SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    825401 8hl3:L21E (4.8) BS02 rna ? GO:0003735 ... Q4JB11 37604686
    825402 8hl3:L22P (4.8) BS01 rna ? GO:0002181 ... Q4JB45 37604686
    825403 8hl3:L23P (4.8) BS01 rna ? GO:0003735 ... Q4JB42 37604686
    825404 8hl3:L24E (4.8) BS01 rna ? GO:0003735 ... Q4JAV2 37604686
    825405 8hl3:L24P (4.8) BS01 rna ? GO:0003723 ... O05633 37604686
    825406 8hl3:L29P (4.8) BS01 rna ? GO:0003735 ... Q4JB47 37604686
    825407 8hl3:L30E (4.8) BS01 rna ? GO:0003723 ... P11522 37604686
    825408 8hl3:L30P (4.8) BS01 rna ? GO:0000463 ... O05642 37604686
    825409 8hl3:L31E (4.8) BS01 rna ? GO:0003735 ... P38618 37604686
    825410 8hl3:L32E (4.8) BS01 rna ? GO:0003735 ... O05638 37604686
    825411 8hl3:L34E (4.8) BS01 rna ? GO:0003735 ... O05981 37604686
    825412 8hl3:L37A (4.8) BS01 rna ? GO:0003735 ... Q4JB29 37604686
    825413 8hl3:L37E (4.8) BS01 rna ? GO:0003735 ... Q4JAZ9 37604686
    825414 8hl3:L39E (4.8) BS01 rna ? GO:0003735 ... P13005 37604686
    825415 8hl3:L40E (4.8) BS01 rna ? GO:0003735 ... Q4JAP0 37604686
    825416 8hl3:L44E (4.8) BS01 rna ? GO:0003735 ... Q4J9B2 37604686
    825417 8hl3:L45A (4.8) BS01 rna ? N/A Q4J9G6 37604686
    825418 8hl3:L46A (4.8) BS01 rna ? N/A Q4J953 37604686
    825419 8hl3:L47A (4.8) BS01 rna ? N/A F2Z6C4 37604686
    825420 8hl3:L7A1 (4.8) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    825421 8hl3:L7A2 (4.8) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    825422 8hl3:S10P (4.8) BS01 rna ? GO:0000049 ... P17199 37604686
    825423 8hl3:S11P (4.8) BS01 rna ? GO:0003735 ... P39469 37604686
    825424 8hl3:S12P (4.8) BS01 rna ? GO:0003735 ... P11524 37604686
    825425 8hl3:S13P (4.8) BS01 rna ? GO:0003676 ... P39470 37604686
    825426 8hl3:S14P (4.8) BS01 rna ? GO:0002181 ... O05635 37604686
    825427 8hl3:S15P (4.8) BS01 rna ? GO:0003735 ... Q4JAI3 37604686
    825428 8hl3:S17E (4.8) BS01 rna ? GO:0003735 ... Q4JAX5 37604686
    825429 8hl3:S17P (4.8) BS01 rna ? GO:0003735 ... Q4JB49 37604686
    825430 8hl3:S19E (4.8) BS01 rna ? GO:0000028 ... Q4J8U1 37604686
    825431 8hl3:S19P (4.8) BS01 rna ? GO:0003723 ... Q4JB44 37604686
    825432 8hl3:S24E (4.8) BS01 rna ? GO:0003735 ... Q4JAF9 37604686
    825433 8hl3:S27A (4.8) BS01 rna ? GO:0003735 ... Q4JAG0 37604686
    825434 8hl3:S27E (4.8) BS01 rna ? GO:0003735 ... Q4J9B1 37604686
    825435 8hl3:S28E (4.8) BS01 rna ? GO:0003735 ... Q4JAV1 37604686
    825436 8hl3:S3AE (4.8) BS01 rna ? GO:0003735 ... Q4JB17 37604686
    825437 8hl3:SL7A (4.8) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    825438 8hl4:AEFG (4.62) BS01 rna ? GO:0003746 ... P23112 37604686
    825439 8hl4:AEFG (4.62) BS02 rna ? GO:0003746 ... P23112 37604686
    825440 8hl4:AEFG (4.62) BS03 GNP ? GO:0003746 ... P23112 37604686
