SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    824801 8hjv:O (3.1) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    824802 8hjv:P (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    824803 8hjv:P (3.1) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    824804 8hjv:Q (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    824805 8hjv:Q (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    824806 8hjv:Q (3.1) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    824807 8hjv:R (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    824808 8hjv:R (3.1) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    824809 8hjv:S (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    824810 8hjv:S (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    824811 8hjv:S (3.1) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    824812 8hjv:T (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    824813 8hjv:T (3.1) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    824814 8hjv:U (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    824815 8hjv:U (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    824816 8hjv:V (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    824817 8hjv:V (3.1) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    824818 8hjv:V (3.1) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    824819 8hjv:W (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    824820 8hjv:W (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    824821 8hjv:W (3.1) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    824822 8hjv:Y (3.1) BS01 MQE N/A N/A N/A 37737710
    824823 8hjx:A (1.15) BS01 CU ? N/A Q9X1H0 37035687
    824824 8hjx:B (1.15) BS01 CU ? N/A Q9X1H0 37035687
    824825 8hjy:A (1.18) BS01 CU ? N/A Q9X1H0 37035687
    824826 8hjy:B (1.18) BS01 CU ? N/A Q9X1H0 37035687
    824827 8hjz:A (1.22) BS01 CU ? N/A Q9X1H0 37035687
    824828 8hjz:B (1.22) BS01 CU ? N/A Q9X1H0 37035687
    824829 8hk0:A (2.29) BS01 FAD ? GO:0005886 ... A0A1W5T3Z2 37043819
    824830 8hk0:B (2.29) BS01 FAD ? GO:0005886 ... A0A1W5T3Z2 37043819
    824831 8hk0:C (2.29) BS01 FAD ? GO:0003995 ... A0A1W5T2G8 37043819
    824832 8hk0:D (2.29) BS01 FAD ? GO:0003995 ... A0A1W5T2G8 37043819
    824833 8hk1:1 (2.7) BS01 9B0 ? GO:0000245 ... O75533 36797247
    824834 8hk1:2 (2.7) BS01 rna ? GO:0000387 ... Q13435 36797247
    824835 8hk1:6 (2.7) BS01 ZN ? GO:0000387 ... Q7RTV0 36797247
    824836 8hk1:6 (2.7) BS02 ZN ? GO:0000387 ... Q7RTV0 36797247
    824837 8hk1:6 (2.7) BS03 ZN ? GO:0000387 ... Q7RTV0 36797247
    824838 8hk1:C (2.7) BS01 rna ? GO:0000375 ... Q12874 36797247
    824839 8hk1:C (2.7) BS02 ZN ? GO:0000375 ... Q12874 36797247
    824840 8hk1:D (2.7) BS01 rna ? GO:0000398 ... O43719 36797247
    824841 8hk1:G (2.7) BS01 rna ? GO:0000387 ... P08579 36797247
    824842 8hk1:a (2.7) BS01 rna ? GO:0000244 ... P62316 36797247
    824843 8hk1:d (2.7) BS01 rna ? GO:0000244 ... P62308 36797247
    824844 8hk1:e (2.7) BS01 rna ? GO:0000243 ... P62318 36797247
    824845 8hk2:A (2.9) BS01 CLR ? GO:0002430 ... Q16581 37169960
    824846 8hk2:A (2.9) BS02 CLR ? GO:0002430 ... Q16581 37169960
    824847 8hk6:A (2.64) BS01 ZN ? GO:0006813 ... Q5JUK3 37494189
    824848 8hk6:B (2.64) BS01 ZN ? GO:0006813 ... Q5JUK3 37494189
    824849 8hk6:C (2.64) BS01 ZN ? GO:0006813 ... Q5JUK3 37494189
    824850 8hk6:D (2.64) BS01 ZN ? GO:0006813 ... Q5JUK3 37494189
    824851 8hk7:A (3.0) BS01 AQV ? GO:0005509 ... Q13563 38483987
    824852 8hk7:B (3.0) BS01 AQV ? GO:0005509 ... Q13563 38483987
    824853 8hk7:C (3.0) BS01 AQV ? GO:0005509 ... Q13563 38483987
