SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    823001 8h6e:5e (3.2) BS01 rna ? GO:0000244 ... P62304 38658629
    823002 8h6e:5f (3.2) BS01 rna ? GO:0000244 ... P62308 38658629
    823003 8h6e:5g (3.2) BS01 rna ? GO:0000243 ... P62318 38658629
    823004 8h6e:6a (3.2) BS01 rna ? GO:0000244 ... Q9Y333 38658629
    823005 8h6e:6g (3.2) BS01 rna ? GO:0000244 ... O95777 38658629
    823006 8h6i:A (1.9) BS01 ODN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37696289
    823007 8h6j:2C (3.25) BS01 rna ? GO:0000387 ... P08579 38658629
    823008 8h6j:2F (3.25) BS01 rna ? GO:0000375 ... Q12874 38658629
    823009 8h6j:2G (3.25) BS01 rna ? GO:0000245 ... O75533 38658629
    823010 8h6j:2G (3.25) BS02 rna ? GO:0000245 ... O75533 38658629
    823011 8h6j:2c (3.25) BS01 rna ? GO:0000244 ... P62316 38658629
    823012 8h6j:2f (3.25) BS01 rna ? GO:0000244 ... P62308 38658629
    823013 8h6j:2g (3.25) BS01 rna ? GO:0000243 ... P62318 38658629
    823014 8h6j:4B (3.25) BS01 rna ? GO:0000244 ... O43395 38658629
    823015 8h6j:4B (3.25) BS02 rna ? GO:0000244 ... O43395 38658629
    823016 8h6j:4E (3.25) BS01 rna ? GO:0000244 ... P55769 38658629
    823017 8h6j:4G (3.25) BS01 rna ? GO:0000244 ... O94906 38658629
    823018 8h6j:4R (3.25) BS01 rna ? GO:0000387 ... Q9BTD8 38658629
    823019 8h6j:4R (3.25) BS02 rna ? GO:0000387 ... Q9BTD8 38658629
    823020 8h6j:4S (3.25) BS01 rna ? GO:0000244 ... O43290 38658629
    823021 8h6j:4S (3.25) BS02 peptide ? GO:0000244 ... O43290 38658629
    823022 8h6j:4T (3.25) BS01 ZN 3.4.19.12 GO:0000244 ... Q53GS9 38658629
    823023 8h6j:4a (3.25) BS01 rna ? GO:0000244 ... P14678 38658629
    823024 8h6j:4b (3.25) BS01 rna ? GO:0000243 ... P62314 38658629
    823025 8h6j:4c (3.25) BS01 rna ? GO:0000244 ... P62316 38658629
    823026 8h6j:4d (3.25) BS01 rna ? GO:0000244 ... P62306 38658629
    823027 8h6j:4e (3.25) BS01 rna ? GO:0000244 ... P62304 38658629
    823028 8h6j:4f (3.25) BS01 rna ? GO:0000244 ... P62308 38658629
    823029 8h6j:4g (3.25) BS01 rna ? GO:0000243 ... P62318 38658629
    823030 8h6j:5B (3.25) BS01 rna ? GO:0000244 ... Q6P2Q9 38658629
    823031 8h6j:5B (3.25) BS02 peptide ? GO:0000244 ... Q6P2Q9 38658629
    823032 8h6j:5B (3.25) BS03 IHP ? GO:0000244 ... Q6P2Q9 38658629
    823033 8h6j:5C (3.25) BS01 MG ? GO:0000244 ... Q15029 38658629
    823034 8h6j:5C (3.25) BS02 GTP ? GO:0000244 ... Q15029 38658629
    823035 8h6j:5a (3.25) BS01 rna ? GO:0000244 ... P14678 38658629
    823036 8h6j:5b (3.25) BS01 rna ? GO:0000243 ... P62314 38658629
    823037 8h6j:5c (3.25) BS01 rna ? GO:0000244 ... P62316 38658629
    823038 8h6j:5d (3.25) BS01 rna ? GO:0000244 ... P62306 38658629
    823039 8h6j:5e (3.25) BS01 rna ? GO:0000244 ... P62304 38658629
    823040 8h6j:5f (3.25) BS01 rna ? GO:0000244 ... P62308 38658629
    823041 8h6j:5g (3.25) BS01 rna ? GO:0000243 ... P62318 38658629
