SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    821601 8gxq:NC (5.04) BS02 dna N/A GO:0000786 ... N/A 36201575
    821602 8gxq:ND (5.04) BS01 dna ? GO:0000786 ... A0A8J0U496 36201575
    821603 8gxq:ND (5.04) BS02 dna ? GO:0000786 ... A0A8J0U496 36201575
    821604 8gxq:NE (5.04) BS01 dna ? GO:0000786 ... A0A310TTQ1 36201575
    821605 8gxq:NE (5.04) BS02 dna ? GO:0000786 ... A0A310TTQ1 36201575
    821606 8gxq:NF (5.04) BS01 dna ? GO:0000786 ... P62799 36201575
    821607 8gxq:NG (5.04) BS01 dna N/A GO:0000786 ... N/A 36201575
    821608 8gxq:NG (5.04) BS02 dna N/A GO:0000786 ... N/A 36201575
    821609 8gxq:NH (5.04) BS01 dna ? GO:0000786 ... A0A8J0U496 36201575
    821610 8gxq:NH (5.04) BS02 dna ? GO:0000786 ... A0A8J0U496 36201575
    821611 8gxq:PA (5.04) BS01 ZN 2.7.7.6 GO:0001172 ... A0A8D1DPV6 36201575
    821612 8gxq:PA (5.04) BS02 ZN 2.7.7.6 GO:0001172 ... A0A8D1DPV6 36201575
    821613 8gxq:PA (5.04) BS03 MG 2.7.7.6 GO:0001172 ... A0A8D1DPV6 36201575
    821614 8gxq:PB (5.04) BS01 ZN 2.7.7.6 GO:0001172 ... A0A4X1TVZ5 36201575
    821615 8gxq:PC (5.04) BS01 ZN ? GO:0003677 ... I3LCH3 36201575
    821616 8gxq:PE (5.04) BS01 dna ? GO:0003677 ... A0A4X1VTX4 36201575
    821617 8gxq:PI (5.04) BS01 ZN ? GO:0001193 ... P60899 36201575
    821618 8gxq:PI (5.04) BS02 ZN ? GO:0001193 ... P60899 36201575
    821619 8gxq:PJ (5.04) BS01 ZN ? GO:0003677 ... A0A493TD97 36201575
    821620 8gxq:PL (5.04) BS01 ZN ? GO:0001650 ... A0A4X1TRS6 36201575
    821621 8gxq:c (5.04) BS01 ZN ? GO:0000151 ... Q6P2C8 36201575
    821622 8gxq:p (5.04) BS01 ZN ? GO:0003713 ... Q9Y2X0 36201575
    821623 8gxq:s (5.04) BS01 dna ? GO:0003712 ... A0JLT2 36201575
    821624 8gxs:BA (4.16) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 36201575
    821625 8gxs:BA (4.16) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 36201575
    821626 8gxs:BA (4.16) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 36201575
    821627 8gxs:DP (4.16) BS01 dna ? GO:0000785 ... P20226 36201575
    821628 8gxs:DP (4.16) BS02 dna ? GO:0000785 ... P20226 36201575
    821629 8gxs:DQ (4.16) BS01 dna ? GO:0000979 ... P52655 36201575
    821630 8gxs:EA (4.16) BS01 ZN ? GO:0005515 ... P29083 36201575
    821631 8gxs:FB (4.16) BS01 dna 3.6.4.12 GO:0005515 ... P13984 36201575
    821632 8gxs:FB (4.16) BS02 dna 3.6.4.12 GO:0005515 ... P13984 36201575
    821633 8gxs:HA (4.16) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 36201575
    821634 8gxs:HD (4.16) BS01 ZN ? GO:0000082 ... P51948 36201575
    821635 8gxs:HE (4.16) BS01 ZN ? GO:0000438 ... Q13889 36201575
    821636 8gxs:HE (4.16) BS02 ZN ? GO:0000438 ... Q13889 36201575
    821637 8gxs:HG (4.16) BS01 ZN ? GO:0000438 ... Q13888 36201575
    821638 8gxs:HG (4.16) BS02 ZN ? GO:0000438 ... Q13888 36201575
    821639 8gxs:HG (4.16) BS03 ZN ? GO:0000438 ... Q13888 36201575