    825441 8hl4:AL1P (4.62) BS01 rna ? GO:0003723 ... P35024 37604686
    825442 8hl4:AL2P (4.62) BS01 rna ? GO:0002181 ... Q4JB43 37604686
    825443 8hl4:AL3P (4.62) BS01 rna ? GO:0003723 ... Q4JB40 37604686
    825444 8hl4:AL4P (4.62) BS01 rna ? GO:0003735 ... Q4JB41 37604686
    825445 8hl4:AL5P (4.62) BS01 rna ? GO:0000049 ... P41202 37604686
    825446 8hl4:AL5P (4.62) BS02 rna ? GO:0000049 ... P41202 37604686
    825447 8hl4:AL6P (4.62) BS01 rna ? GO:0002181 ... O05637 37604686
    825448 8hl4:ALX0 (4.62) BS01 rna ? GO:0003735 ... P38613 37604686
    825449 8hl4:AS2P (4.62) BS01 rna ? GO:0003735 ... P39478 37604686
    825450 8hl4:AS2P (4.62) BS02 UNK ? GO:0003735 ... P39478 37604686
    825451 8hl4:AS2P (4.62) BS03 UNK ? GO:0003735 ... P39478 37604686
    825452 8hl4:AS3P (4.62) BS01 rna ? GO:0003676 ... Q4JB46 37604686
    825453 8hl4:AS4E (4.62) BS01 rna ? GO:0003723 ... O05634 37604686
    825454 8hl4:AS4P (4.62) BS01 rna ? GO:0003723 ... P39467 37604686
    825455 8hl4:AS5P (4.62) BS01 rna ? GO:0003723 ... O05641 37604686
    825456 8hl4:AS5P (4.62) BS02 UNK ? GO:0003723 ... O05641 37604686
    825457 8hl4:AS5P (4.62) BS03 UNK ? GO:0003723 ... O05641 37604686
    825458 8hl4:AS5P (4.62) BS04 UNK ? GO:0003723 ... O05641 37604686
    825459 8hl4:AS6E (4.62) BS01 rna ? GO:0003735 ... Q4JAI1 37604686
    825460 8hl4:AS7P (4.62) BS01 rna ? GO:0003723 ... P17198 37604686
    825461 8hl4:AS8E (4.62) BS01 rna ? GO:0003735 ... Q4JAP5 37604686
    825462 8hl4:AS8E (4.62) BS02 rna ? GO:0003735 ... Q4JAP5 37604686
    825463 8hl4:AS8P (4.62) BS01 rna ? GO:0003735 ... O05636 37604686
    825464 8hl4:AS9P (4.62) BS01 rna ? GO:0000462 ... P39468 37604686
    825465 8hl4:L10E (4.62) BS01 rna ? GO:0003735 ... Q4JC84 37604686
    825466 8hl4:L10E (4.62) BS02 rna ? GO:0003735 ... Q4JC84 37604686
    825467 8hl4:L10E (4.62) BS03 rna ? GO:0003735 ... Q4JC84 37604686
    825468 8hl4:L13P (4.62) BS01 rna ? GO:0003729 ... P39473 37604686
    825469 8hl4:L141 (4.62) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    825470 8hl4:L142 (4.62) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    825471 8hl4:L14P (4.62) BS01 rna ? GO:0003735 ... Q4JB50 37604686
    825472 8hl4:L15E (4.62) BS01 rna ? GO:0003735 ... Q4JB20 37604686
    825473 8hl4:L15P (4.62) BS01 rna ? GO:0003735 ... O05643 37604686
    825474 8hl4:L18E (4.62) BS01 rna ? GO:0003735 ... P39474 37604686
    825475 8hl4:L18P (4.62) BS01 rna ? GO:0000027 ... O05640 37604686
    825476 8hl4:L18P (4.62) BS02 rna ? GO:0000027 ... O05640 37604686
    825477 8hl4:L19E (4.62) BS01 rna ? GO:0003723 ... O05639 37604686
    825478 8hl4:L21E (4.62) BS01 rna ? GO:0003735 ... Q4JB11 37604686
    825479 8hl4:L21E (4.62) BS02 rna ? GO:0003735 ... Q4JB11 37604686
    825480 8hl4:L22P (4.62) BS01 rna ? GO:0002181 ... Q4JB45 37604686
