SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    824401 8i3n:D (1.73) BS01 ZN 3.5.4.1 GO:0003824 ... Q12178 N/A
    824402 8i3o:A (2.0) BS01 MN 3.5.4.1 GO:0003824 ... Q12178 N/A
    824403 8i3o:B (2.0) BS01 MN 3.5.4.1 GO:0003824 ... Q12178 N/A
    824404 8i3o:C (2.0) BS01 MN 3.5.4.1 GO:0003824 ... Q12178 N/A
    824405 8i3o:D (2.0) BS01 MN 3.5.4.1 GO:0003824 ... Q12178 N/A
    824406 8i3p:A (1.3) BS01 OS0 3.5.4.1 GO:0003824 ... Q12178 N/A
    824407 8i3p:A (1.3) BS02 ZN 3.5.4.1 GO:0003824 ... Q12178 N/A
    824408 8i3p:B (1.3) BS01 OS0 3.5.4.1 GO:0003824 ... Q12178 N/A
    824409 8i3p:B (1.3) BS02 ZN 3.5.4.1 GO:0003824 ... Q12178 N/A
    824410 8i3q:A (3.1) BS01 rna ? GO:0003677 ... A0A7C2YU39 37729124
    824411 8i3q:A (3.1) BS02 ZN ? GO:0003677 ... A0A7C2YU39 37729124
    824412 8i3v:A (2.85) BS01 68P N/A GO:0003779 ... P23975 39048818
    824413 8i3x:A (1.78) BS01 ZN ? GO:0004842 ... B8AY66 N/A
    824414 8i3x:A (1.78) BS02 ZN ? GO:0004842 ... B8AY66 N/A
    824415 8i3x:B (1.78) BS01 ZN ? GO:0004842 ... B8AY66 N/A
    824416 8i3x:B (1.78) BS02 ZN ? GO:0004842 ... B8AY66 N/A
    824417 8i3y:A (2.4) BS01 SCA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    824418 8i3y:A (2.4) BS02 CA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    824419 8i3y:B (2.4) BS01 CA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    824420 8i3y:C (2.4) BS01 CA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    824421 8i3y:D (2.4) BS01 CA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    824422 8i40:A (2.79) BS01 COA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    824423 8i40:C (2.79) BS01 COA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    824424 8i40:D (2.79) BS01 CA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    824425 8i49:A (2.41) BS01 ATP ? GO:0016877 ... Q00IB3 39794554
    824426 8i49:B (2.41) BS01 ATP ? GO:0016877 ... Q00IB3 39794554
    824427 8i49:C (2.41) BS01 ATP ? GO:0016877 ... Q00IB3 39794554
    824428 8i49:D (2.41) BS01 ATP ? GO:0016877 ... Q00IB3 39794554
    824429 8i49:E (2.41) BS01 ATP ? GO:0016877 ... Q00IB3 39794554
    824430 8i49:F (2.41) BS01 ATP ? GO:0016877 ... Q00IB3 39794554
    824431 8i4a:A (3.4) BS01 H9F 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0001409 ... O15439 N/A
    824432 8i4c:A (3.08) BS01 PUC 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0001409 ... O15439 N/A
    824433 8i4d:A (1.06) BS01 MAN 4.2.2.- GO:0046872 ... A0A8J0PCK3 38382672
    824434 8i4d:A (1.06) BS02 MAN 4.2.2.- GO:0046872 ... A0A8J0PCK3 38382672
    824435 8i4d:A (1.06) BS03 RAM 4.2.2.- GO:0046872 ... A0A8J0PCK3 38382672
    824436 8i4d:A (1.06) BS04 ACT 4.2.2.- GO:0046872 ... A0A8J0PCK3 38382672
    824437 8i4d:A (1.06) BS05 CA 4.2.2.- GO:0046872 ... A0A8J0PCK3 38382672
