcr:R (-1.00) BS02 HEA 7.1.1.9 GO:0004129 ... P9WP71 37158740
    819593 8hct:A (2.26) BS01 FE 1.16.3.1 GO:0005737 ... A0A8F4Y4C2 36904538
    819594 8hct:A (2.26) BS02 FE 1.16.3.1 GO:0005737 ... A0A8F4Y4C2 36904538
    819595 8hct:A (2.26) BS03 CU 1.16.3.1 GO:0005737 ... A0A8F4Y4C2 36904538
    819596 8hcx:C (3.5) BS01 peptide 1.13.12.13 GO:0000122 ... P24530 36882417
    819597 8hd0:A (3.11) BS01 ATP ? GO:0000917 ... P0A9R7 N/A
    819598 8hd0:A (3.11) BS02 ATP ? GO:0000917 ... P0A9R7 N/A
    819599 8hd0:B (3.11) BS01 ATP ? GO:0000917 ... P0A9R7 N/A
    819600 8hd0:B (3.11) BS02 ATP ? GO:0000917 ... P0A9R7 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).