SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    821001 8hkz:AL3P (4.78) BS01 rna ? GO:0003723 ... Q4JB40 37604686
    821002 8hkz:AL4P (4.78) BS01 rna ? GO:0003735 ... Q4JB41 37604686
    821003 8hkz:AL5P (4.78) BS01 rna ? GO:0000049 ... P41202 37604686
    821004 8hkz:AL5P (4.78) BS02 rna ? GO:0000049 ... P41202 37604686
    821005 8hkz:AL6P (4.78) BS01 rna ? GO:0002181 ... O05637 37604686
    821006 8hkz:ALX0 (4.78) BS01 rna ? GO:0003735 ... P38613 37604686
    821007 8hkz:ALX0 (4.78) BS02 rna ? GO:0003735 ... P38613 37604686
    821008 8hkz:AS2P (4.78) BS01 rna ? GO:0003735 ... P39478 37604686
    821009 8hkz:AS2P (4.78) BS02 UNK ? GO:0003735 ... P39478 37604686
    821010 8hkz:AS2P (4.78) BS03 UNK ? GO:0003735 ... P39478 37604686
    821011 8hkz:AS2P (4.78) BS04 UNK ? GO:0003735 ... P39478 37604686
    821012 8hkz:AS3P (4.78) BS01 rna ? GO:0003676 ... Q4JB46 37604686
    821013 8hkz:AS4E (4.78) BS01 rna ? GO:0003723 ... O05634 37604686
    821014 8hkz:AS4P (4.78) BS01 rna ? GO:0003723 ... P39467 37604686
    821015 8hkz:AS5P (4.78) BS01 rna ? GO:0003723 ... O05641 37604686
    821016 8hkz:AS5P (4.78) BS02 UNK ? GO:0003723 ... O05641 37604686
    821017 8hkz:AS5P (4.78) BS03 UNK ? GO:0003723 ... O05641 37604686
    821018 8hkz:AS5P (4.78) BS04 UNK ? GO:0003723 ... O05641 37604686
    821019 8hkz:AS6E (4.78) BS01 rna ? GO:0003735 ... Q4JAI1 37604686
    821020 8hkz:AS7P (4.78) BS01 rna ? GO:0003723 ... P17198 37604686
    821021 8hkz:AS7P (4.78) BS02 rna ? GO:0003723 ... P17198 37604686
    821022 8hkz:AS8E (4.78) BS01 rna ? GO:0003735 ... Q4JAP5 37604686
    821023 8hkz:AS8E (4.78) BS02 rna ? GO:0003735 ... Q4JAP5 37604686
    821024 8hkz:AS8P (4.78) BS01 rna ? GO:0003735 ... O05636 37604686
    821025 8hkz:AS9P (4.78) BS01 rna ? GO:0000462 ... P39468 37604686
    821026 8hkz:L10E (4.78) BS01 rna ? GO:0003735 ... Q4JC84 37604686
    821027 8hkz:L10E (4.78) BS02 rna ? GO:0003735 ... Q4JC84 37604686
    821028 8hkz:L13P (4.78) BS01 rna ? GO:0003729 ... P39473 37604686
    821029 8hkz:L141 (4.78) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    821030 8hkz:L142 (4.78) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    821031 8hkz:L14P (4.78) BS01 rna ? GO:0003735 ... Q4JB50 37604686
    821032 8hkz:L14P (4.78) BS02 rna ? GO:0003735 ... Q4JB50 37604686
    821033 8hkz:L15E (4.78) BS01 rna ? GO:0003735 ... Q4JB20 37604686
    821034 8hkz:L15P (4.78) BS01 rna ? GO:0003735 ... O05643 37604686
    821035 8hkz:L18E (4.78) BS01 rna ? GO:0003735 ... P39474 37604686
    821036 8hkz:L18P (4.78) BS01 rna ? GO:0000027 ... O05640 37604686
    821037 8hkz:L18P (4.78) BS02 rna ? GO:0000027 ... O05640 37604686
    821038 8hkz:L19E (4.78) BS01 rna ? GO:0003723 ... O05639 37604686
    821039 8hkz:L21E (4.78) BS01 rna ? GO:0003735 ... Q4JB11 37604686
