SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    825801 8i9w:LN (3.1) BS01 rna ? GO:0002181 ... G0RZ88 37129998
    825802 8i9w:LN (3.1) BS02 rna ? GO:0002181 ... G0RZ88 37129998
    825803 8i9w:LO (3.1) BS01 rna ? GO:0003729 ... G0SH61 37129998
    825804 8i9w:LP (3.1) BS01 rna ? GO:0002181 ... G0SGY1 37129998
    825805 8i9w:LP (3.1) BS02 rna ? GO:0002181 ... G0SGY1 37129998
    825806 8i9w:LQ (3.1) BS01 rna ? GO:0003723 ... G0S9B5 37129998
    825807 8i9w:LS (3.1) BS01 rna ? GO:0003735 ... G0SCE2 37129998
    825808 8i9w:LT (3.1) BS01 rna ? GO:0003735 ... G0S0Z3 37129998
    825809 8i9w:LV (3.1) BS01 rna ? GO:0003735 ... G0SI44 37129998
    825810 8i9w:LX (3.1) BS01 rna ? GO:0003735 ... G0S507 37129998
    825811 8i9w:LX (3.1) BS02 rna ? GO:0003735 ... G0S507 37129998
    825812 8i9w:LY (3.1) BS01 rna ? GO:0003723 ... G0RYN9 37129998
    825813 8i9w:LY (3.1) BS02 rna ? GO:0003723 ... G0RYN9 37129998
    825814 8i9w:Ld (3.1) BS01 rna ? GO:0002181 ... G0SD68 37129998
    825815 8i9w:Le (3.1) BS01 rna ? GO:0003735 ... G0S6V4 37129998
    825816 8i9w:Lf (3.1) BS01 rna ? GO:0003735 ... G0SCL3 37129998
    825817 8i9w:Lh (3.1) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    825818 8i9w:Lh (3.1) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    825819 8i9w:Li (3.1) BS01 rna ? GO:0003735 ... G0SBN1 37129998
    825820 8i9w:Lj (3.1) BS01 rna ? GO:0003723 ... G0S101 37129998
    825821 8i9w:Lj (3.1) BS02 rna ? GO:0003723 ... G0S101 37129998
    825822 8i9w:Lj (3.1) BS03 ZN ? GO:0003723 ... G0S101 37129998
    825823 8i9w:Lq (3.1) BS01 rna ? GO:0003723 ... G0S4Z9 37129998
    825824 8i9x:CA (2.8) BS01 rna ? GO:0000027 ... G0RXZ3 37129998
    825825 8i9x:CB (2.8) BS01 rna ? N/A G0S7X0 37129998
    825826 8i9x:CC (2.8) BS01 rna ? GO:0000463 ... G0SCK6 37129998
    825827 8i9x:CE (2.8) BS01 rna 3.6.4.13 GO:0003676 ... G0RYU9 37129998
    825828 8i9x:CF (2.8) BS01 rna ? GO:0000027 ... G0S616 37129998
    825829 8i9x:CG (2.8) BS01 rna ? GO:0003723 ... G0S435 37129998
    825830 8i9x:CH (2.8) BS01 rna ? GO:0005525 ... G0S8F1 37129998
    825831 8i9x:CH (2.8) BS02 GTP ? GO:0005525 ... G0S8F1 37129998
    825832 8i9x:CI (2.8) BS01 rna ? GO:0003676 ... G0S1H0 37129998
    825833 8i9x:CJ (2.8) BS01 rna ? GO:0000463 ... G0SHX6 37129998
    825834 8i9x:CJ (2.8) BS02 rna ? GO:0000463 ... G0SHX6 37129998
    825835 8i9x:CK (2.8) BS01 rna ? GO:0005634 ... G0S081 37129998
    825836 8i9x:CL (2.8) BS01 rna ? GO:0005525 ... G0SEW3 37129998
    825837 8i9x:CM (2.8) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    825838 8i9x:CM (2.8) BS02 rna ? GO:0000463 ... G0SFL0 37129998
    825839 8i9x:CN (2.8) BS01 rna ? GO:0000054 ... G0S683 37129998
