SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    824001 8i0t:1 (3.0) BS02 rna N/A GO:0000245 ... O75533 39068178
    824002 8i0t:2 (3.0) BS01 rna N/A GO:0000398 ... Q13435 39068178
    824003 8i0t:2 (3.0) BS02 rna N/A GO:0000398 ... Q13435 39068178
    824004 8i0t:7 (3.0) BS01 ZN N/A GO:0000398 ... Q7RTV0 39068178
    824005 8i0t:7 (3.0) BS02 ZN N/A GO:0000398 ... Q7RTV0 39068178
    824006 8i0t:7 (3.0) BS03 ZN N/A GO:0000398 ... Q7RTV0 39068178
    824007 8i0t:A (3.0) BS01 rna N/A GO:0000244 ... Q6P2Q9 39068178
    824008 8i0t:A (3.0) BS02 rna N/A GO:0000244 ... Q6P2Q9 39068178
    824009 8i0t:A (3.0) BS03 rna N/A GO:0000244 ... Q6P2Q9 39068178
    824010 8i0t:A (3.0) BS04 rna N/A GO:0000244 ... Q6P2Q9 39068178
    824011 8i0t:A (3.0) BS05 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    824012 8i0t:C (3.0) BS01 rna N/A GO:0000398 ... Q15029 39068178
    824013 8i0t:C (3.0) BS02 GTP N/A GO:0000398 ... Q15029 39068178
    824014 8i0t:J (3.0) BS01 rna N/A GO:0000245 ... Q9BZJ0 39068178
    824015 8i0t:K (3.0) BS01 rna N/A GO:0000398 ... O15541 39068178
    824016 8i0t:K (3.0) BS02 ZN N/A GO:0000398 ... O15541 39068178
    824017 8i0t:L (3.0) BS01 rna N/A GO:0000077 ... Q99459 39068178
    824018 8i0t:N (3.0) BS01 rna N/A GO:0000398 ... P41223 39068178
    824019 8i0t:N (3.0) BS02 ZN N/A GO:0000398 ... P41223 39068178
    824020 8i0t:N (3.0) BS03 ZN N/A GO:0000398 ... P41223 39068178
    824021 8i0t:O (3.0) BS01 rna N/A GO:0000398 ... Q9NW64 39068178
    824022 8i0t:O (3.0) BS02 rna N/A GO:0000398 ... Q9NW64 39068178
    824023 8i0t:P (3.0) BS01 rna N/A GO:0000398 ... Q9P013 39068178
    824024 8i0t:R (3.0) BS01 rna N/A GO:0000122 ... Q13573 39068178
    824025 8i0t:T (3.0) BS01 rna N/A GO:0000398 ... O43660 39068178
    824026 8i0t:U (3.0) BS01 rna N/A GO:0000398 ... Q9UQ35 39068178
    824027 8i0t:X (3.0) BS01 rna N/A GO:0000398 ... O60231 39068178
    824028 8i0t:Y (3.0) BS01 rna N/A GO:0000413 ... Q8WUA2 39068178
    824029 8i0t:a (3.0) BS01 rna N/A GO:0000387 ... P14678 39068178
    824030 8i0t:b (3.0) BS01 rna N/A GO:0000243 ... P62314 39068178
    824031 8i0t:d (3.0) BS01 rna N/A GO:0000387 ... P62306 39068178
    824032 8i0t:e (3.0) BS01 rna N/A GO:0000245 ... P62304 39068178
    824033 8i0t:g (3.0) BS01 rna N/A GO:0000243 ... P62318 39068178
    824034 8i0t:h (3.0) BS01 rna N/A GO:0000245 ... P62316 39068178
    824035 8i0t:i (3.0) BS01 rna N/A GO:0000387 ... P62306 39068178
    824036 8i0t:j (3.0) BS01 rna N/A GO:0000245 ... P62304 39068178
    824037 8i0t:k (3.0) BS01 rna N/A GO:0000245 ... P62308 39068178
    824038 8i0t:l (3.0) BS01 rna N/A GO:0000243 ... P62318 39068178
    824039 8i0t:m (3.0) BS01 rna N/A GO:0000387 ... P14678 39068178
    824040 8i0t:n (3.0) BS01 rna N/A GO:0000243 ... P62314 39068178