    821040 8hkz:L21E (4.78) BS02 rna ? GO:0003735 ... Q4JB11 37604686
    821041 8hkz:L22P (4.78) BS01 rna ? GO:0002181 ... Q4JB45 37604686
    821042 8hkz:L23P (4.78) BS01 rna ? GO:0003735 ... Q4JB42 37604686
    821043 8hkz:L24E (4.78) BS01 rna ? GO:0003735 ... Q4JAV2 37604686
    821044 8hkz:L24P (4.78) BS01 rna ? GO:0003723 ... O05633 37604686
    821045 8hkz:L29P (4.78) BS01 rna ? GO:0003735 ... Q4JB47 37604686
    821046 8hkz:L30E (4.78) BS01 rna ? GO:0003723 ... P11522 37604686
    821047 8hkz:L30P (4.78) BS01 rna ? GO:0000463 ... O05642 37604686
    821048 8hkz:L30P (4.78) BS02 rna ? GO:0000463 ... O05642 37604686
    821049 8hkz:L31E (4.78) BS01 rna ? GO:0003735 ... P38618 37604686
    821050 8hkz:L32E (4.78) BS01 rna ? GO:0003735 ... O05638 37604686
    821051 8hkz:L34E (4.78) BS01 rna ? GO:0003735 ... O05981 37604686
    821052 8hkz:L37A (4.78) BS01 rna ? GO:0003735 ... Q4JB29 37604686
    821053 8hkz:L37E (4.78) BS01 rna ? GO:0003735 ... Q4JAZ9 37604686
    821054 8hkz:L39E (4.78) BS01 rna ? GO:0003735 ... P13005 37604686
    821055 8hkz:L40E (4.78) BS01 rna ? GO:0003735 ... Q4JAP0 37604686
    821056 8hkz:L44E (4.78) BS01 rna ? GO:0003735 ... Q4J9B2 37604686
    821057 8hkz:L44E (4.78) BS02 rna ? GO:0003735 ... Q4J9B2 37604686
    821058 8hkz:L45A (4.78) BS01 rna ? N/A Q4J9G6 37604686
    821059 8hkz:L46A (4.78) BS01 rna ? N/A Q4J953 37604686
    821060 8hkz:L47A (4.78) BS01 rna ? N/A F2Z6C4 37604686
    821061 8hkz:L7A1 (4.78) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    821062 8hkz:L7A2 (4.78) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    821063 8hkz:S10P (4.78) BS01 rna ? GO:0000049 ... P17199 37604686
    821064 8hkz:S11P (4.78) BS01 rna ? GO:0003735 ... P39469 37604686
    821065 8hkz:S12P (4.78) BS01 rna ? GO:0003735 ... P11524 37604686
    821066 8hkz:S13P (4.78) BS01 rna ? GO:0003676 ... P39470 37604686
    821067 8hkz:S14P (4.78) BS01 rna ? GO:0002181 ... O05635 37604686
    821068 8hkz:S15P (4.78) BS01 rna ? GO:0003735 ... Q4JAI3 37604686
    821069 8hkz:S17E (4.78) BS01 rna ? GO:0003735 ... Q4JAX5 37604686
    821070 8hkz:S17P (4.78) BS01 rna ? GO:0003735 ... Q4JB49 37604686
    821071 8hkz:S19E (4.78) BS01 rna ? GO:0000028 ... Q4J8U1 37604686
    821072 8hkz:S19P (4.78) BS01 rna ? GO:0003723 ... Q4JB44 37604686
    821073 8hkz:S24E (4.78) BS01 rna ? GO:0003735 ... Q4JAF9 37604686
    821074 8hkz:S27A (4.78) BS01 rna ? GO:0003735 ... Q4JAG0 37604686
    821075 8hkz:S27E (4.78) BS01 rna ? GO:0003735 ... Q4J9B1 37604686
    821076 8hkz:S28E (4.78) BS01 rna ? GO:0003735 ... Q4JAV1 37604686
    821077 8hkz:S3AE (4.78) BS01 rna ? GO:0003735 ... Q4JB17 37604686
    821078 8hkz:SL7A (4.78) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    821079 8hl1:AEFG (3.93) BS01 rna ? GO:0003746 ... P23112 37604686
    821080 8hl1:AEFG (3.93) BS02 rna ? GO:0003746 ... P23112 37604686