    825481 8hl4:L23P (4.62) BS01 rna ? GO:0003735 ... Q4JB42 37604686
    825482 8hl4:L24E (4.62) BS01 rna ? GO:0003735 ... Q4JAV2 37604686
    825483 8hl4:L24P (4.62) BS01 rna ? GO:0003723 ... O05633 37604686
    825484 8hl4:L29P (4.62) BS01 rna ? GO:0003735 ... Q4JB47 37604686
    825485 8hl4:L30E (4.62) BS01 rna ? GO:0003723 ... P11522 37604686
    825486 8hl4:L30P (4.62) BS01 rna ? GO:0000463 ... O05642 37604686
    825487 8hl4:L30P (4.62) BS02 rna ? GO:0000463 ... O05642 37604686
    825488 8hl4:L31E (4.62) BS01 rna ? GO:0003735 ... P38618 37604686
    825489 8hl4:L32E (4.62) BS01 rna ? GO:0003735 ... O05638 37604686
    825490 8hl4:L34E (4.62) BS01 rna ? GO:0003735 ... O05981 37604686
    825491 8hl4:L37A (4.62) BS01 rna ? GO:0003735 ... Q4JB29 37604686
    825492 8hl4:L37E (4.62) BS01 rna ? GO:0003735 ... Q4JAZ9 37604686
    825493 8hl4:L39E (4.62) BS01 rna ? GO:0003735 ... P13005 37604686
    825494 8hl4:L40E (4.62) BS01 rna ? GO:0003735 ... Q4JAP0 37604686
    825495 8hl4:L44E (4.62) BS01 rna ? GO:0003735 ... Q4J9B2 37604686
    825496 8hl4:L45A (4.62) BS01 rna ? N/A Q4J9G6 37604686
    825497 8hl4:L46A (4.62) BS01 rna ? N/A Q4J953 37604686
    825498 8hl4:L47A (4.62) BS01 rna ? N/A F2Z6C4 37604686
    825499 8hl4:L7A1 (4.62) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    825500 8hl4:L7A2 (4.62) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    825501 8hl4:S10P (4.62) BS01 rna ? GO:0000049 ... P17199 37604686
    825502 8hl4:S11P (4.62) BS01 rna ? GO:0003735 ... P39469 37604686
    825503 8hl4:S12P (4.62) BS01 rna ? GO:0003735 ... P11524 37604686
    825504 8hl4:S13P (4.62) BS01 rna ? GO:0003676 ... P39470 37604686
    825505 8hl4:S14P (4.62) BS01 rna ? GO:0002181 ... O05635 37604686
    825506 8hl4:S15P (4.62) BS01 rna ? GO:0003735 ... Q4JAI3 37604686
    825507 8hl4:S15P (4.62) BS02 rna ? GO:0003735 ... Q4JAI3 37604686
    825508 8hl4:S17E (4.62) BS01 rna ? GO:0003735 ... Q4JAX5 37604686
    825509 8hl4:S17P (4.62) BS01 rna ? GO:0003735 ... Q4JB49 37604686
    825510 8hl4:S19E (4.62) BS01 rna ? GO:0000028 ... Q4J8U1 37604686
    825511 8hl4:S19P (4.62) BS01 rna ? GO:0003723 ... Q4JB44 37604686
    825512 8hl4:S24E (4.62) BS01 rna ? GO:0003735 ... Q4JAF9 37604686
    825513 8hl4:S27A (4.62) BS01 rna ? GO:0003735 ... Q4JAG0 37604686
    825514 8hl4:S27E (4.62) BS01 rna ? GO:0003735 ... Q4J9B1 37604686
    825515 8hl4:S28E (4.62) BS01 rna ? GO:0003735 ... Q4JAV1 37604686
    825516 8hl4:S3AE (4.62) BS01 rna ? GO:0003735 ... Q4JB17 37604686
    825517 8hl4:SL7A (4.62) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    825518 8hl5:AL1P (5.72) BS01 rna ? GO:0003723 ... P35024 37604686
    825519 8hl5:AL2P (5.72) BS01 rna ? GO:0002181 ... Q4JB43 37604686
    825520 8hl5:AL3P (5.72) BS01 rna ? GO:0003723 ... Q4JB40 37604686