    824041 8i0t:p (3.0) BS01 rna N/A GO:0000398 ... P08579 39068178
    824042 8i0t:v (3.0) BS01 rna N/A GO:0000245 ... Q15428 39068178
    824043 8i0t:v (3.0) BS02 rna N/A GO:0000245 ... Q15428 39068178
    824044 8i0t:w (3.0) BS01 rna N/A GO:0000375 ... Q12874 39068178
    824045 8i0t:w (3.0) BS02 rna N/A GO:0000375 ... Q12874 39068178
    824046 8i0u:1 (3.3) BS01 rna N/A GO:0000245 ... O75533 39068178
    824047 8i0u:1 (3.3) BS02 rna N/A GO:0000245 ... O75533 39068178
    824048 8i0u:2 (3.3) BS01 rna N/A GO:0000398 ... Q13435 39068178
    824049 8i0u:2 (3.3) BS02 rna N/A GO:0000398 ... Q13435 39068178
    824050 8i0u:7 (3.3) BS01 ZN N/A GO:0000398 ... Q7RTV0 39068178
    824051 8i0u:7 (3.3) BS02 ZN N/A GO:0000398 ... Q7RTV0 39068178
    824052 8i0u:7 (3.3) BS03 ZN N/A GO:0000398 ... Q7RTV0 39068178
    824053 8i0u:A (3.3) BS01 rna N/A GO:0000244 ... Q6P2Q9 39068178
    824054 8i0u:A (3.3) BS02 rna N/A GO:0000244 ... Q6P2Q9 39068178
    824055 8i0u:A (3.3) BS03 rna N/A GO:0000244 ... Q6P2Q9 39068178
    824056 8i0u:A (3.3) BS04 rna N/A GO:0000244 ... Q6P2Q9 39068178
    824057 8i0u:A (3.3) BS05 peptide N/A GO:0000244 ... Q6P2Q9 39068178
    824058 8i0u:A (3.3) BS06 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    824059 8i0u:C (3.3) BS01 rna N/A GO:0000398 ... Q15029 39068178
    824060 8i0u:C (3.3) BS02 GTP N/A GO:0000398 ... Q15029 39068178
    824061 8i0u:J (3.3) BS01 rna N/A GO:0000245 ... Q9BZJ0 39068178
    824062 8i0u:L (3.3) BS01 rna N/A GO:0000077 ... Q99459 39068178
    824063 8i0u:L (3.3) BS02 rna N/A GO:0000077 ... Q99459 39068178
    824064 8i0u:M (3.3) BS01 rna N/A GO:0000398 ... O95926 39068178
    824065 8i0u:M (3.3) BS02 rna N/A GO:0000398 ... O95926 39068178
    824066 8i0u:N (3.3) BS01 rna N/A GO:0000398 ... P41223 39068178
    824067 8i0u:N (3.3) BS02 ZN N/A GO:0000398 ... P41223 39068178
    824068 8i0u:N (3.3) BS03 ZN N/A GO:0000398 ... P41223 39068178
    824069 8i0u:N (3.3) BS04 ZN N/A GO:0000398 ... P41223 39068178
    824070 8i0u:O (3.3) BS01 rna N/A GO:0000398 ... Q9NW64 39068178
    824071 8i0u:O (3.3) BS02 rna N/A GO:0000398 ... Q9NW64 39068178
    824072 8i0u:P (3.3) BS01 rna N/A GO:0000398 ... Q9P013 39068178
    824073 8i0u:R (3.3) BS01 rna N/A GO:0000122 ... Q13573 39068178
    824074 8i0u:R (3.3) BS02 rna N/A GO:0000122 ... Q13573 39068178
    824075 8i0u:U (3.3) BS01 rna N/A GO:0000398 ... Q9UQ35 39068178
    824076 8i0u:X (3.3) BS01 rna N/A GO:0000398 ... O60231 39068178
    824077 8i0u:Y (3.3) BS01 rna N/A GO:0000413 ... Q8WUA2 39068178
    824078 8i0u:b (3.3) BS01 rna N/A GO:0000243 ... P62314 39068178
    824079 8i0u:c (3.3) BS01 rna N/A GO:0000245 ... P62316 39068178
    824080 8i0u:d (3.3) BS01 rna N/A GO:0000387 ... P62306 39068178