    824438 8i4i:A (2.2) BS01 TRP 6.1.1.2 GO:0000166 ... P00954 37070195
    824439 8i4i:B (2.2) BS01 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    824440 8i4o:A (3.1) BS01 peptide N/A GO:0006091 ... N/A 38034956
    824441 8i4o:C (3.1) BS01 peptide N/A GO:0006091 ... N/A 38034956
    824442 8i4o:E (3.1) BS01 peptide N/A GO:0006091 ... N/A 38034956
    824443 8i4o:G (3.1) BS01 peptide N/A GO:0006091 ... N/A 38034956
    824444 8i4o:I (3.1) BS01 peptide N/A GO:0006091 ... N/A 38034956
    824445 8i4o:K (3.1) BS01 peptide N/A GO:0006091 ... N/A 38034956
    824446 8i4p:A (1.9) BS01 FAD 6.2.1.5 GO:0003995 ... A0A4D5XMK4 N/A
    824447 8i4q:A (1.9) BS01 NAP 1.1.1.44 GO:0000166 ... Q8NQI2 37417004
    824448 8i4q:B (1.9) BS01 NAP 1.1.1.44 GO:0000166 ... Q8NQI2 37417004
    824449 8i4r:A (2.51) BS01 FAD 6.2.1.5 GO:0003995 ... A0A4D5XMK4 N/A
    824450 8i4r:A (2.51) BS02 ACO 6.2.1.5 GO:0003995 ... A0A4D5XMK4 N/A
    824451 8i4s:A (2.2) BS01 OU3 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37257212
    824452 8i4y:A (3.84) BS01 ONF 2.3.1.41 GO:0004312 ... A0A2N9BJK0 36899013
    824453 8i4y:B (3.84) BS01 ONF 2.3.1.41 GO:0004312 ... A0A2N9BJK0 36899013
    824454 8i4z:A (3.97) BS01 ONF 2.3.1.41 GO:0004312 ... A0A2N9BJK0 36899013
    824455 8i51:A (2.76) BS01 AMP ? GO:0016877 ... Q00IB3 39794554
    824456 8i51:A (2.76) BS02 OP3 ? GO:0016877 ... Q00IB3 39794554
    824457 8i51:B (2.76) BS01 AMP ? GO:0016877 ... Q00IB3 39794554
    824458 8i51:B (2.76) BS02 OP3 ? GO:0016877 ... Q00IB3 39794554
    824459 8i51:C (2.76) BS01 AMP ? GO:0016877 ... Q00IB3 39794554
    824460 8i51:C (2.76) BS02 OP3 ? GO:0016877 ... Q00IB3 39794554
    824461 8i51:D (2.76) BS01 AMP ? GO:0016877 ... Q00IB3 39794554
    824462 8i51:D (2.76) BS02 OP3 ? GO:0016877 ... Q00IB3 39794554
    824463 8i51:E (2.76) BS01 AMP ? GO:0016877 ... Q00IB3 39794554
    824464 8i51:E (2.76) BS02 OP3 ? GO:0016877 ... Q00IB3 39794554
    824465 8i51:F (2.76) BS01 AMP ? GO:0016877 ... Q00IB3 39794554
    824466 8i51:F (2.76) BS02 OP3 ? GO:0016877 ... Q00IB3 39794554
    824467 8i52:A (1.58) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    824468 8i52:A (1.58) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    824469 8i52:D (1.58) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    824470 8i52:D (1.58) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    824471 8i52:D (1.58) BS03 OR6 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    824472 8i54:A (3.95) BS01 rna N/A N/A N/A 36917574
    824473 8i54:A (3.95) BS02 dna N/A N/A N/A 36917574
    824474 8i54:A (3.95) BS03 dna N/A N/A N/A 36917574
    824475 8i57:A (2.81) BS01 UP3 4.99.1.11
    4.99.1.3
    GO:0009236 ... Q58380 39548701
    824476 8i57:B (2.81) BS01 UP3 4.99.1.11
    4.99.1.3
    GO:0009236 ... Q58380 39548701