    825521 8hl5:AL4P (5.72) BS01 rna ? GO:0003735 ... Q4JB41 37604686
    825522 8hl5:AL5P (5.72) BS01 rna ? GO:0000049 ... P41202 37604686
    825523 8hl5:AL5P (5.72) BS02 rna ? GO:0000049 ... P41202 37604686
    825524 8hl5:AL6P (5.72) BS01 rna ? GO:0002181 ... O05637 37604686
    825525 8hl5:ALX0 (5.72) BS01 rna ? GO:0003735 ... P38613 37604686
    825526 8hl5:AS2P (5.72) BS01 rna ? GO:0003735 ... P39478 37604686
    825527 8hl5:AS3P (5.72) BS01 rna ? GO:0003676 ... Q4JB46 37604686
    825528 8hl5:AS4E (5.72) BS01 rna ? GO:0003723 ... O05634 37604686
    825529 8hl5:AS4P (5.72) BS01 rna ? GO:0003723 ... P39467 37604686
    825530 8hl5:AS5P (5.72) BS01 rna ? GO:0003723 ... O05641 37604686
    825531 8hl5:AS5P (5.72) BS02 UNK ? GO:0003723 ... O05641 37604686
    825532 8hl5:AS5P (5.72) BS03 UNK ? GO:0003723 ... O05641 37604686
    825533 8hl5:AS5P (5.72) BS04 UNK ? GO:0003723 ... O05641 37604686
    825534 8hl5:AS6E (5.72) BS01 rna ? GO:0003735 ... Q4JAI1 37604686
    825535 8hl5:AS7P (5.72) BS01 rna ? GO:0003723 ... P17198 37604686
    825536 8hl5:AS8E (5.72) BS01 rna ? GO:0003735 ... Q4JAP5 37604686
    825537 8hl5:AS8P (5.72) BS01 rna ? GO:0003735 ... O05636 37604686
    825538 8hl5:AS8P (5.72) BS02 UNK ? GO:0003735 ... O05636 37604686
    825539 8hl5:AS9P (5.72) BS01 rna ? GO:0000462 ... P39468 37604686
    825540 8hl5:L10E (5.72) BS01 rna ? GO:0003735 ... Q4JC84 37604686
    825541 8hl5:L10E (5.72) BS02 rna ? GO:0003735 ... Q4JC84 37604686
    825542 8hl5:L10E (5.72) BS03 rna ? GO:0003735 ... Q4JC84 37604686
    825543 8hl5:L13P (5.72) BS01 rna ? GO:0003729 ... P39473 37604686
    825544 8hl5:L141 (5.72) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    825545 8hl5:L142 (5.72) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    825546 8hl5:L14P (5.72) BS01 rna ? GO:0003735 ... Q4JB50 37604686
    825547 8hl5:L14P (5.72) BS02 rna ? GO:0003735 ... Q4JB50 37604686
    825548 8hl5:L15E (5.72) BS01 rna ? GO:0003735 ... Q4JB20 37604686
    825549 8hl5:L15P (5.72) BS01 rna ? GO:0003735 ... O05643 37604686
    825550 8hl5:L18E (5.72) BS01 rna ? GO:0003735 ... P39474 37604686
    825551 8hl5:L18P (5.72) BS01 rna ? GO:0000027 ... O05640 37604686
    825552 8hl5:L18P (5.72) BS02 rna ? GO:0000027 ... O05640 37604686
    825553 8hl5:L19E (5.72) BS01 rna ? GO:0003723 ... O05639 37604686
    825554 8hl5:L21E (5.72) BS01 rna ? GO:0003735 ... Q4JB11 37604686
    825555 8hl5:L21E (5.72) BS02 rna ? GO:0003735 ... Q4JB11 37604686
    825556 8hl5:L22P (5.72) BS01 rna ? GO:0002181 ... Q4JB45 37604686
    825557 8hl5:L23P (5.72) BS01 rna ? GO:0003735 ... Q4JB42 37604686
    825558 8hl5:L24E (5.72) BS01 rna ? GO:0003735 ... Q4JAV2 37604686
    825559 8hl5:L24P (5.72) BS01 rna ? GO:0003723 ... O05633 37604686
    825560 8hl5:L29P (5.72) BS01 rna ? GO:0003735 ... Q4JB47 37604686