    821081 8hl1:AEFG (3.93) BS03 rna ? GO:0003746 ... P23112 37604686
    821082 8hl1:AEFG (3.93) BS04 GNP ? GO:0003746 ... P23112 37604686
    821083 8hl1:AL1P (3.93) BS01 rna ? GO:0000049 ... P35024 37604686
    821084 8hl1:AL2P (3.93) BS01 rna ? GO:0002181 ... Q4JB43 37604686
    821085 8hl1:AL3P (3.93) BS01 rna ? GO:0003723 ... Q4JB40 37604686
    821086 8hl1:AL4P (3.93) BS01 rna ? GO:0003735 ... Q4JB41 37604686
    821087 8hl1:AL5P (3.93) BS01 rna ? GO:0000049 ... P41202 37604686
    821088 8hl1:AL5P (3.93) BS02 rna ? GO:0000049 ... P41202 37604686
    821089 8hl1:AL6P (3.93) BS01 rna ? GO:0002181 ... O05637 37604686
    821090 8hl1:ALX0 (3.93) BS01 rna ? GO:0003735 ... P38613 37604686
    821091 8hl1:AS2P (3.93) BS01 rna ? GO:0003735 ... P39478 37604686
    821092 8hl1:AS2P (3.93) BS02 UNK ? GO:0003735 ... P39478 37604686
    821093 8hl1:AS3P (3.93) BS01 rna ? GO:0003676 ... Q4JB46 37604686
    821094 8hl1:AS4E (3.93) BS01 rna ? GO:0003723 ... O05634 37604686
    821095 8hl1:AS4P (3.93) BS01 rna ? GO:0003723 ... P39467 37604686
    821096 8hl1:AS5P (3.93) BS01 rna ? GO:0003723 ... O05641 37604686
    821097 8hl1:AS5P (3.93) BS02 UNK ? GO:0003723 ... O05641 37604686
    821098 8hl1:AS6E (3.93) BS01 rna ? GO:0003735 ... Q4JAI1 37604686
    821099 8hl1:AS7P (3.93) BS01 rna ? GO:0003723 ... P17198 37604686
    821100 8hl1:AS8E (3.93) BS01 rna ? GO:0003735 ... Q4JAP5 37604686
    821101 8hl1:AS8E (3.93) BS02 rna ? GO:0003735 ... Q4JAP5 37604686
    821102 8hl1:AS8P (3.93) BS01 rna ? GO:0003735 ... O05636 37604686
    821103 8hl1:AS9P (3.93) BS01 rna ? GO:0000462 ... P39468 37604686
    821104 8hl1:L10E (3.93) BS01 rna ? GO:0003735 ... Q4JC84 37604686
    821105 8hl1:L10E (3.93) BS02 rna ? GO:0003735 ... Q4JC84 37604686
    821106 8hl1:L10E (3.93) BS03 rna ? GO:0003735 ... Q4JC84 37604686
    821107 8hl1:L13P (3.93) BS01 rna ? GO:0003729 ... P39473 37604686
    821108 8hl1:L141 (3.93) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    821109 8hl1:L142 (3.93) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    821110 8hl1:L14P (3.93) BS01 rna ? GO:0003735 ... Q4JB50 37604686
    821111 8hl1:L15E (3.93) BS01 rna ? GO:0003735 ... Q4JB20 37604686
    821112 8hl1:L15P (3.93) BS01 rna ? GO:0003735 ... O05643 37604686
    821113 8hl1:L18E (3.93) BS01 rna ? GO:0003735 ... P39474 37604686
    821114 8hl1:L18P (3.93) BS01 rna ? GO:0000027 ... O05640 37604686
    821115 8hl1:L18P (3.93) BS02 rna ? GO:0000027 ... O05640 37604686
    821116 8hl1:L19E (3.93) BS01 rna ? GO:0003723 ... O05639 37604686
    821117 8hl1:L21E (3.93) BS01 rna ? GO:0003735 ... Q4JB11 37604686
    821118 8hl1:L21E (3.93) BS02 rna ? GO:0003735 ... Q4JB11 37604686
    821119 8hl1:L22P (3.93) BS01 rna ? GO:0002181 ... Q4JB45 37604686
    821120 8hl1:L23P (3.93) BS01 rna ? GO:0003735 ... Q4JB42 37604686