    821640 8gxs:HH (4.16) BS01 dna 5.6.2.4 GO:0000112 ... P19447 36201575
    821641 8gxs:HH (4.16) BS02 dna 5.6.2.4 GO:0000112 ... P19447 36201575
    821642 8gxs:HH (4.16) BS03 dna 5.6.2.4 GO:0000112 ... P19447 36201575
    821643 8gxs:NA (4.16) BS01 dna ? GO:0000786 ... A0A310TTQ1 36201575
    821644 8gxs:NA (4.16) BS02 dna ? GO:0000786 ... A0A310TTQ1 36201575
    821645 8gxs:NB (4.16) BS01 dna ? GO:0000786 ... P62799 36201575
    821646 8gxs:NC (4.16) BS01 dna N/A GO:0000786 ... N/A 36201575
    821647 8gxs:NC (4.16) BS02 dna N/A GO:0000786 ... N/A 36201575
    821648 8gxs:ND (4.16) BS01 dna ? GO:0000786 ... A0A8J0U496 36201575
    821649 8gxs:ND (4.16) BS02 dna ? GO:0000786 ... A0A8J0U496 36201575
    821650 8gxs:NE (4.16) BS01 dna ? GO:0000786 ... A0A310TTQ1 36201575
    821651 8gxs:NE (4.16) BS02 dna ? GO:0000786 ... A0A310TTQ1 36201575
    821652 8gxs:NF (4.16) BS01 dna ? GO:0000786 ... P62799 36201575
    821653 8gxs:NG (4.16) BS01 dna N/A GO:0000786 ... N/A 36201575
    821654 8gxs:NG (4.16) BS02 dna N/A GO:0000786 ... N/A 36201575
    821655 8gxs:NH (4.16) BS01 dna ? GO:0000786 ... A0A8J0U496 36201575
    821656 8gxs:NH (4.16) BS02 dna ? GO:0000786 ... A0A8J0U496 36201575
    821657 8gxs:PA (4.16) BS01 ZN 2.7.7.6 GO:0001172 ... A0A8D1DPV6 36201575
    821658 8gxs:PA (4.16) BS02 ZN 2.7.7.6 GO:0001172 ... A0A8D1DPV6 36201575
    821659 8gxs:PA (4.16) BS03 MG 2.7.7.6 GO:0001172 ... A0A8D1DPV6 36201575
    821660 8gxs:PB (4.16) BS01 ZN 2.7.7.6 GO:0001172 ... A0A4X1TVZ5 36201575
    821661 8gxs:PC (4.16) BS01 ZN ? GO:0003677 ... I3LCH3 36201575
    821662 8gxs:PI (4.16) BS01 ZN ? GO:0001193 ... P60899 36201575
    821663 8gxs:PI (4.16) BS02 ZN ? GO:0001193 ... P60899 36201575
    821664 8gxs:PJ (4.16) BS01 ZN ? GO:0003677 ... A0A493TD97 36201575
    821665 8gxs:PL (4.16) BS01 ZN ? GO:0001650 ... A0A4X1TRS6 36201575
    821666 8gxs:c (4.16) BS01 ZN ? GO:0000151 ... Q6P2C8 36201575
    821667 8gxs:p (4.16) BS01 ZN ? GO:0003713 ... Q9Y2X0 36201575
    821668 8gxu:B (2.5) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 36626983
    821669 8gxv:A (2.2) BS01 ZN ? GO:0004867 ... B3ECZ8 N/A
    821670 8gxv:A (2.2) BS02 ZN ? GO:0004867 ... B3ECZ8 N/A
    821671 8gxv:A (2.2) BS03 ZN ? GO:0004867 ... B3ECZ8 N/A
    821672 8gxw:B (2.7) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 36626983
    821673 8gxw:C (2.7) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 36626983
    821674 8gxw:E (2.7) BS01 ATP ? GO:0005515 ... Q56404 36626983
    821675 8gxx:A (3.0) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 36626983
    821676 8gxx:B (3.0) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 36626983
    821677 8gxx:C (3.0) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 36626983
    821678 8gxx:E (3.0) BS01 ATP ? GO:0005515 ... Q56404 36626983