    823042 8h6j:6a (3.25) BS01 rna ? GO:0000244 ... Q9Y333 38658629
    823043 8h6j:6g (3.25) BS01 rna ? GO:0000244 ... O95777 38658629
    823044 8h6k:2C (2.7) BS01 rna ? GO:0000387 ... P08579 38658629
    823045 8h6k:2D (2.7) BS01 rna ? GO:0000387 ... Q15459 38658629
    823046 8h6k:2F (2.7) BS01 rna ? GO:0000375 ... Q12874 38658629
    823047 8h6k:2G (2.7) BS01 rna ? GO:0000245 ... O75533 38658629
    823048 8h6k:2G (2.7) BS02 rna ? GO:0000245 ... O75533 38658629
    823049 8h6k:2c (2.7) BS01 rna ? GO:0000244 ... P62316 38658629
    823050 8h6k:2f (2.7) BS01 rna ? GO:0000244 ... P62308 38658629
    823051 8h6k:2g (2.7) BS01 rna ? GO:0000243 ... P62318 38658629
    823052 8h6k:4B (2.7) BS01 rna ? GO:0000244 ... O43395 38658629
    823053 8h6k:4B (2.7) BS02 rna ? GO:0000244 ... O43395 38658629
    823054 8h6k:4D (2.7) BS01 rna ? GO:0000244 ... Q8WWY3 38658629
    823055 8h6k:4D (2.7) BS02 rna ? GO:0000244 ... Q8WWY3 38658629
    823056 8h6k:4E (2.7) BS01 rna ? GO:0000244 ... P55769 38658629
    823057 8h6k:4E (2.7) BS02 rna ? GO:0000244 ... P55769 38658629
    823058 8h6k:4F (2.7) BS01 rna ? GO:0000245 ... P83876 38658629
    823059 8h6k:4F (2.7) BS02 rna ? GO:0000245 ... P83876 38658629
    823060 8h6k:4G (2.7) BS01 rna ? GO:0000244 ... O94906 38658629
    823061 8h6k:4G (2.7) BS02 rna ? GO:0000244 ... O94906 38658629
    823062 8h6k:4I (2.7) BS01 rna ? GO:0000398 ... O75554 38658629
    823063 8h6k:4I (2.7) BS02 ZN ? GO:0000398 ... O75554 38658629
    823064 8h6k:4K (2.7) BS01 rna ? GO:0000398 ... P55081 38658629
    823065 8h6k:4K (2.7) BS02 rna ? GO:0000398 ... P55081 38658629
    823066 8h6k:4N (2.7) BS01 rna ? GO:0000398 ... Q96NC0 38658629
    823067 8h6k:4N (2.7) BS02 rna ? GO:0000398 ... Q96NC0 38658629
    823068 8h6k:4N (2.7) BS03 ZN ? GO:0000398 ... Q96NC0 38658629
    823069 8h6k:4c (2.7) BS01 rna ? GO:0000244 ... P62316 38658629
    823070 8h6k:4d (2.7) BS01 rna ? GO:0000244 ... P62306 38658629
    823071 8h6k:4f (2.7) BS01 rna ? GO:0000244 ... P62308 38658629
    823072 8h6k:5B (2.7) BS01 rna ? GO:0000244 ... Q6P2Q9 38658629
    823073 8h6k:5B (2.7) BS02 rna ? GO:0000244 ... Q6P2Q9 38658629
    823074 8h6k:5B (2.7) BS03 rna ? GO:0000244 ... Q6P2Q9 38658629
    823075 8h6k:5B (2.7) BS04 rna ? GO:0000244 ... Q6P2Q9 38658629
    823076 8h6k:5B (2.7) BS05 IHP ? GO:0000244 ... Q6P2Q9 38658629
    823077 8h6k:5C (2.7) BS01 GTP ? GO:0000244 ... Q15029 38658629
    823078 8h6k:5D (2.7) BS01 rna 3.6.4.13 GO:0000244 ... O75643 38658629
    823079 8h6k:5E (2.7) BS01 rna ? GO:0000244 ... Q96DI7 38658629
    823080 8h6k:5a (2.7) BS01 rna ? GO:0000244 ... P14678 38658629
    823081 8h6k:5b (2.7) BS01 rna ? GO:0000243 ... P62314 38658629
    823082 8h6k:5c (2.7) BS01 rna ? GO:0000244 ... P62316 38658629
    823083 8h6k:5d (2.7) BS01 rna ? GO:0000244 ... P62306 38658629