    824854 8hk7:D (3.0) BS01 AQV ? GO:0005509 ... Q13563 38483987
    824855 8hka:A (1.02) BS01 UB7 ? N/A A0A0K8P8D2 37295700
    824856 8hkb:A (1.4) BS01 UB7 ? N/A A0A0K8P8D2 37295700
    824857 8hkc:E (2.49) BS01 dna ? GO:0001000 ... P0AGB3 37238608
    824858 8hkc:E (2.49) BS02 dna ? GO:0001000 ... P0AGB3 37238608
    824859 8hkc:F (2.49) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 37238608
    824860 8hkc:F (2.49) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 37238608
    824861 8hkc:F (2.49) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 37238608
    824862 8hkc:F (2.49) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 37238608
    824863 8hkc:F (2.49) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 37238608
    824864 8hkd:A (2.35) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 N/A
    824865 8hkd:B (2.35) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 N/A
    824866 8hke:A (3.71) BS01 rna ? GO:0016020 ... Q9GZC8 38664565
    824867 8hke:A (3.71) BS02 rna ? GO:0016020 ... Q9GZC8 38664565
    824868 8hke:A (3.71) BS03 ZN ? GO:0016020 ... Q9GZC8 38664565
    824869 8hke:B (3.71) BS01 ZN ? GO:0016020 ... Q9GZC8 38664565
    824870 8hkf:A (2.66) BS01 ZN ? GO:0006813 ... Q5JUK3 37494189
    824871 8hkf:B (2.66) BS01 ZN ? GO:0006813 ... Q5JUK3 37494189
    824872 8hkf:C (2.66) BS01 ZN ? GO:0006813 ... Q5JUK3 37494189
    824873 8hkf:D (2.66) BS01 ZN ? GO:0006813 ... Q5JUK3 37494189
    824874 8hkh:A (2.7) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI1 38110403
    824875 8hkh:B (2.7) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI1 38110403
    824876 8hki:G (3.1) BS01 ADP ? GO:0002199 ... P49368 N/A
    824877 8hki:Q (3.1) BS01 ADP ? GO:0002199 ... P50990 N/A
    824878 8hki:Z (3.1) BS01 ADP ? GO:0003723 ... P40227 N/A
    824879 8hki:g (3.1) BS01 ADP ? GO:0002199 ... P49368 N/A
    824880 8hki:q (3.1) BS01 ADP ? GO:0002199 ... P50990 N/A
    824881 8hki:z (3.1) BS01 ADP ? GO:0003723 ... P40227 N/A
    824882 8hkj:A (2.8) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... Q81BF4 37167731
    824883 8hkj:B (2.8) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... Q81BF4 37167731
    824884 8hkj:C (2.8) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... Q81BF4 37167731
    824885 8hkj:D (2.8) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... Q81BF4 37167731
    824886 8hkj:E (2.8) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... Q81BF4 37167731
    824887 8hkj:F (2.8) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... Q81BF4 37167731
    824888 8hkj:G (2.8) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... Q81BF4 37167731
    824889 8hkj:H (2.8) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... Q81BF4 37167731
    824890 8hkj:I (2.8) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... Q81BF4 37167731
    824891 8hkj:J (2.8) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... Q81BF4 37167731
    824892 8hkj:K (2.8) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... Q81BF4 37167731
    824893 8hkj:L (2.8) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... Q81BF4 37167731
    824894 8hkk:A (2.84) BS01 ZN ? GO:0006813 ... Q5JUK3 37494189
    824895 8hkk:A (2.84) BS02 NA ? GO:0006813 ... Q5JUK3 37494189
    824896 8hkk:B (2.84) BS01 ZN ? GO:0006813 ... Q5JUK3 37494189
    824897 8hkk:C (2.84) BS01 ZN ? GO:0006813 ... Q5JUK3 37494189
    824898 8hkk:D (2.84) BS01 ZN ? GO:0006813 ... Q5JUK3 37494189
    824899 8hkm:A (2.95) BS01 ZN ? GO:0006813 ... Q5JUK3 37494189
    824900 8hkm:A (2.95) BS02 6OU ? GO:0006813 ... Q5JUK3 37494189