    821679 8gxz:C (3.1) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 36626983
    821680 8gy1:A (1.9) BS01 AG 1.16.3.1 GO:0004322 ... A0A8F4Y4C2 36904538
    821681 8gy1:A (1.9) BS02 AG 1.16.3.1 GO:0004322 ... A0A8F4Y4C2 36904538
    821682 8gy2:A (2.5) BS01 HEC 1.1.5.5 GO:0005509 ... O05542 N/A
    821683 8gy2:A (2.5) BS02 PQQ 1.1.5.5 GO:0005509 ... O05542 N/A
    821684 8gy2:A (2.5) BS03 CA 1.1.5.5 GO:0005509 ... O05542 N/A
    821685 8gy2:B (2.5) BS01 HEC 1.1.5.5 GO:0005506 ... Q47945 N/A
    821686 8gy2:B (2.5) BS02 HEC 1.1.5.5 GO:0005506 ... Q47945 N/A
    821687 8gy2:B (2.5) BS03 HEC 1.1.5.5 GO:0005506 ... Q47945 N/A
    821688 8gy2:B (2.5) BS04 HEC 1.1.5.5 GO:0005506 ... Q47945 N/A
    821689 8gy2:B (2.5) BS05 U10 1.1.5.5 GO:0005506 ... Q47945 N/A
    821690 8gy3:A (2.7) BS01 HEC 1.2.99.7 GO:0005506 ... Q5DW50 N/A
    821691 8gy3:A (2.7) BS02 HEC 1.2.99.7 GO:0005506 ... Q5DW50 N/A
    821692 8gy3:A (2.7) BS03 HEC 1.2.99.7 GO:0005506 ... Q5DW50 N/A
    821693 8gy3:A (2.7) BS04 U10 1.2.99.7 GO:0005506 ... Q5DW50 N/A
    821694 8gy3:B (2.7) BS01 FES 1.2.99.3 GO:0016491 ... Q5FTD2 N/A
    821695 8gy3:B (2.7) BS02 FES 1.2.99.3 GO:0016491 ... Q5FTD2 N/A
    821696 8gy3:B (2.7) BS03 PCD 1.2.99.3 GO:0016491 ... Q5FTD2 N/A
    821697 8gy3:C (2.7) BS01 PCD 1.2.99.3 GO:0016491 ... Q5FTD1 N/A
    821698 8gy6:A (-1.00) BS01 GO3 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    821699 8gy6:A (-1.00) BS02 GO3 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    821700 8gy7:P (3.3) BS01 peptide ? GO:0005515 ... Q8TCY5 36588120
    821701 8gy7:R (3.3) BS01 peptide ? GO:0004930 ... P0ABE7
    Q01718    		 36588120
    821702 8gy7:R (3.3) BS02 CA ? GO:0004930 ... P0ABE7
    Q01718    		 36588120
    821703 8gy9:A (2.3) BS01 SAM 3.6.4.13 GO:0008168 ... A0A344X2I6 37831643
    821704 8gy9:B (2.3) BS01 SAM 3.6.4.13 GO:0008168 ... A0A344X2I6 37831643
    821705 8gya:A (2.005) BS01 SFG 3.6.4.13 GO:0008168 ... A0A344X2I6 37831643
    821706 8gya:B (2.005) BS01 SFG 3.6.4.13 GO:0008168 ... A0A344X2I6 37831643
    821707 8gyb:A (2.101) BS01 SAH 3.6.4.13 GO:0008168 ... A0A344X2I6 37831643
    821708 8gyb:B (2.101) BS01 SAH 3.6.4.13 GO:0008168 ... A0A344X2I6 37831643
    821709 8gyb:C (2.101) BS01 SAH 3.6.4.13 GO:0008168 ... A0A344X2I6 37831643
    821710 8gyb:D (2.101) BS01 SAH 3.6.4.13 GO:0008168 ... A0A344X2I6 37831643
    821711 8gyc:B (1.8) BS01 CA ? GO:0001786 ... P08758 39663418
    821712 8gyc:B (1.8) BS02 CA ? GO:0001786 ... P08758 39663418
    821713 8gyd:A (1.7) BS01 0IH 2.5.1.18 GO:0004364 ... P08515 37552553
    821714 8gyd:B (1.7) BS01 0IH 2.5.1.18 GO:0004364 ... P08515 37552553
    821715 8gyd:B (1.7) BS02 0IH 2.5.1.18 GO:0004364 ... P08515 37552553
    821716 8gyg:A (2.0) BS01 CA ? GO:0042780 ... A0ACD6B8B6 N/A
    821717 8gyg:A (2.0) BS02 CA ? GO:0042780 ... A0ACD6B8B6 N/A
