SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    821201 8hl2:L24P (4.1) BS01 rna ? GO:0003723 ... O05633 37604686
    821202 8hl2:L29P (4.1) BS01 rna ? GO:0003735 ... Q4JB47 37604686
    821203 8hl2:L30E (4.1) BS01 rna ? GO:0003723 ... P11522 37604686
    821204 8hl2:L30P (4.1) BS01 rna ? GO:0000463 ... O05642 37604686
    821205 8hl2:L31E (4.1) BS01 rna ? GO:0003735 ... P38618 37604686
    821206 8hl2:L32E (4.1) BS01 rna ? GO:0003735 ... O05638 37604686
    821207 8hl2:L34E (4.1) BS01 rna ? GO:0003735 ... O05981 37604686
    821208 8hl2:L37A (4.1) BS01 rna ? GO:0003735 ... Q4JB29 37604686
    821209 8hl2:L37E (4.1) BS01 rna ? GO:0003735 ... Q4JAZ9 37604686
    821210 8hl2:L39E (4.1) BS01 rna ? GO:0003735 ... P13005 37604686
    821211 8hl2:L40E (4.1) BS01 rna ? GO:0003735 ... Q4JAP0 37604686
    821212 8hl2:L44E (4.1) BS01 rna ? GO:0003735 ... Q4J9B2 37604686
    821213 8hl2:L44E (4.1) BS02 rna ? GO:0003735 ... Q4J9B2 37604686
    821214 8hl2:L45A (4.1) BS01 rna ? N/A Q4J9G6 37604686
    821215 8hl2:L46A (4.1) BS01 rna ? N/A Q4J953 37604686
    821216 8hl2:L47A (4.1) BS01 rna ? N/A F2Z6C4 37604686
    821217 8hl2:L7A1 (4.1) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    821218 8hl2:L7A2 (4.1) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    821219 8hl2:S10P (4.1) BS01 rna ? GO:0000049 ... P17199 37604686
    821220 8hl2:S11P (4.1) BS01 rna ? GO:0003735 ... P39469 37604686
    821221 8hl2:S12P (4.1) BS01 rna ? GO:0003735 ... P11524 37604686
    821222 8hl2:S13P (4.1) BS01 rna ? GO:0003676 ... P39470 37604686
    821223 8hl2:S14P (4.1) BS01 rna ? GO:0002181 ... O05635 37604686
    821224 8hl2:S15P (4.1) BS01 rna ? GO:0003735 ... Q4JAI3 37604686
    821225 8hl2:S15P (4.1) BS02 rna ? GO:0003735 ... Q4JAI3 37604686
    821226 8hl2:S17E (4.1) BS01 rna ? GO:0003735 ... Q4JAX5 37604686
    821227 8hl2:S17P (4.1) BS01 rna ? GO:0003735 ... Q4JB49 37604686
    821228 8hl2:S19E (4.1) BS01 rna ? GO:0000028 ... Q4J8U1 37604686
    821229 8hl2:S19P (4.1) BS01 rna ? GO:0003723 ... Q4JB44 37604686
    821230 8hl2:S24E (4.1) BS01 rna ? GO:0003735 ... Q4JAF9 37604686
    821231 8hl2:S27A (4.1) BS01 rna ? GO:0003735 ... Q4JAG0 37604686
    821232 8hl2:S27E (4.1) BS01 rna ? GO:0003735 ... Q4J9B1 37604686
    821233 8hl2:S28E (4.1) BS01 rna ? GO:0003735 ... Q4JAV1 37604686
    821234 8hl2:S3AE (4.1) BS01 rna ? GO:0003735 ... Q4JB17 37604686
    821235 8hl2:SL7A (4.1) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    821236 8hl3:AEFG (4.8) BS01 rna ? GO:0003746 ... P23112 37604686
    821237 8hl3:AEFG (4.8) BS02 rna ? GO:0003746 ... P23112 37604686
    821238 8hl3:AEFG (4.8) BS03 GNP ? GO:0003746 ... P23112 37604686
    821239 8hl3:AL1P (4.8) BS01 rna ? GO:0000049 ... P35024 37604686
    821240 8hl3:AL2P (4.8) BS01 rna ? GO:0002181 ... Q4JB43 37604686