    824477 8i58:A (3.09) BS01 UPI 4.99.1.11
    4.99.1.3
    GO:0009236 ... Q58380 39548701
    824478 8i58:B (3.09) BS01 UPI 4.99.1.11
    4.99.1.3
    GO:0009236 ... Q58380 39548701
    824479 8i5b:A (2.7) BS01 P5S ? GO:0001518 ... Q15858 37270609
    824480 8i5b:A (2.7) BS02 Y01 ? GO:0001518 ... Q15858 37270609
    824481 8i5b:A (2.7) BS03 Y01 ? GO:0001518 ... Q15858 37270609
    824482 8i5b:A (2.7) BS04 Y01 ? GO:0001518 ... Q15858 37270609
    824483 8i5b:A (2.7) BS05 Y01 ? GO:0001518 ... Q15858 37270609
    824484 8i5b:A (2.7) BS06 Y01 ? GO:0001518 ... Q15858 37270609
    824485 8i5b:A (2.7) BS07 LPE ? GO:0001518 ... Q15858 37270609
    824486 8i5b:A (2.7) BS08 LPE ? GO:0001518 ... Q15858 37270609
    824487 8i5b:A (2.7) BS09 LPE ? GO:0001518 ... Q15858 37270609
    824488 8i5b:A (2.7) BS10 LPE ? GO:0001518 ... Q15858 37270609
    824489 8i5b:A (2.7) BS11 LPE ? GO:0001518 ... Q15858 37270609
    824490 8i5b:A (2.7) BS12 LPE ? GO:0001518 ... Q15858 37270609
    824491 8i5b:A (2.7) BS13 OJ0 ? GO:0001518 ... Q15858 37270609
    824492 8i5c:A (3.34) BS01 peptide ? N/A U5YJJ6 N/A
    824493 8i5c:E (3.34) BS01 peptide N/A N/A N/A N/A
    824494 8i5c:F (3.34) BS01 peptide ? N/A U5YJJ6 N/A
    824495 8i5c:K (3.34) BS01 peptide ? N/A U5YJJ6 N/A
    824496 8i5c:O (3.34) BS01 peptide N/A N/A N/A N/A
    824497 8i5c:P (3.34) BS01 peptide ? N/A U5YJJ6 N/A
    824498 8i5c:U (3.34) BS01 peptide ? N/A U5YJJ6 N/A
    824499 8i5c:Y (3.34) BS01 peptide N/A N/A N/A N/A
    824500 8i5c:Z (3.34) BS01 peptide ? N/A U5YJJ6 N/A
    824501 8i5c:d (3.34) BS01 peptide N/A N/A N/A N/A
    824502 8i5c:e (3.34) BS01 peptide ? N/A U5YJJ6 N/A
    824503 8i5c:i (3.34) BS01 peptide N/A N/A N/A N/A
    824504 8i5c:j (3.34) BS01 peptide ? N/A U5YJJ6 N/A
    824505 8i5c:n (3.34) BS01 peptide N/A N/A N/A N/A
    824506 8i5c:o (3.34) BS01 peptide ? N/A U5YJJ6 N/A
    824507 8i5c:s (3.34) BS01 peptide N/A N/A N/A N/A
    824508 8i5c:t (3.34) BS01 peptide ? N/A U5YJJ6 N/A
    824509 8i5c:x (3.34) BS01 peptide N/A N/A N/A N/A
    824510 8i5d:H (3.3) BS01 peptide ? N/A U5YJJ6 N/A
    824511 8i5e:H (2.2) BS01 peptide ? N/A U5YJJ6 N/A
    824512 8i5g:A (2.7) BS01 Y01 ? GO:0001518 ... Q15858 37270609
    824513 8i5g:A (2.7) BS02 9Z9 ? GO:0001518 ... Q15858 37270609
    824514 8i5g:A (2.7) BS03 T70 ? GO:0001518 ... Q15858 37270609
    824515 8i5g:A (2.7) BS04 NA ? GO:0001518 ... Q15858 37270609
    824516 8i5g:A (2.7) BS05 LPE ? GO:0001518 ... Q15858 37270609
    824517 8i5g:A (2.7) BS06 LPE ? GO:0001518 ... Q15858 37270609
    824518 8i5g:A (2.7) BS07 LPE ? GO:0001518 ... Q15858 37270609
    824519 8i5g:A (2.7) BS08 LPE ? GO:0001518 ... Q15858 37270609
    824520 8i5g:A (2.7) BS09 LPE ? GO:0001518 ... Q15858 37270609
    824521 8i5g:A (2.7) BS10 LPE ? GO:0001518 ... Q15858 37270609
