SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    822401 8hsl:J (5.8) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    822402 8hsm:A (2.2) BS01 peptide ? N/A G1PNR4 38755285
    822403 8hso:A (2.1) BS01 peptide ? N/A G1PNR4 38755285
    822404 8hsp:0 (2.32) BS01 rna ? GO:0000027 ... P0A7N9 38538915
    822405 8hsp:1 (2.32) BS01 rna ? GO:0002181 ... P0A7P5 38538915
    822406 8hsp:2 (2.32) BS01 rna ? GO:0002181 ... P0A7Q1 38538915
    822407 8hsp:3 (2.32) BS01 rna ? GO:0002181 ... P0A7Q6 38538915
    822408 8hsp:4 (2.32) BS01 rna ? GO:0002181 ... P0A7M9 38538915
    822409 8hsp:B (2.32) BS01 rna N/A GO:0000028 ... P0A7V0 38538915
    822410 8hsp:C (2.32) BS01 rna ? GO:0000028 ... P0A7V3 38538915
    822411 8hsp:D (2.32) BS01 rna ? GO:0000028 ... P0A7V8 38538915
    822412 8hsp:E (2.32) BS01 rna ? GO:0000028 ... P0A7W1 38538915
    822413 8hsp:F (2.32) BS01 rna ? GO:0002181 ... P02358 38538915
    822414 8hsp:G (2.32) BS01 rna ? GO:0000028 ... P02359 38538915
    822415 8hsp:H (2.32) BS01 rna ? GO:0000028 ... P0A7W7 38538915
    822416 8hsp:I (2.32) BS01 rna ? GO:0000049 ... P0A7X3 38538915
    822417 8hsp:I (2.32) BS02 rna ? GO:0000049 ... P0A7X3 38538915
    822418 8hsp:J (2.32) BS01 rna ? GO:0000049 ... P0A7R5 38538915
    822419 8hsp:K (2.32) BS01 rna ? GO:0002181 ... P0A7R9 38538915
    822420 8hsp:L (2.32) BS01 rna ? GO:0000049 ... P0A7S3 38538915
    822421 8hsp:M (2.32) BS01 rna ? GO:0000049 ... P0A7S9 38538915
    822422 8hsp:M (2.32) BS02 rna ? GO:0000049 ... P0A7S9 38538915
    822423 8hsp:N (2.32) BS01 rna ? GO:0000028 ... P0AG59 38538915
    822424 8hsp:O (2.32) BS01 rna ? GO:0000028 ... P0ADZ4 38538915
    822425 8hsp:O (2.32) BS02 rna ? GO:0000028 ... P0ADZ4 38538915
    822426 8hsp:P (2.32) BS01 rna ? GO:0000028 ... P0A7T3 38538915
    822427 8hsp:Q (2.32) BS01 rna ? GO:0000028 ... P0AG63 38538915
    822428 8hsp:R (2.32) BS01 rna ? GO:0002181 ... P0A7T7 38538915
    822429 8hsp:S (2.32) BS01 rna ? GO:0000028 ... P0A7U3 38538915
    822430 8hsp:T (2.32) BS01 rna ? GO:0000028 ... P0A7U7 38538915
    822431 8hsp:U (2.32) BS01 rna ? GO:0000028 ... P68679 38538915
    822432 8hsp:c (2.32) BS01 rna ? GO:0000027 ... P60422 38538915
    822433 8hsp:d (2.32) BS01 rna ? GO:0000027 ... P60438 38538915
    822434 8hsp:e (2.32) BS01 rna ? GO:0001070 ... P60723 38538915
    822435 8hsp:f (2.32) BS01 rna ? GO:0000027 ... P62399 38538915
    822436 8hsp:f (2.32) BS02 rna ? GO:0000027 ... P62399 38538915
    822437 8hsp:f (2.32) BS03 rna ? GO:0000027 ... P62399 38538915
    822438 8hsp:g (2.32) BS01 rna ? GO:0000027 ... P0AG55 38538915
    822439 8hsp:h (2.32) BS01 rna ? GO:0002181 ... P0A7R1 38538915
    822440 8hsp:i (2.32) BS01 rna ? GO:0002181 ... P0AA10 38538915
    822441 8hsp:j (2.32) BS01 rna ? GO:0002181 ... P0ADY3 38538915
    822442 8hsp:j (2.32) BS02 rna ? GO:0002181 ... P0ADY3 38538915
    822443 8hsp:k (2.32) BS01 rna ? GO:0002181 ... P02413 38538915
    822444 8hsp:l (2.32) BS01 rna ? GO:0000027 ... P0ADY7 38538915
    822445 8hsp:l (2.32) BS02 rna ? GO:0000027 ... P0ADY7 38538915
    822446 8hsp:l (2.32) BS03 rna ? GO:0000027 ... P0ADY7 38538915
    822447 8hsp:m (2.32) BS01 rna ? GO:0000027 ... P0AG44 38538915
    822448 8hsp:n (2.32) BS01 rna ? GO:0002181 ... P0C018 38538915
    822449 8hsp:n (2.32) BS02 rna ? GO:0002181 ... P0C018 38538915
    822450 8hsp:o (2.32) BS01 rna ? GO:0000027 ... P0A7K6 38538915
    822451 8hsp:o (2.32) BS02 rna ? GO:0000027 ... P0A7K6 38538915
    822452 8hsp:p (2.32) BS01 rna ? GO:0000027 ... P0A7L3 38538915
    822453 8hsp:q (2.32) BS01 rna ? GO:0002181 ... P0AG48 38538915
