SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    823801 8i09:F (1.8) BS02 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823802 8i09:F (1.8) BS03 NF0 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823803 8i09:F (1.8) BS04 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823804 8i09:G (1.8) BS01 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823805 8i09:G (1.8) BS02 NF0 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823806 8i09:G (1.8) BS03 NF0 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823807 8i09:G (1.8) BS04 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823808 8i09:H (1.8) BS01 NF0 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823809 8i09:H (1.8) BS02 NF0 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823810 8i09:H (1.8) BS03 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823811 8i09:I (1.8) BS01 NF0 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823812 8i09:I (1.8) BS02 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823813 8i09:I (1.8) BS03 NF0 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823814 8i09:I (1.8) BS04 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823815 8i09:J (1.8) BS01 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823816 8i09:J (1.8) BS02 NF0 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823817 8i09:J (1.8) BS03 NF0 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823818 8i09:K (1.8) BS01 NF0 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823819 8i09:K (1.8) BS02 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823820 8i09:K (1.8) BS03 NF0 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823821 8i09:L (1.8) BS01 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823822 8i09:L (1.8) BS02 NF0 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823823 8i09:L (1.8) BS03 NF0 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    823824 8i0b:A (1.73) BS01 NXO ? GO:0015276 ... P42262 N/A
    823825 8i0b:B (1.73) BS01 NXO ? GO:0015276 ... P42262 N/A
    823826 8i0c:A (2.33) BS01 NAP 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64
    GO:0001523 ... P42330 37409679
    823827 8i0c:A (2.33) BS02 JTN 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64
    GO:0001523 ... P42330 37409679
    823828 8i0c:B (2.33) BS01 NAP 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64
    GO:0001523 ... P42330 37409679
    823829 8i0c:B (2.33) BS02 JTN 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64
    GO:0001523 ... P42330 37409679
    823830 8i0d:A (1.43) BS01 UPG 2.4.1.- GO:0008194 ... A0A482AQV3 37863881
    823831 8i0e:A (1.9) BS01 UDP 2.4.1.- GO:0008194 ... A0A482AQV3 37863881
    823832 8i0g:A (1.992) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    823833 8i0g:A (1.992) BS02 O6R 1.13.11.27 GO:0003868 ... P93836 N/A