    821718 8gyg:A (2.0) BS03 MN ? GO:0042780 ... A0ACD6B8B6 N/A
    821719 8gyg:B (2.0) BS01 CA ? GO:0042780 ... A0ACD6B8B6 N/A
    821720 8gyg:B (2.0) BS02 CA ? GO:0042780 ... A0ACD6B8B6 N/A
    821721 8gyi:A (1.93) BS01 PLP ? GO:0000271 ... A0A1W5T2G9 36669120
    821722 8gyi:B (1.93) BS01 PLP ? GO:0000271 ... A0A1W5T2G9 36669120
    821723 8gyj:A (1.82) BS01 KKX ? GO:0000271 ... A0A1W5T2G9 36669120
    821724 8gyj:A (1.82) BS02 KKX ? GO:0000271 ... A0A1W5T2G9 36669120
    821725 8gyj:B (1.82) BS01 KKX ? GO:0000271 ... A0A1W5T2G9 36669120
    821726 8gyk:A (3.14) BS01 ADP ? GO:0000150 ... Q06609 37591853
    821727 8gyk:A (3.14) BS02 MG ? GO:0000150 ... Q06609 37591853
    821728 8gyk:B (3.14) BS01 ADP ? GO:0000150 ... Q06609 37591853
    821729 8gyk:B (3.14) BS02 MG ? GO:0000150 ... Q06609 37591853
    821730 8gyk:C (3.14) BS01 ADP ? GO:0000150 ... Q06609 37591853
    821731 8gyk:C (3.14) BS02 MG ? GO:0000150 ... Q06609 37591853
    821732 8gyk:D (3.14) BS01 ADP ? GO:0000150 ... Q06609 37591853
    821733 8gyk:D (3.14) BS02 MG ? GO:0000150 ... Q06609 37591853
    821734 8gyk:E (3.14) BS01 ADP ? GO:0000150 ... Q06609 37591853
    821735 8gyk:E (3.14) BS02 MG ? GO:0000150 ... Q06609 37591853
    821736 8gyk:F (3.14) BS01 ADP ? GO:0000150 ... Q06609 37591853
    821737 8gyk:F (3.14) BS02 MG ? GO:0000150 ... Q06609 37591853
    821738 8gyk:G (3.14) BS01 ADP ? GO:0000150 ... Q06609 37591853
    821739 8gyk:G (3.14) BS02 MG ? GO:0000150 ... Q06609 37591853
    821740 8gyk:H (3.14) BS01 ADP ? GO:0000150 ... Q06609 37591853
    821741 8gyk:H (3.14) BS02 MG ? GO:0000150 ... Q06609 37591853
    821742 8gym:2E (2.96) BS01 HEC ? N/A Q24I09 37248254
    821743 8gym:2N (2.96) BS01 U10 ? N/A W7XF00 37248254
    821744 8gym:2e (2.96) BS01 HEC ? N/A Q24I09 37248254
    821745 8gym:2n (2.96) BS01 U10 ? N/A W7XF00 37248254
    821746 8gym:5B (2.96) BS01 U10 ? N/A Q951C2 37248254
    821747 8gym:5b (2.96) BS01 U10 ? N/A Q951C2 37248254
    821748 8gym:A6 (2.96) BS01 ZMP ? GO:0005743 ... I7M2Y3 37248254
    821749 8gym:A9 (2.96) BS01 NDP ? GO:0005739 ... I7MLH2 37248254
    821750 8gym:B4 (2.96) BS01 ADP N/A N/A N/A 37248254
    821751 8gym:B6 (2.96) BS01 T7X ? N/A Q231G0 37248254
    821752 8gym:B8 (2.96) BS01 U10 ? N/A I7M855 37248254
    821753 8gym:B8 (2.96) BS02 ADP ? N/A I7M855 37248254
    821754 8gym:B9 (2.96) BS01 ADP ? N/A Q233X7 37248254
    821755 8gym:C1 (2.96) BS01 HEA 7.1.1.9 GO:0004129 ... Q950Y4 37248254
    821756 8gym:C1 (2.96) BS02 HEA 7.1.1.9 GO:0004129 ... Q950Y4 37248254
    821757 8gym:C1 (2.96) BS03 CU 7.1.1.9 GO:0004129 ... Q950Y4 37248254
    821758 8gym:C1 (2.96) BS04 MG 7.1.1.9 GO:0004129 ... Q950Y4 37248254
    821759 8gym:C2 (2.96) BS01 HEA 7.1.1.9 GO:0004129 ... Q950Y9 37248254
    821760 8gym:C2 (2.96) BS02 CU 7.1.1.9 GO:0004129 ... Q950Y9 37248254
    821761 8gym:C2 (2.96) BS03 CU 7.1.1.9 GO:0004129 ... Q950Y9 37248254