    823084 8h6k:5e (2.7) BS01 rna ? GO:0000244 ... P62304 38658629
    823085 8h6k:5f (2.7) BS01 rna ? GO:0000244 ... P62308 38658629
    823086 8h6k:5g (2.7) BS01 rna ? GO:0000243 ... P62318 38658629
    823087 8h6k:6a (2.7) BS01 rna ? GO:0000244 ... Q9Y333 38658629
    823088 8h6k:6g (2.7) BS01 rna ? GO:0000244 ... O95777 38658629
    823089 8h6l:2C (2.6) BS01 rna ? GO:0000387 ... P08579 38658629
    823090 8h6l:2D (2.6) BS01 rna ? GO:0000387 ... Q15459 38658629
    823091 8h6l:2D (2.6) BS02 rna ? GO:0000387 ... Q15459 38658629
    823092 8h6l:2F (2.6) BS01 rna ? GO:0000375 ... Q12874 38658629
    823093 8h6l:2G (2.6) BS01 rna ? GO:0000245 ... O75533 38658629
    823094 8h6l:2G (2.6) BS02 rna ? GO:0000245 ... O75533 38658629
    823095 8h6l:2c (2.6) BS01 rna ? GO:0000244 ... P62316 38658629
    823096 8h6l:2f (2.6) BS01 rna ? GO:0000244 ... P62308 38658629
    823097 8h6l:2g (2.6) BS01 rna ? GO:0000243 ... P62318 38658629
    823098 8h6l:4B (2.6) BS01 rna ? GO:0000244 ... O43395 38658629
    823099 8h6l:4B (2.6) BS02 rna ? GO:0000244 ... O43395 38658629
    823100 8h6l:4D (2.6) BS01 rna ? GO:0000244 ... Q8WWY3 38658629
    823101 8h6l:4D (2.6) BS02 rna ? GO:0000244 ... Q8WWY3 38658629
    823102 8h6l:4E (2.6) BS01 rna ? GO:0000244 ... P55769 38658629
    823103 8h6l:4E (2.6) BS02 rna ? GO:0000244 ... P55769 38658629
    823104 8h6l:4F (2.6) BS01 rna ? GO:0000245 ... P83876 38658629
    823105 8h6l:4F (2.6) BS02 rna ? GO:0000245 ... P83876 38658629
    823106 8h6l:4G (2.6) BS01 rna ? GO:0000244 ... O94906 38658629
    823107 8h6l:4G (2.6) BS02 rna ? GO:0000244 ... O94906 38658629
    823108 8h6l:4G (2.6) BS03 rna ? GO:0000244 ... O94906 38658629
    823109 8h6l:4I (2.6) BS01 rna ? GO:0000398 ... O75554 38658629
    823110 8h6l:4I (2.6) BS02 ZN ? GO:0000398 ... O75554 38658629
    823111 8h6l:4c (2.6) BS01 rna ? GO:0000244 ... P62316 38658629
    823112 8h6l:4d (2.6) BS01 rna ? GO:0000244 ... P62306 38658629
    823113 8h6l:4f (2.6) BS01 rna ? GO:0000244 ... P62308 38658629
    823114 8h6l:5B (2.6) BS01 rna ? GO:0000244 ... Q6P2Q9 38658629
    823115 8h6l:5B (2.6) BS02 rna ? GO:0000244 ... Q6P2Q9 38658629
    823116 8h6l:5B (2.6) BS03 rna ? GO:0000244 ... Q6P2Q9 38658629
    823117 8h6l:5B (2.6) BS04 rna ? GO:0000244 ... Q6P2Q9 38658629
    823118 8h6l:5B (2.6) BS05 IHP ? GO:0000244 ... Q6P2Q9 38658629
    823119 8h6l:5C (2.6) BS01 GTP ? GO:0000244 ... Q15029 38658629
    823120 8h6l:5D (2.6) BS01 rna 3.6.4.13 GO:0000244 ... O75643 38658629
    823121 8h6l:5E (2.6) BS01 rna ? GO:0000244 ... Q96DI7 38658629
    823122 8h6l:5a (2.6) BS01 rna ? GO:0000244 ... P14678 38658629
    823123 8h6l:5b (2.6) BS01 rna ? GO:0000243 ... P62314 38658629
    823124 8h6l:5c (2.6) BS01 rna ? GO:0000244 ... P62316 38658629
    823125 8h6l:5d (2.6) BS01 rna ? GO:0000244 ... P62306 38658629
    823126 8h6l:5e (2.6) BS01 rna ? GO:0000244 ... P62304 38658629