    821241 8hl3:AL3P (4.8) BS01 rna ? GO:0003723 ... Q4JB40 37604686
    821242 8hl3:AL4P (4.8) BS01 rna ? GO:0003735 ... Q4JB41 37604686
    821243 8hl3:AL5P (4.8) BS01 rna ? GO:0000049 ... P41202 37604686
    821244 8hl3:AL5P (4.8) BS02 rna ? GO:0000049 ... P41202 37604686
    821245 8hl3:AL6P (4.8) BS01 rna ? GO:0002181 ... O05637 37604686
    821246 8hl3:ALX0 (4.8) BS01 rna ? GO:0003735 ... P38613 37604686
    821247 8hl3:AS2P (4.8) BS01 rna ? GO:0003735 ... P39478 37604686
    821248 8hl3:AS3P (4.8) BS01 rna ? GO:0003676 ... Q4JB46 37604686
    821249 8hl3:AS4E (4.8) BS01 rna ? GO:0003723 ... O05634 37604686
    821250 8hl3:AS4P (4.8) BS01 rna ? GO:0003723 ... P39467 37604686
    821251 8hl3:AS5P (4.8) BS01 rna ? GO:0003723 ... O05641 37604686
    821252 8hl3:AS5P (4.8) BS02 UNK ? GO:0003723 ... O05641 37604686
    821253 8hl3:AS5P (4.8) BS03 UNK ? GO:0003723 ... O05641 37604686
    821254 8hl3:AS5P (4.8) BS04 UNK ? GO:0003723 ... O05641 37604686
    821255 8hl3:AS6E (4.8) BS01 rna ? GO:0003735 ... Q4JAI1 37604686
    821256 8hl3:AS7P (4.8) BS01 rna ? GO:0003723 ... P17198 37604686
    821257 8hl3:AS8E (4.8) BS01 rna ? GO:0003735 ... Q4JAP5 37604686
    821258 8hl3:AS8E (4.8) BS02 rna ? GO:0003735 ... Q4JAP5 37604686
    821259 8hl3:AS8P (4.8) BS01 rna ? GO:0003735 ... O05636 37604686
    821260 8hl3:AS9P (4.8) BS01 rna ? GO:0000462 ... P39468 37604686
    821261 8hl3:L10E (4.8) BS01 rna ? GO:0003735 ... Q4JC84 37604686
    821262 8hl3:L10E (4.8) BS02 rna ? GO:0003735 ... Q4JC84 37604686
    821263 8hl3:L13P (4.8) BS01 rna ? GO:0003729 ... P39473 37604686
    821264 8hl3:L141 (4.8) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    821265 8hl3:L142 (4.8) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    821266 8hl3:L14P (4.8) BS01 rna ? GO:0003735 ... Q4JB50 37604686
    821267 8hl3:L14P (4.8) BS02 rna ? GO:0003735 ... Q4JB50 37604686
    821268 8hl3:L15E (4.8) BS01 rna ? GO:0003735 ... Q4JB20 37604686
    821269 8hl3:L15P (4.8) BS01 rna ? GO:0003735 ... O05643 37604686
    821270 8hl3:L18E (4.8) BS01 rna ? GO:0003735 ... P39474 37604686
    821271 8hl3:L18P (4.8) BS01 rna ? GO:0000027 ... O05640 37604686
    821272 8hl3:L18P (4.8) BS02 rna ? GO:0000027 ... O05640 37604686
    821273 8hl3:L19E (4.8) BS01 rna ? GO:0003723 ... O05639 37604686
    821274 8hl3:L21E (4.8) BS01 rna ? GO:0003735 ... Q4JB11 37604686
    821275 8hl3:L21E (4.8) BS02 rna ? GO:0003735 ... Q4JB11 37604686
    821276 8hl3:L22P (4.8) BS01 rna ? GO:0002181 ... Q4JB45 37604686
    821277 8hl3:L23P (4.8) BS01 rna ? GO:0003735 ... Q4JB42 37604686
    821278 8hl3:L24E (4.8) BS01 rna ? GO:0003735 ... Q4JAV2 37604686
    821279 8hl3:L24P (4.8) BS01 rna ? GO:0003723 ... O05633 37604686
    821280 8hl3:L29P (4.8) BS01 rna ? GO:0003735 ... Q4JB47 37604686