    824522 8i5g:A (2.7) BS11 LPE ? GO:0001518 ... Q15858 37270609
    824523 8i5g:B (2.7) BS01 LPE ? GO:0001518 ... Q07699 37270609
    824524 8i5j:A (1.602) BS01 MG ? GO:0030288 ... A0A085SLP2 37996461
    824525 8i5j:B (1.602) BS01 MG ? GO:0030288 ... A0A085SLP2 37996461
    824526 8i5k:A (1.219) BS01 MG ? GO:0030288 ... A0A085SLP2 37996461
    824527 8i5m:A (2.85) BS01 PIO ? GO:0005242 ... P49655 38355723
    824528 8i5m:B (2.85) BS01 PIO ? GO:0005242 ... P49655 38355723
    824529 8i5m:C (2.85) BS01 PIO ? GO:0005242 ... P49655 38355723
    824530 8i5m:D (2.85) BS01 PIO ? GO:0005242 ... P49655 38355723
    824531 8i5n:A (2.85) BS01 PIO ? GO:0005242 ... P49655 38355723
    824532 8i5n:B (2.85) BS01 PIO ? GO:0005242 ... P49655 38355723
    824533 8i5n:C (2.85) BS01 PIO ? GO:0005242 ... P49655 38355723
    824534 8i5n:D (2.85) BS01 PIO ? GO:0005242 ... P49655 38355723
    824535 8i5o:A (2.3) BS01 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824536 8i5p:A (2.35) BS01 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824537 8i5p:A (2.35) BS02 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824538 8i5p:A (2.35) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824539 8i5p:B (2.35) BS01 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824540 8i5p:B (2.35) BS02 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824541 8i5p:B (2.35) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824542 8i5q:A (2.2) BS01 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824543 8i5q:A (2.2) BS02 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824544 8i5q:A (2.2) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824545 8i5q:B (2.2) BS01 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824546 8i5q:B (2.2) BS02 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824547 8i5q:B (2.2) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824548 8i5r:A (1.65) BS01 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824549 8i5s:A (1.45) BS01 G2F 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824550 8i5s:A (1.45) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824551 8i5s:A (1.45) BS03 NFG 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824552 8i5s:A (1.45) BS04 NFG 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824553 8i5t:A (1.5) BS01 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824554 8i5t:A (1.5) BS02 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824555 8i5t:A (1.5) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824556 8i5u:A (1.4) BS01 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824557 8i5u:A (1.4) BS02 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824558 8i5u:A (1.4) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    824559 8i5x:A (2.9) BS01 P5S ? GO:0001518 ... Q15858 37270609