    825840 8i9x:CO (2.8) BS01 rna ? GO:0030687 ... G0SHK0 37129998
    825841 8i9x:CP (2.8) BS01 rna ? GO:0000470 ... G0SHQ0 37129998
    825842 8i9x:CQ (2.8) BS01 rna ? GO:0003735 ... G0S497 37129998
    825843 8i9x:CQ (2.8) BS02 ZN ? GO:0003735 ... G0S497 37129998
    825844 8i9x:CR (2.8) BS01 rna ? GO:0005730 ... G0S832 37129998
    825845 8i9x:CR (2.8) BS02 rna ? GO:0005730 ... G0S832 37129998
    825846 8i9x:CS (2.8) BS01 rna ? GO:0000463 ... G0SGD8 37129998
    825847 8i9x:CT (2.8) BS01 rna ? GO:0003682 ... G0S5L0 37129998
    825848 8i9x:CU (2.8) BS01 rna ? GO:0005634 ... G0SGC2 37129998
    825849 8i9x:CV (2.8) BS01 rna ? GO:0003735 ... G0SHJ6 37129998
    825850 8i9x:CX (2.8) BS01 rna ? GO:0003729 ... G0SGJ0 37129998
    825851 8i9x:CY (2.8) BS01 rna ? GO:0005634 ... G0SD05 37129998
    825852 8i9x:Cb (2.8) BS01 rna 3.6.4.13 GO:0003676 ... G0S5S8 37129998
    825853 8i9x:Cz (2.8) BS01 rna ? GO:0005634 ... G0SCP3 37129998
    825854 8i9x:LB (2.8) BS01 rna ? GO:0003723 ... G0RXW1 37129998
    825855 8i9x:LC (2.8) BS01 rna ? GO:0003735 ... G0SFC3 37129998
    825856 8i9x:LC (2.8) BS02 rna ? GO:0003735 ... G0SFC3 37129998
    825857 8i9x:LE (2.8) BS01 rna ? GO:0000027 ... G0S0D6 37129998
    825858 8i9x:LF (2.8) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    825859 8i9x:LG (2.8) BS01 rna ? GO:0003723 ... G0SAJ9 37129998
    825860 8i9x:LG (2.8) BS02 rna ? GO:0003723 ... G0SAJ9 37129998
    825861 8i9x:LH (2.8) BS01 rna ? GO:0003735 ... G0S0E5 37129998
    825862 8i9x:LK (2.8) BS01 rna ? GO:0003735 ... G0SGH8 37129998
    825863 8i9x:LL (2.8) BS01 rna ? GO:0003723 ... G0S992 37129998
    825864 8i9x:LL (2.8) BS02 rna ? GO:0003723 ... G0S992 37129998
    825865 8i9x:LM (2.8) BS01 rna ? GO:0003723 ... G0S1R0 37129998
    825866 8i9x:LN (2.8) BS01 rna ? GO:0002181 ... G0RZ88 37129998
    825867 8i9x:LN (2.8) BS02 rna ? GO:0002181 ... G0RZ88 37129998
    825868 8i9x:LO (2.8) BS01 rna ? GO:0003729 ... G0SH61 37129998
    825869 8i9x:LP (2.8) BS01 rna ? GO:0002181 ... G0SGY1 37129998
    825870 8i9x:LP (2.8) BS02 rna ? GO:0002181 ... G0SGY1 37129998
    825871 8i9x:LQ (2.8) BS01 rna ? GO:0003723 ... G0S9B5 37129998
    825872 8i9x:LR (2.8) BS01 rna ? GO:0003735 ... G0S9T3 37129998
    825873 8i9x:LS (2.8) BS01 rna ? GO:0003735 ... G0SCE2 37129998
    825874 8i9x:LT (2.8) BS01 rna ? GO:0003735 ... G0S0Z3 37129998
    825875 8i9x:LU (2.8) BS01 rna ? GO:0002181 ... G0SDS8 37129998
    825876 8i9x:LV (2.8) BS01 rna ? GO:0003735 ... G0SI44 37129998
    825877 8i9x:LX (2.8) BS01 rna ? GO:0003735 ... G0S507 37129998
    825878 8i9x:LX (2.8) BS02 rna ? GO:0003735 ... G0S507 37129998
    825879 8i9x:LY (2.8) BS01 rna ? GO:0003723 ... G0RYN9 37129998
    825880 8i9x:LY (2.8) BS02 rna ? GO:0003723 ... G0RYN9 37129998