    823834 8i0h:A () BS01 peptide N/A N/A N/A N/A
    823835 8i0h:A () BS02 DTP N/A N/A N/A N/A
    823836 8i0h:A () BS03 DUT N/A N/A N/A N/A
    823837 8i0h:A () BS04 DGT N/A N/A N/A N/A
    823838 8i0i:A () BS01 DTP N/A N/A N/A N/A
    823839 8i0i:A () BS02 DUT N/A N/A N/A N/A
    823840 8i0i:A () BS03 DUT N/A N/A N/A N/A
    823841 8i0i:C () BS01 DUT N/A N/A N/A N/A
    823842 8i0i:C () BS02 DTP N/A N/A N/A N/A
    823843 8i0i:C () BS03 DUT N/A N/A N/A N/A
    823844 8i0i:D () BS01 DTP N/A N/A N/A N/A
    823845 8i0i:D () BS02 DUT N/A N/A N/A N/A
    823846 8i0i:D () BS03 DUT N/A N/A N/A N/A
    823847 8i0i:E () BS01 DUT N/A N/A N/A N/A
    823848 8i0i:E () BS02 DTP N/A N/A N/A N/A
    823849 8i0i:E () BS03 DUT N/A N/A N/A N/A
    823850 8i0k:A (2.86) BS01 MG 1.2.4.2 GO:0016624 ... Q02218 N/A
    823851 8i0k:A (2.86) BS02 TPP 1.2.4.2 GO:0016624 ... Q02218 N/A
    823852 8i0k:B (2.86) BS01 TPP 1.2.4.2 GO:0016624 ... Q02218 N/A
    823853 8i0k:B (2.86) BS02 MG 1.2.4.2 GO:0016624 ... Q02218 N/A
    823854 8i0k:B (2.86) BS03 8EL 1.2.4.2 GO:0016624 ... Q02218 N/A
    823855 8i0k:B (2.86) BS04 CA 1.2.4.2 GO:0016624 ... Q02218 N/A
    823856 8i0l:A (3.6) BS01 NJ6 2.7.11.22
    2.7.11.23
    GO:0004672 ... P50750 N/A
    823857 8i0m:A (2.7772) BS01 NJ6 2.7.11.22 GO:0000082 ... Q00534 N/A
    823858 8i0n:A (3.26) BS01 peptide ? GO:0000785 ... P29066 37209686
    823859 8i0n:B (3.26) BS01 peptide ? GO:0000785 ... P29066 37209686
    823860 8i0n:L (3.26) BS01 peptide N/A N/A N/A 37209686
    823861 8i0n:M (3.26) BS01 peptide N/A N/A N/A 37209686
    823862 8i0p:1 (3.4) BS01 rna N/A GO:0000245 ... O75533 39068178
    823863 8i0p:1 (3.4) BS02 rna N/A GO:0000245 ... O75533 39068178
    823864 8i0p:2 (3.4) BS01 rna N/A GO:0000398 ... Q13435 39068178
    823865 8i0p:7 (3.4) BS01 rna N/A GO:0000398 ... Q7RTV0 39068178
    823866 8i0p:7 (3.4) BS02 ZN N/A GO:0000398 ... Q7RTV0 39068178
    823867 8i0p:7 (3.4) BS03 ZN N/A GO:0000398 ... Q7RTV0 39068178
    823868 8i0p:7 (3.4) BS04 ZN N/A GO:0000398 ... Q7RTV0 39068178
    823869 8i0p:A (3.4) BS01 rna N/A GO:0000244 ... Q6P2Q9 39068178
    823870 8i0p:A (3.4) BS02 rna N/A GO:0000244 ... Q6P2Q9 39068178
    823871 8i0p:A (3.4) BS03 rna N/A GO:0000244 ... Q6P2Q9 39068178
    823872 8i0p:A (3.4) BS04 rna N/A GO:0000244 ... Q6P2Q9 39068178
    823873 8i0p:A (3.4) BS05 peptide N/A GO:0000244 ... Q6P2Q9 39068178
    823874 8i0p:C (3.4) BS01 GTP N/A GO:0000398 ... Q15029 39068178
    823875 8i0p:C (3.4) BS02 MG N/A GO:0000398 ... Q15029 39068178
    823876 8i0p:E (3.4) BS01 rna N/A GO:0000375 ... Q96DI7 39068178
    823877 8i0p:K (3.4) BS01 rna N/A GO:0003677 ... O60870 39068178
    823878 8i0p:K (3.4) BS02 rna N/A GO:0003677 ... O60870 39068178