    821762 8gym:FS (2.96) BS01 FES ? GO:0005737 ... I7M8P0 37248254
    821763 8gym:FS (2.96) BS02 FES ? GO:0005737 ... I7M8P0 37248254
    821764 8gym:FX (2.96) BS01 FES ? GO:0005739 ... Q22W11 37248254
    821765 8gym:M2 (2.96) BS01 P5S ? GO:0016020 ... Q23M99 37248254
    821766 8gym:N5 (2.96) BS01 T7X 1.6.5.3 GO:0003954 ... Q950Z0 37248254
    821767 8gym:N5 (2.96) BS02 U10 1.6.5.3 GO:0003954 ... Q950Z0 37248254
    821768 8gym:QC (2.96) BS01 peptide 1.10.2.2 GO:0009055 ... Q950Z1 37248254
    821769 8gym:QC (2.96) BS02 HEM 1.10.2.2 GO:0009055 ... Q950Z1 37248254
    821770 8gym:QC (2.96) BS03 HEM 1.10.2.2 GO:0009055 ... Q950Z1 37248254
    821771 8gym:QC (2.96) BS04 U10 1.10.2.2 GO:0009055 ... Q950Z1 37248254
    821772 8gym:QC (2.96) BS05 U10 1.10.2.2 GO:0009055 ... Q950Z1 37248254
    821773 8gym:QD (2.96) BS01 peptide ? GO:0005739 ... Q24IM5 37248254
    821774 8gym:QD (2.96) BS02 HEC ? GO:0005739 ... Q24IM5 37248254
    821775 8gym:QE (2.96) BS01 FES ? GO:0016020 ... I7MIC7 37248254
    821776 8gym:QH (2.96) BS01 U10 ? N/A I7M484 37248254
    821777 8gym:Qc (2.96) BS01 peptide 1.10.2.2 GO:0009055 ... Q950Z1 37248254
    821778 8gym:Qc (2.96) BS02 U10 1.10.2.2 GO:0009055 ... Q950Z1 37248254
    821779 8gym:Qc (2.96) BS03 HEM 1.10.2.2 GO:0009055 ... Q950Z1 37248254
    821780 8gym:Qc (2.96) BS04 HEM 1.10.2.2 GO:0009055 ... Q950Z1 37248254
    821781 8gym:Qc (2.96) BS05 U10 1.10.2.2 GO:0009055 ... Q950Z1 37248254
    821782 8gym:Qd (2.96) BS01 peptide ? GO:0005739 ... Q24IM5 37248254
    821783 8gym:Qd (2.96) BS02 HEC ? GO:0005739 ... Q24IM5 37248254
    821784 8gym:Qe (2.96) BS01 FES ? GO:0016020 ... I7MIC7 37248254
    821785 8gym:Qh (2.96) BS01 U10 ? N/A I7M484 37248254
    821786 8gym:S1 (2.96) BS01 SF4 ? GO:0008137 ... Q23KA9 37248254
    821787 8gym:S1 (2.96) BS02 SF4 ? GO:0008137 ... Q23KA9 37248254
    821788 8gym:S1 (2.96) BS03 FES ? GO:0008137 ... Q23KA9 37248254
    821789 8gym:S6 (2.96) BS01 ZN ? GO:0005739 ... I7MK02 37248254
    821790 8gym:S7 (2.96) BS01 SF4 1.6.5.3 GO:0008137 ... Q951B4 37248254
    821791 8gym:S8 (2.96) BS01 SF4 ? GO:0003954 ... I7MDW5 37248254
    821792 8gym:S8 (2.96) BS02 SF4 ? GO:0003954 ... I7MDW5 37248254
    821793 8gym:SA (2.96) BS01 FAD 1.3.5.1 GO:0000104 ... Q23DI3 37248254
    821794 8gym:SB (2.96) BS01 FES 1.3.5.1 GO:0005743 ... I7M403 37248254
    821795 8gym:SB (2.96) BS02 SF4 1.3.5.1 GO:0005743 ... I7M403 37248254
    821796 8gym:SB (2.96) BS03 F3S 1.3.5.1 GO:0005743 ... I7M403 37248254
    821797 8gym:SB (2.96) BS04 U10 1.3.5.1 GO:0005743 ... I7M403 37248254
    821798 8gym:SC (2.96) BS01 U10 ? N/A Q23RH8 37248254
    821799 8gym:T (2.96) BS01 peptide ? N/A Q23VY4 37248254
    821800 8gym:V1 (2.96) BS01 SF4 7.1.1.2 GO:0005739 ... Q23KE4 37248254
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).