    824901 8hkm:B (2.95) BS01 6OU ? GO:0006813 ... Q5JUK3 37494189
    824902 8hkm:B (2.95) BS02 ZN ? GO:0006813 ... Q5JUK3 37494189
    824903 8hkm:C (2.95) BS01 6OU ? GO:0006813 ... Q5JUK3 37494189
    824904 8hkm:C (2.95) BS02 ZN ? GO:0006813 ... Q5JUK3 37494189
    824905 8hkm:D (2.95) BS01 6OU ? GO:0006813 ... Q5JUK3 37494189
    824906 8hkm:D (2.95) BS02 ZN ? GO:0006813 ... Q5JUK3 37494189
    824907 8hkn:A (2.5) BS01 25I 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9UGN5 40228437
    824908 8hkn:B (2.5) BS01 25I 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9UGN5 40228437
    824909 8hko:A (2.1) BS01 RPB 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9UGN5 40228437
    824910 8hko:B (2.1) BS01 RPB 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9UGN5 40228437
    824911 8hkp:A (3.6) BS01 AV0 ? GO:0005243 ... Q9UKL4 36906653
    824912 8hkp:B (3.6) BS01 AV0 ? GO:0005243 ... Q9UKL4 36906653
    824913 8hkp:C (3.6) BS01 AV0 ? GO:0005243 ... Q9UKL4 36906653
    824914 8hkp:D (3.6) BS01 AV0 ? GO:0005243 ... Q9UKL4 36906653
    824915 8hkp:E (3.6) BS01 AV0 ? GO:0005243 ... Q9UKL4 36906653
    824916 8hkp:F (3.6) BS01 AV0 ? GO:0005243 ... Q9UKL4 36906653
    824917 8hkq:A (2.9) BS01 LQ9 ? GO:0006813 ... Q5JUK3 37494189
    824918 8hkq:A (2.9) BS02 ZN ? GO:0006813 ... Q5JUK3 37494189
    824919 8hkq:A (2.9) BS03 NA ? GO:0006813 ... Q5JUK3 37494189
    824920 8hkq:B (2.9) BS01 LQ9 ? GO:0006813 ... Q5JUK3 37494189
    824921 8hkq:B (2.9) BS02 ZN ? GO:0006813 ... Q5JUK3 37494189
    824922 8hkq:C (2.9) BS01 LQ9 ? GO:0006813 ... Q5JUK3 37494189
    824923 8hkq:C (2.9) BS02 ZN ? GO:0006813 ... Q5JUK3 37494189
    824924 8hkq:D (2.9) BS01 LQ9 ? GO:0006813 ... Q5JUK3 37494189
    824925 8hkq:D (2.9) BS02 ZN ? GO:0006813 ... Q5JUK3 37494189
    824926 8hkr:A (2.4) BS01 SAH ? GO:0005576 ... P9WLL9 38129415
    824927 8hkr:B (2.4) BS01 SAH ? GO:0005576 ... P9WLL9 38129415
    824928 8hks:A (2.8) BS01 DS9 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9UGN5 40228437
    824929 8hks:B (2.8) BS01 DS9 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9UGN5 40228437
    824930 8hks:C (2.8) BS01 DS9 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9UGN5 40228437
    824931 8hks:D (2.8) BS01 DS9 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9UGN5 40228437
    824932 8hku:AL1P (2.72) BS01 rna ? GO:0003723 ... P35024 37604686
    824933 8hku:AL2P (2.72) BS01 rna ? GO:0002181 ... Q4JB43 37604686
    824934 8hku:AL3P (2.72) BS01 rna ? GO:0003723 ... Q4JB40 37604686
    824935 8hku:AL4P (2.72) BS01 rna ? GO:0003735 ... Q4JB41 37604686
    824936 8hku:AL5P (2.72) BS01 rna ? GO:0000049 ... P41202 37604686
    824937 8hku:AL5P (2.72) BS02 rna ? GO:0000049 ... P41202 37604686
    824938 8hku:AL6P (2.72) BS01 rna ? GO:0002181 ... O05637 37604686
    824939 8hku:ALX0 (2.72) BS01 rna ? GO:0003735 ... P38613 37604686
    824940 8hku:ARF1 (2.72) BS01 rna ? GO:0003747 ... Q4JA21 37604686
    824941 8hku:L10E (2.72) BS01 rna ? GO:0003735 ... Q4JC84 37604686
    824942 8hku:L13P (2.72) BS01 rna ? GO:0003729 ... P39473 37604686
    824943 8hku:L141 (2.72) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    824944 8hku:L142 (2.72) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    824945 8hku:L14P (2.72) BS01 rna ? GO:0003735 ... Q4JB50 37604686
    824946 8hku:L15E (2.72) BS01 rna ? GO:0003735 ... Q4JB20 37604686
    824947 8hku:L15P (2.72) BS01 rna ? GO:0003735 ... O05643 37604686
    824948 8hku:L18E (2.72) BS01 rna ? GO:0003735 ... P39474 37604686
    824949 8hku:L18P (2.72) BS01 rna ? GO:0000027 ... O05640 37604686