    823879 8i0p:K (3.4) BS03 ZN N/A GO:0003677 ... O60870 39068178
    823880 8i0p:L (3.4) BS01 rna N/A GO:0000077 ... Q99459 39068178
    823881 8i0p:N (3.4) BS01 rna N/A GO:0000398 ... P41223 39068178
    823882 8i0p:O (3.4) BS01 rna N/A GO:0000398 ... Q9NW64 39068178
    823883 8i0p:O (3.4) BS02 rna N/A GO:0000398 ... Q9NW64 39068178
    823884 8i0p:T (3.4) BS01 rna N/A GO:0000398 ... O43660 39068178
    823885 8i0p:Y (3.4) BS01 rna N/A GO:0000398 ... Q9Y388 39068178
    823886 8i0p:a (3.4) BS01 rna N/A GO:0000387 ... P14678 39068178
    823887 8i0p:b (3.4) BS01 rna N/A GO:0000243 ... P62314 39068178
    823888 8i0p:c (3.4) BS01 rna N/A GO:0000245 ... P62316 39068178
    823889 8i0p:d (3.4) BS01 rna N/A GO:0000387 ... P62306 39068178
    823890 8i0p:e (3.4) BS01 rna N/A GO:0000245 ... P62304 39068178
    823891 8i0p:g (3.4) BS01 rna N/A GO:0000243 ... P62318 39068178
    823892 8i0p:h (3.4) BS01 rna N/A GO:0000245 ... P62316 39068178
    823893 8i0p:j (3.4) BS01 rna N/A GO:0000245 ... P62304 39068178
    823894 8i0p:k (3.4) BS01 rna N/A GO:0000245 ... P62308 39068178
    823895 8i0p:l (3.4) BS01 rna N/A GO:0000243 ... P62318 39068178
    823896 8i0p:m (3.4) BS01 rna N/A GO:0000387 ... P14678 39068178
    823897 8i0p:n (3.4) BS01 rna N/A GO:0000243 ... P62314 39068178
    823898 8i0p:o (3.4) BS01 rna N/A GO:0000398 ... P09661 39068178
    823899 8i0p:p (3.4) BS01 rna N/A GO:0000398 ... P08579 39068178
    823900 8i0p:v (3.4) BS01 rna N/A GO:0000245 ... Q15428 39068178
    823901 8i0p:w (3.4) BS01 rna N/A GO:0000375 ... Q12874 39068178
    823902 8i0p:w (3.4) BS02 rna N/A GO:0000375 ... Q12874 39068178
    823903 8i0q:A (4.45) BS01 peptide ? GO:0000785 ... P29066 37209686
    823904 8i0q:B (4.45) BS01 peptide ? GO:0000785 ... P29066 37209686
    823905 8i0q:L (4.45) BS01 peptide N/A N/A N/A 37209686
    823906 8i0q:M (4.45) BS01 peptide N/A N/A N/A 37209686
    823907 8i0r:1 (3.0) BS01 rna N/A GO:0000245 ... O75533 39068178
    823908 8i0r:1 (3.0) BS02 rna N/A GO:0000245 ... O75533 39068178
    823909 8i0r:2 (3.0) BS01 rna N/A GO:0000398 ... Q13435 39068178
    823910 8i0r:2 (3.0) BS02 rna N/A GO:0000398 ... Q13435 39068178
    823911 8i0r:7 (3.0) BS01 rna N/A GO:0000398 ... Q7RTV0 39068178
    823912 8i0r:7 (3.0) BS02 ZN N/A GO:0000398 ... Q7RTV0 39068178
    823913 8i0r:7 (3.0) BS03 ZN N/A GO:0000398 ... Q7RTV0 39068178
    823914 8i0r:7 (3.0) BS04 ZN N/A GO:0000398 ... Q7RTV0 39068178
    823915 8i0r:A (3.0) BS01 rna N/A GO:0000244 ... Q6P2Q9 39068178
    823916 8i0r:A (3.0) BS02 rna N/A GO:0000244 ... Q6P2Q9 39068178
    823917 8i0r:A (3.0) BS03 rna N/A GO:0000244 ... Q6P2Q9 39068178
    823918 8i0r:A (3.0) BS04 rna N/A GO:0000244 ... Q6P2Q9 39068178
    823919 8i0r:A (3.0) BS05 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    823920 8i0r:C (3.0) BS01 rna N/A GO:0000398 ... Q15029 39068178