    821121 8hl1:L24E (3.93) BS01 rna ? GO:0003735 ... Q4JAV2 37604686
    821122 8hl1:L24P (3.93) BS01 rna ? GO:0003723 ... O05633 37604686
    821123 8hl1:L29P (3.93) BS01 rna ? GO:0003735 ... Q4JB47 37604686
    821124 8hl1:L30E (3.93) BS01 rna ? GO:0003723 ... P11522 37604686
    821125 8hl1:L30P (3.93) BS01 rna ? GO:0000463 ... O05642 37604686
    821126 8hl1:L31E (3.93) BS01 rna ? GO:0003735 ... P38618 37604686
    821127 8hl1:L32E (3.93) BS01 rna ? GO:0003735 ... O05638 37604686
    821128 8hl1:L34E (3.93) BS01 rna ? GO:0003735 ... O05981 37604686
    821129 8hl1:L37A (3.93) BS01 rna ? GO:0003735 ... Q4JB29 37604686
    821130 8hl1:L37E (3.93) BS01 rna ? GO:0003735 ... Q4JAZ9 37604686
    821131 8hl1:L39E (3.93) BS01 rna ? GO:0003735 ... P13005 37604686
    821132 8hl1:L40E (3.93) BS01 rna ? GO:0003735 ... Q4JAP0 37604686
    821133 8hl1:L44E (3.93) BS01 rna ? GO:0003735 ... Q4J9B2 37604686
    821134 8hl1:L44E (3.93) BS02 rna ? GO:0003735 ... Q4J9B2 37604686
    821135 8hl1:L45A (3.93) BS01 rna ? N/A Q4J9G6 37604686
    821136 8hl1:L46A (3.93) BS01 rna ? N/A Q4J953 37604686
    821137 8hl1:L47A (3.93) BS01 rna ? N/A F2Z6C4 37604686
    821138 8hl1:L7A1 (3.93) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    821139 8hl1:L7A2 (3.93) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    821140 8hl1:S10P (3.93) BS01 rna ? GO:0000049 ... P17199 37604686
    821141 8hl1:S11P (3.93) BS01 rna ? GO:0003735 ... P39469 37604686
    821142 8hl1:S12P (3.93) BS01 rna ? GO:0003735 ... P11524 37604686
    821143 8hl1:S13P (3.93) BS01 rna ? GO:0003676 ... P39470 37604686
    821144 8hl1:S14P (3.93) BS01 rna ? GO:0002181 ... O05635 37604686
    821145 8hl1:S15P (3.93) BS01 rna ? GO:0003735 ... Q4JAI3 37604686
    821146 8hl1:S15P (3.93) BS02 rna ? GO:0003735 ... Q4JAI3 37604686
    821147 8hl1:S17E (3.93) BS01 rna ? GO:0003735 ... Q4JAX5 37604686
    821148 8hl1:S17P (3.93) BS01 rna ? GO:0003735 ... Q4JB49 37604686
    821149 8hl1:S19E (3.93) BS01 rna ? GO:0000028 ... Q4J8U1 37604686
    821150 8hl1:S19P (3.93) BS01 rna ? GO:0003723 ... Q4JB44 37604686
    821151 8hl1:S24E (3.93) BS01 rna ? GO:0003735 ... Q4JAF9 37604686
    821152 8hl1:S27A (3.93) BS01 rna ? GO:0003735 ... Q4JAG0 37604686
    821153 8hl1:S27E (3.93) BS01 rna ? GO:0003735 ... Q4J9B1 37604686
    821154 8hl1:S28E (3.93) BS01 rna ? GO:0003735 ... Q4JAV1 37604686
    821155 8hl1:S3AE (3.93) BS01 rna ? GO:0003735 ... Q4JB17 37604686
    821156 8hl1:SL7A (3.93) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    821157 8hl2:AEFG (4.1) BS01 rna ? GO:0003746 ... P23112 37604686
    821158 8hl2:AEFG (4.1) BS02 rna ? GO:0003746 ... P23112 37604686
    821159 8hl2:AEFG (4.1) BS03 rna ? GO:0003746 ... P23112 37604686
    821160 8hl2:AEFG (4.1) BS04 GNP ? GO:0003746 ... P23112 37604686