    825561 8hl5:L30E (5.72) BS01 rna ? GO:0003723 ... P11522 37604686
    825562 8hl5:L30P (5.72) BS01 rna ? GO:0000463 ... O05642 37604686
    825563 8hl5:L30P (5.72) BS02 rna ? GO:0000463 ... O05642 37604686
    825564 8hl5:L31E (5.72) BS01 rna ? GO:0003735 ... P38618 37604686
    825565 8hl5:L32E (5.72) BS01 rna ? GO:0003735 ... O05638 37604686
    825566 8hl5:L34E (5.72) BS01 rna ? GO:0003735 ... O05981 37604686
    825567 8hl5:L37A (5.72) BS01 rna ? GO:0003735 ... Q4JB29 37604686
    825568 8hl5:L37E (5.72) BS01 rna ? GO:0003735 ... Q4JAZ9 37604686
    825569 8hl5:L39E (5.72) BS01 rna ? GO:0003735 ... P13005 37604686
    825570 8hl5:L40E (5.72) BS01 rna ? GO:0003735 ... Q4JAP0 37604686
    825571 8hl5:L44E (5.72) BS01 rna ? GO:0003735 ... Q4J9B2 37604686
    825572 8hl5:L44E (5.72) BS02 rna ? GO:0003735 ... Q4J9B2 37604686
    825573 8hl5:L45A (5.72) BS01 rna ? N/A Q4J9G6 37604686
    825574 8hl5:L46A (5.72) BS01 rna ? N/A Q4J953 37604686
    825575 8hl5:L47A (5.72) BS01 rna ? N/A F2Z6C4 37604686
    825576 8hl5:L7A1 (5.72) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    825577 8hl5:L7A2 (5.72) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    825578 8hl5:S10P (5.72) BS01 rna ? GO:0000049 ... P17199 37604686
    825579 8hl5:S11P (5.72) BS01 rna ? GO:0003735 ... P39469 37604686
    825580 8hl5:S12P (5.72) BS01 rna ? GO:0003735 ... P11524 37604686
    825581 8hl5:S13P (5.72) BS01 rna ? GO:0003676 ... P39470 37604686
    825582 8hl5:S14P (5.72) BS01 rna ? GO:0002181 ... O05635 37604686
    825583 8hl5:S15P (5.72) BS01 rna ? GO:0003735 ... Q4JAI3 37604686
    825584 8hl5:S17E (5.72) BS01 rna ? GO:0003735 ... Q4JAX5 37604686
    825585 8hl5:S17P (5.72) BS01 rna ? GO:0003735 ... Q4JB49 37604686
    825586 8hl5:S19E (5.72) BS01 rna ? GO:0000028 ... Q4J8U1 37604686
    825587 8hl5:S19P (5.72) BS01 rna ? GO:0003723 ... Q4JB44 37604686
    825588 8hl5:S24E (5.72) BS01 rna ? GO:0003735 ... Q4JAF9 37604686
    825589 8hl5:S27A (5.72) BS01 rna ? GO:0003735 ... Q4JAG0 37604686
    825590 8hl5:S27E (5.72) BS01 rna ? GO:0003735 ... Q4J9B1 37604686
    825591 8hl5:S28E (5.72) BS01 rna ? GO:0003735 ... Q4JAV1 37604686
    825592 8hl5:S3AE (5.72) BS01 rna ? GO:0003735 ... Q4JB17 37604686
    825593 8hl5:SL7A (5.72) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    825594 8hl6:A (1.8) BS01 SAM 2.1.1.- GO:0005515 ... Q9H867 37456834
    825595 8hl7:A (2.8) BS01 SAH 2.1.1.- GO:0005515 ... Q9H867 37456834
    825596 8hl7:B (2.8) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 37456834
    825597 8hl8:A (2.5) BS01 MN ? N/A G8HX37 36642179
    825598 8hl8:C (2.5) BS01 MN ? N/A G8HX37 36642179
    825599 8hla:A (2.81) BS01 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    825600 8hla:A (2.81) BS02 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).