    823921 8i0r:C (3.0) BS02 GTP N/A GO:0000398 ... Q15029 39068178
    823922 8i0r:J (3.0) BS01 rna N/A GO:0000245 ... Q9BZJ0 39068178
    823923 8i0r:J (3.0) BS02 rna N/A GO:0000245 ... Q9BZJ0 39068178
    823924 8i0r:K (3.0) BS01 rna N/A GO:0000398 ... O15541 39068178
    823925 8i0r:K (3.0) BS02 ZN N/A GO:0000398 ... O15541 39068178
    823926 8i0r:L (3.0) BS01 rna N/A GO:0000077 ... Q99459 39068178
    823927 8i0r:N (3.0) BS01 rna N/A GO:0000398 ... P41223 39068178
    823928 8i0r:N (3.0) BS02 ZN N/A GO:0000398 ... P41223 39068178
    823929 8i0r:N (3.0) BS03 ZN N/A GO:0000398 ... P41223 39068178
    823930 8i0r:N (3.0) BS04 ZN N/A GO:0000398 ... P41223 39068178
    823931 8i0r:O (3.0) BS01 rna N/A GO:0000398 ... Q9NW64 39068178
    823932 8i0r:O (3.0) BS02 rna N/A GO:0000398 ... Q9NW64 39068178
    823933 8i0r:T (3.0) BS01 rna N/A GO:0000398 ... O43660 39068178
    823934 8i0r:U (3.0) BS01 rna N/A GO:0000398 ... Q9UQ35 39068178
    823935 8i0r:Y (3.0) BS01 rna N/A GO:0000398 ... Q9Y388 39068178
    823936 8i0r:a (3.0) BS01 rna N/A GO:0000387 ... P14678 39068178
    823937 8i0r:b (3.0) BS01 rna N/A GO:0000243 ... P62314 39068178
    823938 8i0r:c (3.0) BS01 rna N/A GO:0000245 ... P62316 39068178
    823939 8i0r:d (3.0) BS01 rna N/A GO:0000387 ... P62306 39068178
    823940 8i0r:e (3.0) BS01 rna N/A GO:0000245 ... P62304 39068178
    823941 8i0r:g (3.0) BS01 rna N/A GO:0000243 ... P62318 39068178
    823942 8i0r:h (3.0) BS01 rna N/A GO:0000245 ... P62316 39068178
    823943 8i0r:j (3.0) BS01 rna N/A GO:0000245 ... P62304 39068178
    823944 8i0r:k (3.0) BS01 rna N/A GO:0000245 ... P62308 39068178
    823945 8i0r:l (3.0) BS01 rna N/A GO:0000243 ... P62318 39068178
    823946 8i0r:m (3.0) BS01 rna N/A GO:0000387 ... P14678 39068178
    823947 8i0r:n (3.0) BS01 rna N/A GO:0000243 ... P62314 39068178
    823948 8i0r:o (3.0) BS01 rna N/A GO:0000398 ... P09661 39068178
    823949 8i0r:p (3.0) BS01 rna N/A GO:0000398 ... P08579 39068178
    823950 8i0r:v (3.0) BS01 rna N/A GO:0000245 ... Q15428 39068178
    823951 8i0r:v (3.0) BS02 rna N/A GO:0000245 ... Q15428 39068178
    823952 8i0r:v (3.0) BS03 rna N/A GO:0000245 ... Q15428 39068178
    823953 8i0r:w (3.0) BS01 rna N/A GO:0000375 ... Q12874 39068178
    823954 8i0r:w (3.0) BS02 rna N/A GO:0000375 ... Q12874 39068178
    823955 8i0s:1 (4.2) BS01 rna N/A GO:0000245 ... O75533 39068178
    823956 8i0s:1 (4.2) BS02 rna N/A GO:0000245 ... O75533 39068178
    823957 8i0s:2 (4.2) BS01 rna N/A GO:0000398 ... Q13435 39068178
    823958 8i0s:7 (4.2) BS01 ZN N/A GO:0000398 ... Q7RTV0 39068178
    823959 8i0s:7 (4.2) BS02 ZN N/A GO:0000398 ... Q7RTV0 39068178
    823960 8i0s:7 (4.2) BS03 ZN N/A GO:0000398 ... Q7RTV0 39068178