    821281 8hl3:L30E (4.8) BS01 rna ? GO:0003723 ... P11522 37604686
    821282 8hl3:L30P (4.8) BS01 rna ? GO:0000463 ... O05642 37604686
    821283 8hl3:L31E (4.8) BS01 rna ? GO:0003735 ... P38618 37604686
    821284 8hl3:L32E (4.8) BS01 rna ? GO:0003735 ... O05638 37604686
    821285 8hl3:L34E (4.8) BS01 rna ? GO:0003735 ... O05981 37604686
    821286 8hl3:L37A (4.8) BS01 rna ? GO:0003735 ... Q4JB29 37604686
    821287 8hl3:L37E (4.8) BS01 rna ? GO:0003735 ... Q4JAZ9 37604686
    821288 8hl3:L39E (4.8) BS01 rna ? GO:0003735 ... P13005 37604686
    821289 8hl3:L40E (4.8) BS01 rna ? GO:0003735 ... Q4JAP0 37604686
    821290 8hl3:L44E (4.8) BS01 rna ? GO:0003735 ... Q4J9B2 37604686
    821291 8hl3:L45A (4.8) BS01 rna ? N/A Q4J9G6 37604686
    821292 8hl3:L46A (4.8) BS01 rna ? N/A Q4J953 37604686
    821293 8hl3:L47A (4.8) BS01 rna ? N/A F2Z6C4 37604686
    821294 8hl3:L7A1 (4.8) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    821295 8hl3:L7A2 (4.8) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    821296 8hl3:S10P (4.8) BS01 rna ? GO:0000049 ... P17199 37604686
    821297 8hl3:S11P (4.8) BS01 rna ? GO:0003735 ... P39469 37604686
    821298 8hl3:S12P (4.8) BS01 rna ? GO:0003735 ... P11524 37604686
    821299 8hl3:S13P (4.8) BS01 rna ? GO:0003676 ... P39470 37604686
    821300 8hl3:S14P (4.8) BS01 rna ? GO:0002181 ... O05635 37604686
    821301 8hl3:S15P (4.8) BS01 rna ? GO:0003735 ... Q4JAI3 37604686
    821302 8hl3:S17E (4.8) BS01 rna ? GO:0003735 ... Q4JAX5 37604686
    821303 8hl3:S17P (4.8) BS01 rna ? GO:0003735 ... Q4JB49 37604686
    821304 8hl3:S19E (4.8) BS01 rna ? GO:0000028 ... Q4J8U1 37604686
    821305 8hl3:S19P (4.8) BS01 rna ? GO:0003723 ... Q4JB44 37604686
    821306 8hl3:S24E (4.8) BS01 rna ? GO:0003735 ... Q4JAF9 37604686
    821307 8hl3:S27A (4.8) BS01 rna ? GO:0003735 ... Q4JAG0 37604686
    821308 8hl3:S27E (4.8) BS01 rna ? GO:0003735 ... Q4J9B1 37604686
    821309 8hl3:S28E (4.8) BS01 rna ? GO:0003735 ... Q4JAV1 37604686
    821310 8hl3:S3AE (4.8) BS01 rna ? GO:0003735 ... Q4JB17 37604686
    821311 8hl3:SL7A (4.8) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    821312 8hl4:AEFG (4.62) BS01 rna ? GO:0003746 ... P23112 37604686
    821313 8hl4:AEFG (4.62) BS02 rna ? GO:0003746 ... P23112 37604686
    821314 8hl4:AEFG (4.62) BS03 GNP ? GO:0003746 ... P23112 37604686
    821315 8hl4:AL1P (4.62) BS01 rna ? GO:0000049 ... P35024 37604686
    821316 8hl4:AL2P (4.62) BS01 rna ? GO:0002181 ... Q4JB43 37604686
    821317 8hl4:AL3P (4.62) BS01 rna ? GO:0003723 ... Q4JB40 37604686
    821318 8hl4:AL4P (4.62) BS01 rna ? GO:0003735 ... Q4JB41 37604686
    821319 8hl4:AL5P (4.62) BS01 rna ? GO:0000049 ... P41202 37604686
    821320 8hl4:AL5P (4.62) BS02 rna ? GO:0000049 ... P41202 37604686
    821321 8hl4:AL6P (4.62) BS01 rna ? GO:0002181 ... O05637 37604686