    824081 8i0u:e (3.3) BS01 rna N/A GO:0000245 ... P62304 39068178
    824082 8i0u:f (3.3) BS01 rna N/A GO:0000245 ... P62308 39068178
    824083 8i0u:g (3.3) BS01 rna N/A GO:0000243 ... P62318 39068178
    824084 8i0u:h (3.3) BS01 rna N/A GO:0000245 ... P62316 39068178
    824085 8i0u:i (3.3) BS01 rna N/A GO:0000387 ... P62306 39068178
    824086 8i0u:j (3.3) BS01 rna N/A GO:0000245 ... P62304 39068178
    824087 8i0u:k (3.3) BS01 rna N/A GO:0000245 ... P62308 39068178
    824088 8i0u:l (3.3) BS01 rna N/A GO:0000243 ... P62318 39068178
    824089 8i0u:m (3.3) BS01 rna N/A GO:0000387 ... P14678 39068178
    824090 8i0u:n (3.3) BS01 rna N/A GO:0000243 ... P62314 39068178
    824091 8i0u:p (3.3) BS01 rna N/A GO:0000398 ... P08579 39068178
    824092 8i0u:w (3.3) BS01 rna N/A GO:0000375 ... Q12874 39068178
    824093 8i0u:w (3.3) BS02 rna N/A GO:0000375 ... Q12874 39068178
    824094 8i0v:2 (3.0) BS01 rna N/A GO:0000398 ... Q13435 39068178
    824095 8i0v:4 (3.0) BS01 rna N/A GO:0000375 ... Q15427 39068178
    824096 8i0v:7 (3.0) BS01 ZN N/A GO:0000398 ... Q7RTV0 39068178
    824097 8i0v:7 (3.0) BS02 ZN N/A GO:0000398 ... Q7RTV0 39068178
    824098 8i0v:7 (3.0) BS03 ZN N/A GO:0000398 ... Q7RTV0 39068178
    824099 8i0v:A (3.0) BS01 rna N/A GO:0000244 ... Q6P2Q9 39068178
    824100 8i0v:A (3.0) BS02 rna N/A GO:0000244 ... Q6P2Q9 39068178
    824101 8i0v:A (3.0) BS03 rna N/A GO:0000244 ... Q6P2Q9 39068178
    824102 8i0v:A (3.0) BS04 rna N/A GO:0000244 ... Q6P2Q9 39068178
    824103 8i0v:A (3.0) BS05 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    824104 8i0v:C (3.0) BS01 rna N/A GO:0000398 ... Q15029 39068178
    824105 8i0v:C (3.0) BS02 GTP N/A GO:0000398 ... Q15029 39068178
    824106 8i0v:J (3.0) BS01 rna N/A GO:0000245 ... Q9BZJ0 39068178
    824107 8i0v:L (3.0) BS01 rna N/A GO:0000077 ... Q99459 39068178
    824108 8i0v:L (3.0) BS02 rna N/A GO:0000077 ... Q99459 39068178
    824109 8i0v:M (3.0) BS01 rna N/A GO:0000398 ... O95926 39068178
    824110 8i0v:M (3.0) BS02 rna N/A GO:0000398 ... O95926 39068178
    824111 8i0v:N (3.0) BS01 rna N/A GO:0000398 ... P41223 39068178
    824112 8i0v:N (3.0) BS02 ZN N/A GO:0000398 ... P41223 39068178
    824113 8i0v:N (3.0) BS03 ZN N/A GO:0000398 ... P41223 39068178
    824114 8i0v:N (3.0) BS04 ZN N/A GO:0000398 ... P41223 39068178
    824115 8i0v:O (3.0) BS01 rna N/A GO:0000398 ... Q9NW64 39068178
    824116 8i0v:O (3.0) BS02 rna N/A GO:0000398 ... Q9NW64 39068178
    824117 8i0v:P (3.0) BS01 rna N/A GO:0000398 ... Q9P013 39068178
    824118 8i0v:R (3.0) BS01 rna N/A GO:0000122 ... Q13573 39068178
    824119 8i0v:R (3.0) BS02 rna N/A GO:0000122 ... Q13573 39068178
    824120 8i0v:U (3.0) BS01 rna N/A GO:0000398 ... Q9UQ35 39068178