    824560 8i5x:A (2.9) BS02 Y01 ? GO:0001518 ... Q15858 37270609
    824561 8i5x:A (2.9) BS03 Y01 ? GO:0001518 ... Q15858 37270609
    824562 8i5x:A (2.9) BS04 Y01 ? GO:0001518 ... Q15858 37270609
    824563 8i5x:A (2.9) BS05 9Z9 ? GO:0001518 ... Q15858 37270609
    824564 8i5x:A (2.9) BS06 T7F ? GO:0001518 ... Q15858 37270609
    824565 8i5x:A (2.9) BS07 LPE ? GO:0001518 ... Q15858 37270609
    824566 8i5x:A (2.9) BS08 LPE ? GO:0001518 ... Q15858 37270609
    824567 8i5x:A (2.9) BS09 LPE ? GO:0001518 ... Q15858 37270609
    824568 8i5x:A (2.9) BS10 LPE ? GO:0001518 ... Q15858 37270609
    824569 8i5x:A (2.9) BS11 LPE ? GO:0001518 ... Q15858 37270609
    824570 8i5x:A (2.9) BS12 LPE ? GO:0001518 ... Q15858 37270609
    824571 8i5x:A (2.9) BS13 LPE ? GO:0001518 ... Q15858 37270609
    824572 8i5x:A (2.9) BS14 LPE ? GO:0001518 ... Q15858 37270609
    824573 8i5x:A (2.9) BS15 LPE ? GO:0001518 ... Q15858 37270609
    824574 8i5x:A (2.9) BS16 Y01 ? GO:0001518 ... Q15858 37270609
    824575 8i5x:A (2.9) BS17 LPE ? GO:0001518 ... Q15858 37270609
    824576 8i5x:B (2.9) BS01 LPE ? GO:0001518 ... Q07699 37270609
    824577 8i5y:A (2.6) BS01 P5S ? GO:0001518 ... Q15858 37270609
    824578 8i5y:A (2.6) BS02 Y01 ? GO:0001518 ... Q15858 37270609
    824579 8i5y:A (2.6) BS03 Y01 ? GO:0001518 ... Q15858 37270609
    824580 8i5y:A (2.6) BS04 9Z9 ? GO:0001518 ... Q15858 37270609
    824581 8i5y:A (2.6) BS05 Y01 ? GO:0001518 ... Q15858 37270609
    824582 8i5y:A (2.6) BS06 TB4 ? GO:0001518 ... Q15858 37270609
    824583 8i5y:A (2.6) BS07 NA ? GO:0001518 ... Q15858 37270609
    824584 8i5y:A (2.6) BS08 LPE ? GO:0001518 ... Q15858 37270609
    824585 8i5y:A (2.6) BS09 1PW ? GO:0001518 ... Q15858 37270609
    824586 8i5y:A (2.6) BS10 LPE ? GO:0001518 ... Q15858 37270609
    824587 8i5y:A (2.6) BS11 LPE ? GO:0001518 ... Q15858 37270609
    824588 8i5y:A (2.6) BS12 LPE ? GO:0001518 ... Q15858 37270609
    824589 8i5y:A (2.6) BS13 LPE ? GO:0001518 ... Q15858 37270609
    824590 8i5y:A (2.6) BS14 LPE ? GO:0001518 ... Q15858 37270609
    824591 8i5y:A (2.6) BS15 LPE ? GO:0001518 ... Q15858 37270609
    824592 8i5y:A (2.6) BS16 LPE ? GO:0001518 ... Q15858 37270609
    824593 8i5y:A (2.6) BS17 LPE ? GO:0001518 ... Q15858 37270609
    824594 8i5y:A (2.6) BS18 Y01 ? GO:0001518 ... Q15858 37270609
    824595 8i5y:A (2.6) BS19 LPE ? GO:0001518 ... Q15858 37270609
    824596 8i5y:B (2.6) BS01 LPE ? GO:0001518 ... Q07699 37270609
    824597 8i5y:B (2.6) BS02 LPE ? GO:0001518 ... Q07699 37270609
    824598 8i60:C (2.3) BS01 peptide ? GO:0006355 ... O95619 37311463
    824599 8i60:D (2.3) BS01 peptide ? GO:0006355 ... O95619 37311463
    824600 8i61:A (1.24) BS01 BR8 3.2.2.27 GO:0004844 ... P9WFQ9 37399710

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).