    823127 8h6l:5f (2.6) BS01 rna ? GO:0000244 ... P62308 38658629
    823128 8h6l:5g (2.6) BS01 rna ? GO:0000243 ... P62318 38658629
    823129 8h6l:6a (2.6) BS01 rna ? GO:0000244 ... Q9Y333 38658629
    823130 8h6l:6g (2.6) BS01 rna ? GO:0000244 ... O95777 38658629
    823131 8h6n:A (1.65) BS01 4WI 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37696289
    823132 8h6n:A (1.65) BS02 LQZ 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37696289
    823133 8h6p:A (2.44) BS01 WZU 2.7.11.22 GO:0000082 ... P24941 36923916
    823134 8h6s:A (3.0) BS01 MG 2.3.1.39 GO:0004314 ... Q76KY5 36512613
    823135 8h6s:A (3.0) BS02 9EF 2.3.1.39 GO:0004314 ... Q76KY5 36512613
    823136 8h6s:B (3.0) BS01 MG 2.3.1.39 GO:0004314 ... Q76KY5 36512613
    823137 8h6s:B (3.0) BS02 9EF 2.3.1.39 GO:0004314 ... Q76KY5 36512613
    823138 8h6t:A (3.0) BS01 WZZ 2.7.11.22 GO:0000082 ... P24941 36923916
    823139 8h6u:A (2.78) BS01 MG 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    823140 8h6u:A (2.78) BS02 MG 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    823141 8h6u:A (2.78) BS03 POP 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    823142 8h6u:A (2.78) BS04 BTM 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    823143 8h6u:B (2.78) BS01 MG 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    823144 8h6u:B (2.78) BS02 MG 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    823145 8h6u:B (2.78) BS03 POP 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    823146 8h6u:B (2.78) BS04 BTM 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    823147 8h6u:C (2.78) BS01 MG 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    823148 8h6u:C (2.78) BS02 MG 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    823149 8h6u:C (2.78) BS03 POP 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    823150 8h6u:C (2.78) BS04 BTM 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    823151 8h6u:D (2.78) BS01 MG 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    823152 8h6u:D (2.78) BS02 MG 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    823153 8h6u:D (2.78) BS03 POP 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    823154 8h6u:D (2.78) BS04 BTM 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    823155 8h72:A (2.09) BS01 MG 4.2.3.135 GO:0010333 ... A0A4S8MAF3 37018048
    823156 8h72:A (2.09) BS02 BTM 4.2.3.135 GO:0010333 ... A0A4S8MAF3 37018048
    823157 8h72:B (2.09) BS01 MG 4.2.3.135 GO:0010333 ... A0A4S8MAF3 37018048
    823158 8h72:B (2.09) BS02 BTM 4.2.3.135 GO:0010333 ... A0A4S8MAF3 37018048
    823159 8h75:A (3.75) BS01 KX0 2.7.10.1 GO:0004672 ... P21802 N/A
    823160 8h75:B (3.75) BS01 KX0 2.7.10.1 GO:0004672 ... P21802 N/A
    823161 8h75:C (3.75) BS01 KX0 2.7.10.1 GO:0004672 ... P21802 N/A
    823162 8h75:D (3.75) BS01 KX0 2.7.10.1 GO:0004672 ... P21802 N/A