    822454 8hsp:r (2.32) BS01 rna ? GO:0002181 ... P61175 38538915
    822455 8hsp:s (2.32) BS01 rna ? GO:0000027 ... P0ADZ0 38538915
    822456 8hsp:t (2.32) BS01 rna ? GO:0000027 ... P60624 38538915
    822457 8hsp:u (2.32) BS01 rna ? GO:0000027 ... P68919 38538915
    822458 8hsp:v (2.32) BS01 rna ? GO:0000027 ... P0A7L8 38538915
    822459 8hsp:v (2.32) BS02 rna ? GO:0000027 ... P0A7L8 38538915
    822460 8hsp:w (2.32) BS01 rna ? GO:0000027 ... P0A7M2 38538915
    822461 8hsp:x (2.32) BS01 rna ? GO:0000027 ... P0A7M6 38538915
    822462 8hsp:y (2.32) BS01 rna ? GO:0000027 ... P0AG51 38538915
    822463 8hsp:z (2.32) BS01 rna ? GO:0000027 ... P0A7N4 38538915
    822464 8hsr:A (4.0) BS01 rna 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    822465 8hsr:A (4.0) BS02 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    822466 8hsr:A (4.0) BS03 BEF 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    822467 8hsr:B (4.0) BS01 rna 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    822468 8hsr:B (4.0) BS02 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    822469 8hsr:B (4.0) BS03 BEF 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    822470 8hsr:C (4.0) BS01 rna 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    822471 8hsr:C (4.0) BS02 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    822472 8hsr:C (4.0) BS03 MG 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    822473 8hsr:C (4.0) BS04 BEF 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    822474 8hsr:D (4.0) BS01 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    822475 8hsr:D (4.0) BS02 MG 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    822476 8hsr:D (4.0) BS03 BEF 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    822477 8hsr:E (4.0) BS01 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    822478 8hsr:F (4.0) BS01 rna 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    822479 8hsr:F (4.0) BS02 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    822480 8hsr:F (4.0) BS03 BEF 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    822481 8hsr:I (4.0) BS01 dna 2.7.7.6 GO:0000428 ... Q8RQE9 36753546
    822482 8hsr:I (4.0) BS02 rna 2.7.7.6 GO:0000428 ... Q8RQE9 36753546
    822483 8hsr:J (4.0) BS01 dna 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    822484 8hsr:J (4.0) BS02 rna 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    822485 8hsr:J (4.0) BS03 dna 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    822486 8hsr:J (4.0) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    822487 8hsr:J (4.0) BS05 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    822488 8hsr:J (4.0) BS06 MG 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    822489 8hsv:A (3.0) BS01 peptide ? GO:0000785 ... P29066 37399373
    822490 8hsv:B (3.0) BS01 peptide ? GO:0000785 ... P29066 37399373
    822491 8hsv:B (3.0) BS02 peptide ? GO:0000785 ... P29066 37399373
    822492 8hsw:A (2.03) BS01 peptide ? N/A G1PNR4 38755285
    822493 8ht1:A (2.4) BS01 peptide ? N/A G1PNR4 38755285
    822494 8ht4:A (2.51) BS01 PLP 2.6.1.11 GO:0003992 ... Q59282 37230944
    822495 8ht4:B (2.51) BS01 PLP 2.6.1.11 GO:0003992 ... Q59282 37230944
    822496 8ht9:A (2.2) BS01 peptide ? N/A G1PNR4 38755285
    822497 8htb:A (1.3) BS01 GDP ? GO:0003924 ... Q6GHP9 36854145
    822498 8htb:A (1.3) BS02 CA ? GO:0003924 ... Q6GHP9 36854145
    822499 8htb:A (1.3) BS03 ZI9 ? GO:0003924 ... Q6GHP9 36854145
    822500 8hte:A (2.307) BS01 NCA 2.4.2.- N/A Q7NY09 37945894