    823961 8i0s:A (4.2) BS01 rna N/A GO:0000244 ... Q6P2Q9 39068178
    823962 8i0s:A (4.2) BS02 rna N/A GO:0000244 ... Q6P2Q9 39068178
    823963 8i0s:A (4.2) BS03 rna N/A GO:0000244 ... Q6P2Q9 39068178
    823964 8i0s:A (4.2) BS04 rna N/A GO:0000244 ... Q6P2Q9 39068178
    823965 8i0s:A (4.2) BS05 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    823966 8i0s:C (4.2) BS01 rna N/A GO:0000398 ... Q15029 39068178
    823967 8i0s:C (4.2) BS02 GTP N/A GO:0000398 ... Q15029 39068178
    823968 8i0s:C (4.2) BS03 MG N/A GO:0000398 ... Q15029 39068178
    823969 8i0s:J (4.2) BS01 rna N/A GO:0000245 ... Q9BZJ0 39068178
    823970 8i0s:K (4.2) BS01 rna N/A GO:0000398 ... O15541 39068178
    823971 8i0s:K (4.2) BS02 ZN N/A GO:0000398 ... O15541 39068178
    823972 8i0s:L (4.2) BS01 rna N/A GO:0000077 ... Q99459 39068178
    823973 8i0s:N (4.2) BS01 rna N/A GO:0000398 ... P41223 39068178
    823974 8i0s:N (4.2) BS02 ZN N/A GO:0000398 ... P41223 39068178
    823975 8i0s:N (4.2) BS03 ZN N/A GO:0000398 ... P41223 39068178
    823976 8i0s:O (4.2) BS01 rna N/A GO:0000398 ... Q9NW64 39068178
    823977 8i0s:O (4.2) BS02 rna N/A GO:0000398 ... Q9NW64 39068178
    823978 8i0s:P (4.2) BS01 rna N/A GO:0000398 ... Q9P013 39068178
    823979 8i0s:R (4.2) BS01 rna N/A GO:0000122 ... Q13573 39068178
    823980 8i0s:R (4.2) BS02 rna N/A GO:0000122 ... Q13573 39068178
    823981 8i0s:U (4.2) BS01 rna N/A GO:0000398 ... Q9UQ35 39068178
    823982 8i0s:X (4.2) BS01 rna N/A GO:0000398 ... O60231 39068178
    823983 8i0s:Y (4.2) BS01 rna N/A GO:0000413 ... Q8WUA2 39068178
    823984 8i0s:b (4.2) BS01 rna N/A GO:0000243 ... P62314 39068178
    823985 8i0s:c (4.2) BS01 rna N/A GO:0000245 ... P62316 39068178
    823986 8i0s:d (4.2) BS01 rna N/A GO:0000387 ... P62306 39068178
    823987 8i0s:e (4.2) BS01 rna N/A GO:0000245 ... P62304 39068178
    823988 8i0s:f (4.2) BS01 rna N/A GO:0000245 ... P62308 39068178
    823989 8i0s:g (4.2) BS01 rna N/A GO:0000243 ... P62318 39068178
    823990 8i0s:h (4.2) BS01 rna N/A GO:0000245 ... P62316 39068178
    823991 8i0s:i (4.2) BS01 rna N/A GO:0000387 ... P62306 39068178
    823992 8i0s:j (4.2) BS01 rna N/A GO:0000245 ... P62304 39068178
    823993 8i0s:k (4.2) BS01 rna N/A GO:0000245 ... P62308 39068178
    823994 8i0s:l (4.2) BS01 rna N/A GO:0000243 ... P62318 39068178
    823995 8i0s:m (4.2) BS01 rna N/A GO:0000387 ... P14678 39068178
    823996 8i0s:n (4.2) BS01 rna N/A GO:0000243 ... P62314 39068178
    823997 8i0s:p (4.2) BS01 rna N/A GO:0000398 ... P08579 39068178
    823998 8i0s:w (4.2) BS01 rna N/A GO:0000375 ... Q12874 39068178
    823999 8i0s:w (4.2) BS02 rna N/A GO:0000375 ... Q12874 39068178
    824000 8i0t:1 (3.0) BS01 rna N/A GO:0000245 ... O75533 39068178

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).