    821322 8hl4:ALX0 (4.62) BS01 rna ? GO:0003735 ... P38613 37604686
    821323 8hl4:AS2P (4.62) BS01 rna ? GO:0003735 ... P39478 37604686
    821324 8hl4:AS2P (4.62) BS02 UNK ? GO:0003735 ... P39478 37604686
    821325 8hl4:AS2P (4.62) BS03 UNK ? GO:0003735 ... P39478 37604686
    821326 8hl4:AS3P (4.62) BS01 rna ? GO:0003676 ... Q4JB46 37604686
    821327 8hl4:AS4E (4.62) BS01 rna ? GO:0003723 ... O05634 37604686
    821328 8hl4:AS4P (4.62) BS01 rna ? GO:0003723 ... P39467 37604686
    821329 8hl4:AS5P (4.62) BS01 rna ? GO:0003723 ... O05641 37604686
    821330 8hl4:AS5P (4.62) BS02 UNK ? GO:0003723 ... O05641 37604686
    821331 8hl4:AS5P (4.62) BS03 UNK ? GO:0003723 ... O05641 37604686
    821332 8hl4:AS5P (4.62) BS04 UNK ? GO:0003723 ... O05641 37604686
    821333 8hl4:AS6E (4.62) BS01 rna ? GO:0003735 ... Q4JAI1 37604686
    821334 8hl4:AS7P (4.62) BS01 rna ? GO:0003723 ... P17198 37604686
    821335 8hl4:AS8E (4.62) BS01 rna ? GO:0003735 ... Q4JAP5 37604686
    821336 8hl4:AS8E (4.62) BS02 rna ? GO:0003735 ... Q4JAP5 37604686
    821337 8hl4:AS8P (4.62) BS01 rna ? GO:0003735 ... O05636 37604686
    821338 8hl4:AS9P (4.62) BS01 rna ? GO:0000462 ... P39468 37604686
    821339 8hl4:L10E (4.62) BS01 rna ? GO:0003735 ... Q4JC84 37604686
    821340 8hl4:L10E (4.62) BS02 rna ? GO:0003735 ... Q4JC84 37604686
    821341 8hl4:L10E (4.62) BS03 rna ? GO:0003735 ... Q4JC84 37604686
    821342 8hl4:L13P (4.62) BS01 rna ? GO:0003729 ... P39473 37604686
    821343 8hl4:L141 (4.62) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    821344 8hl4:L142 (4.62) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    821345 8hl4:L14P (4.62) BS01 rna ? GO:0003735 ... Q4JB50 37604686
    821346 8hl4:L15E (4.62) BS01 rna ? GO:0003735 ... Q4JB20 37604686
    821347 8hl4:L15P (4.62) BS01 rna ? GO:0003735 ... O05643 37604686
    821348 8hl4:L18E (4.62) BS01 rna ? GO:0003735 ... P39474 37604686
    821349 8hl4:L18P (4.62) BS01 rna ? GO:0000027 ... O05640 37604686
    821350 8hl4:L18P (4.62) BS02 rna ? GO:0000027 ... O05640 37604686
    821351 8hl4:L19E (4.62) BS01 rna ? GO:0003723 ... O05639 37604686
    821352 8hl4:L21E (4.62) BS01 rna ? GO:0003735 ... Q4JB11 37604686
    821353 8hl4:L21E (4.62) BS02 rna ? GO:0003735 ... Q4JB11 37604686
    821354 8hl4:L22P (4.62) BS01 rna ? GO:0002181 ... Q4JB45 37604686
    821355 8hl4:L23P (4.62) BS01 rna ? GO:0003735 ... Q4JB42 37604686
    821356 8hl4:L24E (4.62) BS01 rna ? GO:0003735 ... Q4JAV2 37604686
    821357 8hl4:L24P (4.62) BS01 rna ? GO:0003723 ... O05633 37604686
    821358 8hl4:L29P (4.62) BS01 rna ? GO:0003735 ... Q4JB47 37604686
    821359 8hl4:L30E (4.62) BS01 rna ? GO:0003723 ... P11522 37604686
    821360 8hl4:L30P (4.62) BS01 rna ? GO:0000463 ... O05642 37604686
    821361 8hl4:L30P (4.62) BS02 rna ? GO:0000463 ... O05642 37604686