    825881 8i9x:LZ (2.8) BS01 rna ? GO:0003735 ... G0RZE9 37129998
    825882 8i9x:Lc (2.8) BS01 rna ? GO:0003723 ... G0SEI0 37129998
    825883 8i9x:Ld (2.8) BS01 rna ? GO:0002181 ... G0SD68 37129998
    825884 8i9x:Le (2.8) BS01 rna ? GO:0003735 ... G0S6V4 37129998
    825885 8i9x:Lf (2.8) BS01 rna ? GO:0003735 ... G0SCL3 37129998
    825886 8i9x:Lg (2.8) BS01 rna ? GO:0003735 ... G0SFN0 37129998
    825887 8i9x:Lh (2.8) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    825888 8i9x:Lh (2.8) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    825889 8i9x:Li (2.8) BS01 rna ? GO:0003735 ... G0SBN1 37129998
    825890 8i9x:Lj (2.8) BS01 rna ? GO:0003723 ... G0S101 37129998
    825891 8i9x:Lj (2.8) BS02 rna ? GO:0003723 ... G0S101 37129998
    825892 8i9x:Lj (2.8) BS03 ZN ? GO:0003723 ... G0S101 37129998
    825893 8i9x:Lk (2.8) BS01 rna ? GO:0003735 ... G0SG89 37129998
    825894 8i9x:Ll (2.8) BS01 rna ? GO:0003735 ... Q2H9R2 37129998
    825895 8i9x:Ll (2.8) BS02 rna ? GO:0003735 ... Q2H9R2 37129998
    825896 8i9x:Lq (2.8) BS01 rna ? GO:0003723 ... G0S4Z9 37129998
    825897 8i9y:CA (3.1) BS01 rna ? GO:0000027 ... G0RXZ3 37129998
    825898 8i9y:CB (3.1) BS01 rna ? N/A G0S7X0 37129998
    825899 8i9y:CC (3.1) BS01 rna ? GO:0000463 ... G0SCK6 37129998
    825900 8i9y:CE (3.1) BS01 rna 3.6.4.13 GO:0003676 ... G0RYU9 37129998
    825901 8i9y:CF (3.1) BS01 rna ? GO:0000027 ... G0S616 37129998
    825902 8i9y:CG (3.1) BS01 rna ? GO:0003723 ... G0S435 37129998
    825903 8i9y:CH (3.1) BS01 rna ? GO:0005525 ... G0S8F1 37129998
    825904 8i9y:CH (3.1) BS02 GTP ? GO:0005525 ... G0S8F1 37129998
    825905 8i9y:CI (3.1) BS01 rna ? GO:0003676 ... G0S1H0 37129998
    825906 8i9y:CJ (3.1) BS01 rna ? GO:0000463 ... G0SHX6 37129998
    825907 8i9y:CJ (3.1) BS02 rna ? GO:0000463 ... G0SHX6 37129998
    825908 8i9y:CK (3.1) BS01 rna ? GO:0005634 ... G0S081 37129998
    825909 8i9y:CL (3.1) BS01 rna ? GO:0005525 ... G0SEW3 37129998
    825910 8i9y:CM (3.1) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    825911 8i9y:CM (3.1) BS02 rna ? GO:0000463 ... G0SFL0 37129998
    825912 8i9y:CN (3.1) BS01 rna ? GO:0000054 ... G0S683 37129998
    825913 8i9y:CO (3.1) BS01 rna ? GO:0030687 ... G0SHK0 37129998
    825914 8i9y:CP (3.1) BS01 rna ? GO:0000470 ... G0SHQ0 37129998
    825915 8i9y:CQ (3.1) BS01 rna ? GO:0003735 ... G0S497 37129998
    825916 8i9y:CQ (3.1) BS02 ZN ? GO:0003735 ... G0S497 37129998
    825917 8i9y:CR (3.1) BS01 rna ? GO:0005730 ... G0S832 37129998
    825918 8i9y:CR (3.1) BS02 rna ? GO:0005730 ... G0S832 37129998
    825919 8i9y:CS (3.1) BS01 rna ? GO:0000463 ... G0SGD8 37129998
    825920 8i9y:CT (3.1) BS01 rna ? GO:0003682 ... G0S5L0 37129998