    824121 8i0v:X (3.0) BS01 rna N/A GO:0000398 ... O60231 39068178
    824122 8i0v:Y (3.0) BS01 rna N/A GO:0000413 ... Q8WUA2 39068178
    824123 8i0v:a (3.0) BS01 rna N/A GO:0000387 ... P14678 39068178
    824124 8i0v:b (3.0) BS01 rna N/A GO:0000243 ... P62314 39068178
    824125 8i0v:c (3.0) BS01 rna N/A GO:0000245 ... P62316 39068178
    824126 8i0v:d (3.0) BS01 rna N/A GO:0000387 ... P62306 39068178
    824127 8i0v:e (3.0) BS01 rna N/A GO:0000245 ... P62304 39068178
    824128 8i0v:g (3.0) BS01 rna N/A GO:0000243 ... P62318 39068178
    824129 8i0v:h (3.0) BS01 rna N/A GO:0000245 ... P62316 39068178
    824130 8i0v:i (3.0) BS01 rna N/A GO:0000387 ... P62306 39068178
    824131 8i0v:j (3.0) BS01 rna N/A GO:0000245 ... P62304 39068178
    824132 8i0v:k (3.0) BS01 rna N/A GO:0000245 ... P62308 39068178
    824133 8i0v:l (3.0) BS01 rna N/A GO:0000243 ... P62318 39068178
    824134 8i0v:m (3.0) BS01 rna N/A GO:0000387 ... P14678 39068178
    824135 8i0v:n (3.0) BS01 rna N/A GO:0000243 ... P62314 39068178
    824136 8i0v:p (3.0) BS01 rna N/A GO:0000398 ... P08579 39068178
    824137 8i0w:1 (3.4) BS01 rna N/A GO:0005634 ... Q9NW82 39068178
    824138 8i0w:A (3.4) BS01 rna N/A GO:0000244 ... Q6P2Q9 39068178
    824139 8i0w:A (3.4) BS02 rna N/A GO:0000244 ... Q6P2Q9 39068178
    824140 8i0w:A (3.4) BS03 rna N/A GO:0000244 ... Q6P2Q9 39068178
    824141 8i0w:A (3.4) BS04 rna N/A GO:0000244 ... Q6P2Q9 39068178
    824142 8i0w:A (3.4) BS05 rna N/A GO:0000244 ... Q6P2Q9 39068178
    824143 8i0w:A (3.4) BS06 peptide N/A GO:0000244 ... Q6P2Q9 39068178
    824144 8i0w:A (3.4) BS07 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    824145 8i0w:C (3.4) BS01 rna N/A GO:0000398 ... Q15029 39068178
    824146 8i0w:C (3.4) BS02 GTP N/A GO:0000398 ... Q15029 39068178
    824147 8i0w:J (3.4) BS01 rna N/A GO:0000245 ... Q9BZJ0 39068178
    824148 8i0w:L (3.4) BS01 rna N/A GO:0000077 ... Q99459 39068178
    824149 8i0w:L (3.4) BS02 rna N/A GO:0000077 ... Q99459 39068178
    824150 8i0w:M (3.4) BS01 rna N/A GO:0000398 ... O95926 39068178
    824151 8i0w:M (3.4) BS02 rna N/A GO:0000398 ... O95926 39068178
    824152 8i0w:N (3.4) BS01 rna N/A GO:0000398 ... P41223 39068178
    824153 8i0w:N (3.4) BS02 ZN N/A GO:0000398 ... P41223 39068178
    824154 8i0w:N (3.4) BS03 ZN N/A GO:0000398 ... P41223 39068178
    824155 8i0w:N (3.4) BS04 ZN N/A GO:0000398 ... P41223 39068178
    824156 8i0w:O (3.4) BS01 rna N/A GO:0000398 ... Q9NW64 39068178
    824157 8i0w:O (3.4) BS02 rna N/A GO:0000398 ... Q9NW64 39068178
    824158 8i0w:O (3.4) BS03 ZN N/A GO:0000398 ... Q9NW64 39068178
    824159 8i0w:O (3.4) BS04 ZN N/A GO:0000398 ... Q9NW64 39068178
    824160 8i0w:O (3.4) BS05 ZN N/A GO:0000398 ... Q9NW64 39068178