    822501 8hte:B (2.307) BS01 AR6 ? N/A P0CH08 37945894
    822502 8htf:A (2.151) BS01 NAD 2.4.2.- N/A Q7NY09 37945894
    822503 8htg:A (2.91) BS01 MG ? GO:0001975 ... Q8CGK7 38062020
    822504 8htg:A (2.91) BS02 GSP ? GO:0001975 ... Q8CGK7 38062020
    822505 8htg:B (2.91) BS01 MG ? GO:0001975 ... Q8CGK7 38062020
    822506 8htg:B (2.91) BS02 GSP ? GO:0001975 ... Q8CGK7 38062020
    822507 8htg:C (2.91) BS01 MG ? GO:0001975 ... Q8CGK7 38062020
    822508 8htg:C (2.91) BS02 GSP ? GO:0001975 ... Q8CGK7 38062020
    822509 8htg:D (2.91) BS01 MG ? GO:0001975 ... Q8CGK7 38062020
    822510 8htg:D (2.91) BS02 GSP ? GO:0001975 ... Q8CGK7 38062020
    822511 8hti:R (2.97) BS01 OCA N/A GO:0004930 ... N/A 38062020
    822512 8htr:A (1.6) BS01 MWH N/A GO:0042981 ... P10415 38695063
    822513 8hts:A (1.25) BS01 N2L N/A GO:0042981 ... P10415 38695063
    822514 8htt:B (3.6) BS01 GCO ? GO:0006091 ... Q8NBN3 38992057
    822515 8htu:1 (2.87) BS01 CHL ? GO:0009416 ... A0A2K1JLZ3 37474782
    822516 8htu:1 (2.87) BS02 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822517 8htu:1 (2.87) BS03 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822518 8htu:1 (2.87) BS04 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822519 8htu:1 (2.87) BS05 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822520 8htu:1 (2.87) BS06 CHL ? GO:0009416 ... A0A2K1JLZ3 37474782
    822521 8htu:1 (2.87) BS07 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822522 8htu:1 (2.87) BS08 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822523 8htu:1 (2.87) BS09 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822524 8htu:1 (2.87) BS10 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822525 8htu:1 (2.87) BS11 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822526 8htu:1 (2.87) BS12 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822527 8htu:1 (2.87) BS13 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822528 8htu:1 (2.87) BS14 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822529 8htu:1 (2.87) BS15 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822530 8htu:2 (2.87) BS01 CHL ? GO:0009416 ... A9TJ06 37474782
    822531 8htu:2 (2.87) BS02 CHL ? GO:0009416 ... A9TJ06 37474782
    822532 8htu:2 (2.87) BS03 CLA ? GO:0009416 ... A9TJ06 37474782
    822533 8htu:2 (2.87) BS04 CLA ? GO:0009416 ... A9TJ06 37474782
    822534 8htu:2 (2.87) BS05 CHL ? GO:0009416 ... A9TJ06 37474782
    822535 8htu:2 (2.87) BS06 CHL ? GO:0009416 ... A9TJ06 37474782
    822536 8htu:2 (2.87) BS07 CHL ? GO:0009416 ... A9TJ06 37474782
    822537 8htu:2 (2.87) BS08 CLA ? GO:0009416 ... A9TJ06 37474782
    822538 8htu:2 (2.87) BS09 CLA ? GO:0009416 ... A9TJ06 37474782
    822539 8htu:2 (2.87) BS10 CLA ? GO:0009416 ... A9TJ06 37474782
    822540 8htu:2 (2.87) BS11 CLA ? GO:0009416 ... A9TJ06 37474782
    822541 8htu:2 (2.87) BS12 CLA ? GO:0009416 ... A9TJ06 37474782
    822542 8htu:2 (2.87) BS13 CLA ? GO:0009416 ... A9TJ06 37474782
    822543 8htu:2 (2.87) BS14 CHL ? GO:0009416 ... A9TJ06 37474782
    822544 8htu:2 (2.87) BS15 CLA ? GO:0009416 ... A9TJ06 37474782
    822545 8htu:3 (2.87) BS01 CHL ? GO:0009416 ... A0A2K1IB10 37474782
    822546 8htu:3 (2.87) BS02 CLA ? GO:0009416 ... A0A2K1IB10 37474782
    822547 8htu:3 (2.87) BS03 CLA ? GO:0009416 ... A0A2K1IB10 37474782
    822548 8htu:3 (2.87) BS04 CLA ? GO:0009416 ... A0A2K1IB10 37474782
    822549 8htu:3 (2.87) BS05 CLA ? GO:0009416 ... A0A2K1IB10 37474782
    822550 8htu:3 (2.87) BS06 CLA ? GO:0009416 ... A0A2K1IB10 37474782
    822551 8htu:3 (2.87) BS07 CLA ? GO:0009416 ... A0A2K1IB10 37474782