    825921 8i9y:CU (3.1) BS01 rna ? GO:0005634 ... G0SGC2 37129998
    825922 8i9y:CV (3.1) BS01 rna ? GO:0003735 ... G0SHJ6 37129998
    825923 8i9y:CX (3.1) BS01 rna ? GO:0003729 ... G0SGJ0 37129998
    825924 8i9y:CY (3.1) BS01 rna ? GO:0005634 ... G0SD05 37129998
    825925 8i9y:Cz (3.1) BS01 rna ? GO:0005634 ... G0SCP3 37129998
    825926 8i9y:LB (3.1) BS01 rna ? GO:0003723 ... G0RXW1 37129998
    825927 8i9y:LC (3.1) BS01 rna ? GO:0003735 ... G0SFC3 37129998
    825928 8i9y:LC (3.1) BS02 rna ? GO:0003735 ... G0SFC3 37129998
    825929 8i9y:LE (3.1) BS01 rna ? GO:0000027 ... G0S0D6 37129998
    825930 8i9y:LF (3.1) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    825931 8i9y:LG (3.1) BS01 rna ? GO:0003723 ... G0SAJ9 37129998
    825932 8i9y:LG (3.1) BS02 rna ? GO:0003723 ... G0SAJ9 37129998
    825933 8i9y:LH (3.1) BS01 rna ? GO:0003735 ... G0S0E5 37129998
    825934 8i9y:LK (3.1) BS01 rna ? GO:0003735 ... G0SGH8 37129998
    825935 8i9y:LL (3.1) BS01 rna ? GO:0003723 ... G0S992 37129998
    825936 8i9y:LL (3.1) BS02 rna ? GO:0003723 ... G0S992 37129998
    825937 8i9y:LM (3.1) BS01 rna ? GO:0003723 ... G0S1R0 37129998
    825938 8i9y:LN (3.1) BS01 rna ? GO:0002181 ... G0RZ88 37129998
    825939 8i9y:LN (3.1) BS02 rna ? GO:0002181 ... G0RZ88 37129998
    825940 8i9y:LO (3.1) BS01 rna ? GO:0003729 ... G0SH61 37129998
    825941 8i9y:LP (3.1) BS01 rna ? GO:0002181 ... G0SGY1 37129998
    825942 8i9y:LP (3.1) BS02 rna ? GO:0002181 ... G0SGY1 37129998
    825943 8i9y:LQ (3.1) BS01 rna ? GO:0003723 ... G0S9B5 37129998
    825944 8i9y:LR (3.1) BS01 rna ? GO:0003735 ... G0S9T3 37129998
    825945 8i9y:LS (3.1) BS01 rna ? GO:0003735 ... G0SCE2 37129998
    825946 8i9y:LT (3.1) BS01 rna ? GO:0003735 ... G0S0Z3 37129998
    825947 8i9y:LU (3.1) BS01 rna ? GO:0002181 ... G0SDS8 37129998
    825948 8i9y:LV (3.1) BS01 rna ? GO:0003735 ... G0SI44 37129998
    825949 8i9y:LX (3.1) BS01 rna ? GO:0003735 ... G0S507 37129998
    825950 8i9y:LX (3.1) BS02 rna ? GO:0003735 ... G0S507 37129998
    825951 8i9y:LY (3.1) BS01 rna ? GO:0003723 ... G0RYN9 37129998
    825952 8i9y:LY (3.1) BS02 rna ? GO:0003723 ... G0RYN9 37129998
    825953 8i9y:LZ (3.1) BS01 rna ? GO:0003735 ... G0RZE9 37129998
    825954 8i9y:Lc (3.1) BS01 rna ? GO:0003723 ... G0SEI0 37129998
    825955 8i9y:Ld (3.1) BS01 rna ? GO:0002181 ... G0SD68 37129998
    825956 8i9y:Le (3.1) BS01 rna ? GO:0003735 ... G0S6V4 37129998
    825957 8i9y:Lf (3.1) BS01 rna ? GO:0003735 ... G0SCL3 37129998
    825958 8i9y:Lg (3.1) BS01 rna ? GO:0003735 ... G0SFN0 37129998
    825959 8i9y:Lh (3.1) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    825960 8i9y:Lh (3.1) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    825961 8i9y:Li (3.1) BS01 rna ? GO:0003735 ... G0SBN1 37129998