    824161 8i0w:P (3.4) BS01 rna N/A GO:0000398 ... Q9P013 39068178
    824162 8i0w:R (3.4) BS01 rna N/A GO:0000122 ... Q13573 39068178
    824163 8i0w:T (3.4) BS01 rna N/A GO:0000398 ... O43660 39068178
    824164 8i0w:U (3.4) BS01 rna N/A GO:0000398 ... Q9UQ35 39068178
    824165 8i0w:W (3.4) BS01 rna N/A GO:0000398 ... O60508 39068178
    824166 8i0w:W (3.4) BS02 rna N/A GO:0000398 ... O60508 39068178
    824167 8i0w:X (3.4) BS01 rna N/A GO:0000398 ... Q9NXE8 39068178
    824168 8i0w:X (3.4) BS02 rna N/A GO:0000398 ... Q9NXE8 39068178
    824169 8i0w:Y (3.4) BS01 rna N/A GO:0000349 ... Q9BW85 39068178
    824170 8i0w:Y (3.4) BS02 rna N/A GO:0000349 ... Q9BW85 39068178
    824171 8i0w:Y (3.4) BS03 rna N/A GO:0000349 ... Q9BW85 39068178
    824172 8i0w:Y (3.4) BS04 ZN N/A GO:0000349 ... Q9BW85 39068178
    824173 8i0w:a (3.4) BS01 rna N/A GO:0000387 ... P14678 39068178
    824174 8i0w:b (3.4) BS01 rna N/A GO:0000243 ... P62314 39068178
    824175 8i0w:c (3.4) BS01 rna N/A GO:0000245 ... P62316 39068178
    824176 8i0w:d (3.4) BS01 rna N/A GO:0000387 ... P62306 39068178
    824177 8i0w:e (3.4) BS01 rna N/A GO:0000245 ... P62304 39068178
    824178 8i0w:g (3.4) BS01 rna N/A GO:0000243 ... P62318 39068178
    824179 8i0w:h (3.4) BS01 rna N/A GO:0000243 ... P62318 39068178
    824180 8i0w:i (3.4) BS01 rna N/A GO:0000387 ... P14678 39068178
    824181 8i0w:j (3.4) BS01 rna N/A GO:0000243 ... P62314 39068178
    824182 8i0w:k (3.4) BS01 rna N/A GO:0000245 ... P62316 39068178
    824183 8i0w:l (3.4) BS01 rna N/A GO:0000245 ... P62304 39068178
    824184 8i0w:m (3.4) BS01 rna N/A GO:0000387 ... P62306 39068178
    824185 8i0w:n (3.4) BS01 rna N/A GO:0000245 ... P62308 39068178
    824186 8i0w:p (3.4) BS01 rna N/A GO:0000398 ... P08579 39068178
    824187 8i0w:u (3.4) BS01 rna N/A GO:0000184 ... P38919 39068178
    824188 8i0w:u (3.4) BS02 peptide N/A GO:0000184 ... P38919 39068178
    824189 8i0w:v (3.4) BS01 peptide N/A GO:0000184 ... P61326 39068178
    824190 8i0w:z (3.4) BS01 rna N/A GO:0000350 ... Q9ULR0 39068178
    824191 8i0w:z (3.4) BS02 rna N/A GO:0000350 ... Q9ULR0 39068178
    824192 8i0y:A (1.792) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    824193 8i0y:A (1.792) BS02 O76 1.13.11.27 GO:0003868 ... P93836 N/A
    824194 8i0z:A (4.33) BS01 peptide ? GO:0000822 ... P32120 37209686
    824195 8i0z:B (4.33) BS01 peptide ? GO:0000822 ... P32120 37209686
    824196 8i0z:C (4.33) BS01 peptide ? GO:0000822 ... P32120 37209686
    824197 8i0z:E (4.33) BS01 peptide N/A N/A N/A 37209686
    824198 8i0z:L (4.33) BS01 peptide N/A N/A N/A 37209686
    824199 8i0z:N (4.33) BS01 peptide N/A N/A N/A 37209686
    824200 8i10:A (3.96) BS01 peptide ? GO:0000822 ... P32120 37209686

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).