    824950 8hku:L18P (2.72) BS02 rna ? GO:0000027 ... O05640 37604686
    824951 8hku:L19E (2.72) BS01 rna ? GO:0003723 ... O05639 37604686
    824952 8hku:L21E (2.72) BS01 rna ? GO:0003735 ... Q4JB11 37604686
    824953 8hku:L21E (2.72) BS02 rna ? GO:0003735 ... Q4JB11 37604686
    824954 8hku:L22P (2.72) BS01 rna ? GO:0002181 ... Q4JB45 37604686
    824955 8hku:L23P (2.72) BS01 rna ? GO:0003735 ... Q4JB42 37604686
    824956 8hku:L24E (2.72) BS01 rna ? GO:0003735 ... Q4JAV2 37604686
    824957 8hku:L24P (2.72) BS01 rna ? GO:0003723 ... O05633 37604686
    824958 8hku:L29P (2.72) BS01 rna ? GO:0003735 ... Q4JB47 37604686
    824959 8hku:L30E (2.72) BS01 rna ? GO:0003723 ... P11522 37604686
    824960 8hku:L30P (2.72) BS01 rna ? GO:0000463 ... O05642 37604686
    824961 8hku:L30P (2.72) BS02 rna ? GO:0000463 ... O05642 37604686
    824962 8hku:L31E (2.72) BS01 rna ? GO:0003735 ... P38618 37604686
    824963 8hku:L32E (2.72) BS01 rna ? GO:0003735 ... O05638 37604686
    824964 8hku:L34E (2.72) BS01 rna ? GO:0003735 ... O05981 37604686
    824965 8hku:L37A (2.72) BS01 rna ? GO:0003735 ... Q4JB29 37604686
    824966 8hku:L37E (2.72) BS01 rna ? GO:0003735 ... Q4JAZ9 37604686
    824967 8hku:L39E (2.72) BS01 rna ? GO:0003735 ... P13005 37604686
    824968 8hku:L40E (2.72) BS01 rna ? GO:0003735 ... Q4JAP0 37604686
    824969 8hku:L44E (2.72) BS01 rna ? GO:0003735 ... Q4J9B2 37604686
    824970 8hku:L44E (2.72) BS02 rna ? GO:0003735 ... Q4J9B2 37604686
    824971 8hku:L45A (2.72) BS01 rna ? N/A Q4J9G6 37604686
    824972 8hku:L46A (2.72) BS01 rna ? N/A Q4J953 37604686
    824973 8hku:L47A (2.72) BS01 rna ? N/A F2Z6C4 37604686
    824974 8hku:L7A1 (2.72) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    824975 8hku:L7A2 (2.72) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    824976 8hkv:AL2P (4.94) BS01 rna ? GO:0002181 ... Q4JB43 37604686
    824977 8hkv:AL3P (4.94) BS01 rna ? GO:0003723 ... Q4JB40 37604686
    824978 8hkv:AL4P (4.94) BS01 rna ? GO:0003735 ... Q4JB41 37604686
    824979 8hkv:AL5P (4.94) BS01 rna ? GO:0000049 ... P41202 37604686
    824980 8hkv:AL5P (4.94) BS02 rna ? GO:0000049 ... P41202 37604686
    824981 8hkv:AL6P (4.94) BS01 rna ? GO:0002181 ... O05637 37604686
    824982 8hkv:ALX0 (4.94) BS01 rna ? GO:0003735 ... P38613 37604686
    824983 8hkv:ALX0 (4.94) BS02 rna ? GO:0003735 ... P38613 37604686
    824984 8hkv:L10E (4.94) BS01 rna ? GO:0003735 ... Q4JC84 37604686
    824985 8hkv:L10E (4.94) BS02 rna ? GO:0003735 ... Q4JC84 37604686
    824986 8hkv:L13P (4.94) BS01 rna ? GO:0003729 ... P39473 37604686
    824987 8hkv:L141 (4.94) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    824988 8hkv:L142 (4.94) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    824989 8hkv:L14P (4.94) BS01 rna ? GO:0003735 ... Q4JB50 37604686
    824990 8hkv:L15E (4.94) BS01 rna ? GO:0003735 ... Q4JB20 37604686
    824991 8hkv:L15P (4.94) BS01 rna ? GO:0003735 ... O05643 37604686
    824992 8hkv:L18E (4.94) BS01 rna ? GO:0003735 ... P39474 37604686
    824993 8hkv:L18P (4.94) BS01 rna ? GO:0000027 ... O05640 37604686
    824994 8hkv:L18P (4.94) BS02 rna ? GO:0000027 ... O05640 37604686
    824995 8hkv:L19E (4.94) BS01 rna ? GO:0003723 ... O05639 37604686
    824996 8hkv:L21E (4.94) BS01 rna ? GO:0003735 ... Q4JB11 37604686
    824997 8hkv:L21E (4.94) BS02 rna ? GO:0003735 ... Q4JB11 37604686
    824998 8hkv:L22P (4.94) BS01 rna ? GO:0002181 ... Q4JB45 37604686
    824999 8hkv:L23P (4.94) BS01 rna ? GO:0003735 ... Q4JB42 37604686
    825000 8hkv:L24E (4.94) BS01 rna ? GO:0003735 ... Q4JAV2 37604686

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).