    825962 8i9y:Lj (3.1) BS01 rna ? GO:0003723 ... G0S101 37129998
    825963 8i9y:Lj (3.1) BS02 rna ? GO:0003723 ... G0S101 37129998
    825964 8i9y:Lj (3.1) BS03 ZN ? GO:0003723 ... G0S101 37129998
    825965 8i9y:Lk (3.1) BS01 rna ? GO:0003735 ... G0SG89 37129998
    825966 8i9y:Ll (3.1) BS01 rna ? GO:0003735 ... Q2H9R2 37129998
    825967 8i9y:Ll (3.1) BS02 rna ? GO:0003735 ... Q2H9R2 37129998
    825968 8i9y:Lq (3.1) BS01 rna ? GO:0003723 ... G0S4Z9 37129998
    825969 8i9z:CA (2.7) BS01 rna ? GO:0000027 ... G0RXZ3 37129998
    825970 8i9z:CB (2.7) BS01 rna ? N/A G0S7X0 37129998
    825971 8i9z:CC (2.7) BS01 rna ? GO:0000463 ... G0SCK6 37129998
    825972 8i9z:CD (2.7) BS01 rna ? GO:0000463 ... G0SFB5 37129998
    825973 8i9z:CE (2.7) BS01 rna 3.6.4.13 GO:0003676 ... G0RYU9 37129998
    825974 8i9z:CF (2.7) BS01 rna ? GO:0000027 ... G0S616 37129998
    825975 8i9z:CG (2.7) BS01 rna ? GO:0003723 ... G0S435 37129998
    825976 8i9z:CH (2.7) BS01 rna ? GO:0005525 ... G0S8F1 37129998
    825977 8i9z:CH (2.7) BS02 GTP ? GO:0005525 ... G0S8F1 37129998
    825978 8i9z:CI (2.7) BS01 rna ? GO:0003676 ... G0S1H0 37129998
    825979 8i9z:CJ (2.7) BS01 rna ? GO:0000463 ... G0SHX6 37129998
    825980 8i9z:CJ (2.7) BS02 rna ? GO:0000463 ... G0SHX6 37129998
    825981 8i9z:CK (2.7) BS01 rna ? GO:0005634 ... G0S081 37129998
    825982 8i9z:CL (2.7) BS01 rna ? GO:0005525 ... G0SEW3 37129998
    825983 8i9z:CM (2.7) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    825984 8i9z:CM (2.7) BS02 rna ? GO:0000463 ... G0SFL0 37129998
    825985 8i9z:CN (2.7) BS01 rna ? GO:0000054 ... G0S683 37129998
    825986 8i9z:CO (2.7) BS01 rna ? GO:0030687 ... G0SHK0 37129998
    825987 8i9z:CP (2.7) BS01 rna ? GO:0000470 ... G0SHQ0 37129998
    825988 8i9z:CQ (2.7) BS01 rna ? GO:0003735 ... G0S497 37129998
    825989 8i9z:CQ (2.7) BS02 ZN ? GO:0003735 ... G0S497 37129998
    825990 8i9z:CR (2.7) BS01 rna ? GO:0005730 ... G0S832 37129998
    825991 8i9z:CR (2.7) BS02 rna ? GO:0005730 ... G0S832 37129998
    825992 8i9z:CS (2.7) BS01 rna ? GO:0000463 ... G0SGD8 37129998
    825993 8i9z:CT (2.7) BS01 rna ? GO:0003682 ... G0S5L0 37129998
    825994 8i9z:CU (2.7) BS01 rna ? GO:0005634 ... G0SGC2 37129998
    825995 8i9z:CV (2.7) BS01 rna ? GO:0003735 ... G0SHJ6 37129998
    825996 8i9z:CW (2.7) BS01 rna 3.6.4.13 GO:0003676 ... G0RYG4 37129998
    825997 8i9z:CW (2.7) BS02 ADP 3.6.4.13 GO:0003676 ... G0RYG4 37129998
    825998 8i9z:CX (2.7) BS01 rna ? GO:0003729 ... G0SGJ0 37129998
    825999 8i9z:CY (2.7) BS01 rna ? GO:0005634 ... G0SD05 37129998
    826000 8i9z:Cz (2.7) BS01 rna ? GO:0005634 ... G0SCP3 37129998

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).