    821161 8hl2:AL1P (4.1) BS01 rna ? GO:0000049 ... P35024 37604686
    821162 8hl2:AL1P (4.1) BS02 rna ? GO:0000049 ... P35024 37604686
    821163 8hl2:AL2P (4.1) BS01 rna ? GO:0002181 ... Q4JB43 37604686
    821164 8hl2:AL3P (4.1) BS01 rna ? GO:0003723 ... Q4JB40 37604686
    821165 8hl2:AL4P (4.1) BS01 rna ? GO:0003735 ... Q4JB41 37604686
    821166 8hl2:AL5P (4.1) BS01 rna ? GO:0000049 ... P41202 37604686
    821167 8hl2:AL5P (4.1) BS02 rna ? GO:0000049 ... P41202 37604686
    821168 8hl2:AL6P (4.1) BS01 rna ? GO:0002181 ... O05637 37604686
    821169 8hl2:ALX0 (4.1) BS01 rna ? GO:0003735 ... P38613 37604686
    821170 8hl2:AS2P (4.1) BS01 rna ? GO:0003735 ... P39478 37604686
    821171 8hl2:AS2P (4.1) BS02 UNK ? GO:0003735 ... P39478 37604686
    821172 8hl2:AS3P (4.1) BS01 rna ? GO:0003676 ... Q4JB46 37604686
    821173 8hl2:AS4E (4.1) BS01 rna ? GO:0003723 ... O05634 37604686
    821174 8hl2:AS4P (4.1) BS01 rna ? GO:0003723 ... P39467 37604686
    821175 8hl2:AS5P (4.1) BS01 rna ? GO:0003723 ... O05641 37604686
    821176 8hl2:AS5P (4.1) BS02 UNK ? GO:0003723 ... O05641 37604686
    821177 8hl2:AS6E (4.1) BS01 rna ? GO:0003735 ... Q4JAI1 37604686
    821178 8hl2:AS7P (4.1) BS01 rna ? GO:0003723 ... P17198 37604686
    821179 8hl2:AS8E (4.1) BS01 rna ? GO:0003735 ... Q4JAP5 37604686
    821180 8hl2:AS8E (4.1) BS02 rna ? GO:0003735 ... Q4JAP5 37604686
    821181 8hl2:AS8P (4.1) BS01 rna ? GO:0003735 ... O05636 37604686
    821182 8hl2:AS9P (4.1) BS01 rna ? GO:0000462 ... P39468 37604686
    821183 8hl2:L10E (4.1) BS01 rna ? GO:0003735 ... Q4JC84 37604686
    821184 8hl2:L10E (4.1) BS02 rna ? GO:0003735 ... Q4JC84 37604686
    821185 8hl2:L10E (4.1) BS03 rna ? GO:0003735 ... Q4JC84 37604686
    821186 8hl2:L13P (4.1) BS01 rna ? GO:0003729 ... P39473 37604686
    821187 8hl2:L141 (4.1) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    821188 8hl2:L142 (4.1) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    821189 8hl2:L14P (4.1) BS01 rna ? GO:0003735 ... Q4JB50 37604686
    821190 8hl2:L15E (4.1) BS01 rna ? GO:0003735 ... Q4JB20 37604686
    821191 8hl2:L15P (4.1) BS01 rna ? GO:0003735 ... O05643 37604686
    821192 8hl2:L18E (4.1) BS01 rna ? GO:0003735 ... P39474 37604686
    821193 8hl2:L18P (4.1) BS01 rna ? GO:0000027 ... O05640 37604686
    821194 8hl2:L18P (4.1) BS02 rna ? GO:0000027 ... O05640 37604686
    821195 8hl2:L19E (4.1) BS01 rna ? GO:0003723 ... O05639 37604686
    821196 8hl2:L21E (4.1) BS01 rna ? GO:0003735 ... Q4JB11 37604686
    821197 8hl2:L21E (4.1) BS02 rna ? GO:0003735 ... Q4JB11 37604686
    821198 8hl2:L22P (4.1) BS01 rna ? GO:0002181 ... Q4JB45 37604686
    821199 8hl2:L23P (4.1) BS01 rna ? GO:0003735 ... Q4JB42 37604686
    821200 8hl2:L24E (4.1) BS01 rna ? GO:0003735 ... Q4JAV2 37604686

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).