    822552 8htu:3 (2.87) BS08 CHL ? GO:0009416 ... A0A2K1IB10 37474782
    822553 8htu:3 (2.87) BS09 CLA ? GO:0009416 ... A0A2K1IB10 37474782
    822554 8htu:3 (2.87) BS10 CLA ? GO:0009416 ... A0A2K1IB10 37474782
    822555 8htu:3 (2.87) BS11 CLA ? GO:0009416 ... A0A2K1IB10 37474782
    822556 8htu:3 (2.87) BS12 CLA ? GO:0009416 ... A0A2K1IB10 37474782
    822557 8htu:3 (2.87) BS13 CLA ? GO:0009416 ... A0A2K1IB10 37474782
    822558 8htu:3 (2.87) BS14 CLA ? GO:0009416 ... A0A2K1IB10 37474782
    822559 8htu:3 (2.87) BS15 CLA ? GO:0009416 ... A0A2K1IB10 37474782
    822560 8htu:3 (2.87) BS16 CLA ? GO:0009416 ... A0A2K1IB10 37474782
    822561 8htu:3 (2.87) BS17 CLA ? GO:0009416 ... A0A2K1IB10 37474782
    822562 8htu:3 (2.87) BS18 CLA ? GO:0009416 ... A0A2K1IB10 37474782
    822563 8htu:4 (2.87) BS01 CHL ? GO:0009507 ... A0A2K1K0E4 37474782
    822564 8htu:4 (2.87) BS02 CLA ? GO:0009507 ... A0A2K1K0E4 37474782
    822565 8htu:4 (2.87) BS03 CLA ? GO:0009507 ... A0A2K1K0E4 37474782
    822566 8htu:4 (2.87) BS04 CLA ? GO:0009507 ... A0A2K1K0E4 37474782
    822567 8htu:4 (2.87) BS05 CLA ? GO:0009507 ... A0A2K1K0E4 37474782
    822568 8htu:4 (2.87) BS06 CHL ? GO:0009507 ... A0A2K1K0E4 37474782
    822569 8htu:4 (2.87) BS07 CHL ? GO:0009507 ... A0A2K1K0E4 37474782
    822570 8htu:4 (2.87) BS08 CHL ? GO:0009507 ... A0A2K1K0E4 37474782
    822571 8htu:4 (2.87) BS09 CLA ? GO:0009507 ... A0A2K1K0E4 37474782
    822572 8htu:4 (2.87) BS10 CLA ? GO:0009507 ... A0A2K1K0E4 37474782
    822573 8htu:4 (2.87) BS11 CLA ? GO:0009507 ... A0A2K1K0E4 37474782
    822574 8htu:4 (2.87) BS12 CLA ? GO:0009507 ... A0A2K1K0E4 37474782
    822575 8htu:4 (2.87) BS13 CLA ? GO:0009507 ... A0A2K1K0E4 37474782
    822576 8htu:4 (2.87) BS14 CHL ? GO:0009507 ... A0A2K1K0E4 37474782
    822577 8htu:5 (2.87) BS01 CHL ? GO:0009416 ... A0A2K1JLZ3 37474782
    822578 8htu:5 (2.87) BS02 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822579 8htu:5 (2.87) BS03 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822580 8htu:5 (2.87) BS04 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822581 8htu:5 (2.87) BS05 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822582 8htu:5 (2.87) BS06 CHL ? GO:0009416 ... A0A2K1JLZ3 37474782
    822583 8htu:5 (2.87) BS07 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822584 8htu:5 (2.87) BS08 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822585 8htu:5 (2.87) BS09 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822586 8htu:5 (2.87) BS10 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822587 8htu:5 (2.87) BS11 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822588 8htu:5 (2.87) BS12 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822589 8htu:5 (2.87) BS13 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822590 8htu:5 (2.87) BS14 CLA ? GO:0009416 ... A0A2K1JLZ3 37474782
    822591 8htu:6 (2.87) BS01 CHL ? GO:0009416 ... A9TJ06 37474782
    822592 8htu:6 (2.87) BS02 CHL ? GO:0009416 ... A9TJ06 37474782
    822593 8htu:6 (2.87) BS03 CLA ? GO:0009416 ... A9TJ06 37474782
    822594 8htu:6 (2.87) BS04 CLA ? GO:0009416 ... A9TJ06 37474782
    822595 8htu:6 (2.87) BS05 CHL ? GO:0009416 ... A9TJ06 37474782
    822596 8htu:6 (2.87) BS06 CHL ? GO:0009416 ... A9TJ06 37474782
    822597 8htu:6 (2.87) BS07 CHL ? GO:0009416 ... A9TJ06 37474782
    822598 8htu:6 (2.87) BS08 CLA ? GO:0009416 ... A9TJ06 37474782
    822599 8htu:6 (2.87) BS09 CLA ? GO:0009416 ... A9TJ06 37474782
    822600 8htu:6 (2.87) BS10 CLA ? GO:0009416 ... A9TJ06 37474782

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).