    823163 8h77:A (3.2) BS01 ADP ? GO:0001890 ... P11499 36649707
    823164 8h77:A (3.2) BS02 BEF ? GO:0001890 ... P11499 36649707
    823165 8h77:B (3.2) BS01 ADP ? GO:0001890 ... P11499 36649707
    823166 8h77:B (3.2) BS02 BEF ? GO:0001890 ... P11499 36649707
    823167 8h78:A (2.4) BS01 ZN 3.4.24.24 GO:0004222 ... P08253 36595440
    823168 8h78:A (2.4) BS02 ZN 3.4.24.24 GO:0004222 ... P08253 36595440
    823169 8h78:A (2.4) BS03 CA 3.4.24.24 GO:0004222 ... P08253 36595440
    823170 8h78:A (2.4) BS04 CA 3.4.24.24 GO:0004222 ... P08253 36595440
    823171 8h78:A (2.4) BS05 CA 3.4.24.24 GO:0004222 ... P08253 36595440
    823172 8h78:A (2.4) BS06 L2U 3.4.24.24 GO:0004222 ... P08253 36595440
    823173 8h78:B (2.4) BS01 ZN 3.4.24.24 GO:0004222 ... P08253 36595440
    823174 8h78:B (2.4) BS02 ZN 3.4.24.24 GO:0004222 ... P08253 36595440
    823175 8h78:B (2.4) BS03 CA 3.4.24.24 GO:0004222 ... P08253 36595440
    823176 8h78:B (2.4) BS04 CA 3.4.24.24 GO:0004222 ... P08253 36595440
    823177 8h78:B (2.4) BS05 CA 3.4.24.24 GO:0004222 ... P08253 36595440
    823178 8h78:B (2.4) BS06 L2U 3.4.24.24 GO:0004222 ... P08253 36595440
    823179 8h79:A (2.07) BS01 RET N/A GO:0005216 ... A0AAJ6N6B2 39485071
    823180 8h7a:A (1.92) BS01 dna 2.3.1.48 GO:0003677 ... Q92794 36537216
    823181 8h7a:A (1.92) BS02 dna 2.3.1.48 GO:0003677 ... Q92794 36537216
    823182 8h7a:B (1.92) BS01 dna 2.3.1.48 GO:0003677 ... Q92794 36537216
    823183 8h7a:B (1.92) BS02 dna 2.3.1.48 GO:0003677 ... Q92794 36537216
    823184 8h7a:E (1.92) BS01 dna 2.3.1.48 GO:0003677 ... Q92794 36537216
    823185 8h7a:E (1.92) BS02 dna 2.3.1.48 GO:0003677 ... Q92794 36537216
    823186 8h7a:F (1.92) BS01 dna 2.3.1.48 GO:0003677 ... Q92794 36537216
    823187 8h7a:F (1.92) BS02 dna 2.3.1.48 GO:0003677 ... Q92794 36537216
    823188 8h7b:A (1.46408) BS01 QHR ? GO:0042981 ... Q07820 36774655
    823189 8h7b:B (1.46408) BS01 QHR ? GO:0042981 ... Q07820 36774655
    823190 8h7b:B (1.46408) BS02 QHR ? GO:0042981 ... Q07820 36774655
    823191 8h7f:A (2.45013) BS01 QEW 2.7.10.2 GO:0004672 ... P00519 36774655
    823192 8h7f:B (2.45013) BS01 QEW 2.7.10.2 GO:0004672 ... P00519 36774655
    823193 8h7g:K (3.7) BS01 peptide ? GO:0000118 ... Q9Y6J9 36414614
    823194 8h7h:A (2.2779) BS01 QH9 2.7.10.2 GO:0004672 ... P00519 36774655
    823195 8h7h:B (2.2779) BS01 QH9 2.7.10.2 GO:0004672 ... P00519 36774655
    823196 8h7i:A (2.4) BS01 WYN N/A N/A N/A 37428097
    823197 8h7i:B (2.4) BS01 WYN N/A N/A N/A 37428097
    823198 8h7k:A (1.45) BS01 peptide 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTC1 37696289
    823199 8h7m:A (1.87) BS01 WYS N/A N/A N/A 37428097
    823200 8h7m:B (1.87) BS01 WYS N/A N/A N/A 37428097

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
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