    821362 8hl4:L31E (4.62) BS01 rna ? GO:0003735 ... P38618 37604686
    821363 8hl4:L32E (4.62) BS01 rna ? GO:0003735 ... O05638 37604686
    821364 8hl4:L34E (4.62) BS01 rna ? GO:0003735 ... O05981 37604686
    821365 8hl4:L37A (4.62) BS01 rna ? GO:0003735 ... Q4JB29 37604686
    821366 8hl4:L37E (4.62) BS01 rna ? GO:0003735 ... Q4JAZ9 37604686
    821367 8hl4:L39E (4.62) BS01 rna ? GO:0003735 ... P13005 37604686
    821368 8hl4:L40E (4.62) BS01 rna ? GO:0003735 ... Q4JAP0 37604686
    821369 8hl4:L44E (4.62) BS01 rna ? GO:0003735 ... Q4J9B2 37604686
    821370 8hl4:L45A (4.62) BS01 rna ? N/A Q4J9G6 37604686
    821371 8hl4:L46A (4.62) BS01 rna ? N/A Q4J953 37604686
    821372 8hl4:L47A (4.62) BS01 rna ? N/A F2Z6C4 37604686
    821373 8hl4:L7A1 (4.62) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    821374 8hl4:L7A2 (4.62) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    821375 8hl4:S10P (4.62) BS01 rna ? GO:0000049 ... P17199 37604686
    821376 8hl4:S11P (4.62) BS01 rna ? GO:0003735 ... P39469 37604686
    821377 8hl4:S12P (4.62) BS01 rna ? GO:0003735 ... P11524 37604686
    821378 8hl4:S13P (4.62) BS01 rna ? GO:0003676 ... P39470 37604686
    821379 8hl4:S14P (4.62) BS01 rna ? GO:0002181 ... O05635 37604686
    821380 8hl4:S15P (4.62) BS01 rna ? GO:0003735 ... Q4JAI3 37604686
    821381 8hl4:S15P (4.62) BS02 rna ? GO:0003735 ... Q4JAI3 37604686
    821382 8hl4:S17E (4.62) BS01 rna ? GO:0003735 ... Q4JAX5 37604686
    821383 8hl4:S17P (4.62) BS01 rna ? GO:0003735 ... Q4JB49 37604686
    821384 8hl4:S19E (4.62) BS01 rna ? GO:0000028 ... Q4J8U1 37604686
    821385 8hl4:S19P (4.62) BS01 rna ? GO:0003723 ... Q4JB44 37604686
    821386 8hl4:S24E (4.62) BS01 rna ? GO:0003735 ... Q4JAF9 37604686
    821387 8hl4:S27A (4.62) BS01 rna ? GO:0003735 ... Q4JAG0 37604686
    821388 8hl4:S27E (4.62) BS01 rna ? GO:0003735 ... Q4J9B1 37604686
    821389 8hl4:S28E (4.62) BS01 rna ? GO:0003735 ... Q4JAV1 37604686
    821390 8hl4:S3AE (4.62) BS01 rna ? GO:0003735 ... Q4JB17 37604686
    821391 8hl4:SL7A (4.62) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    821392 8hl5:AL1P (5.72) BS01 rna ? GO:0000049 ... P35024 37604686
    821393 8hl5:AL2P (5.72) BS01 rna ? GO:0002181 ... Q4JB43 37604686
    821394 8hl5:AL3P (5.72) BS01 rna ? GO:0003723 ... Q4JB40 37604686
    821395 8hl5:AL4P (5.72) BS01 rna ? GO:0003735 ... Q4JB41 37604686
    821396 8hl5:AL5P (5.72) BS01 rna ? GO:0000049 ... P41202 37604686
    821397 8hl5:AL5P (5.72) BS02 rna ? GO:0000049 ... P41202 37604686
    821398 8hl5:AL6P (5.72) BS01 rna ? GO:0002181 ... O05637 37604686
    821399 8hl5:ALX0 (5.72) BS01 rna ? GO:0003735 ... P38613 37604686
    821400 8hl5:AS2P (5.72) BS01 rna ? GO:0003735 ... P39478 37604686

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).