SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    826001 8i9z:LB (2.7) BS01 rna ? GO:0003723 ... G0RXW1 37129998
    826002 8i9z:LC (2.7) BS01 rna ? GO:0003735 ... G0SFC3 37129998
    826003 8i9z:LC (2.7) BS02 rna ? GO:0003735 ... G0SFC3 37129998
    826004 8i9z:LE (2.7) BS01 rna ? GO:0000027 ... G0S0D6 37129998
    826005 8i9z:LF (2.7) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    826006 8i9z:LG (2.7) BS01 rna ? GO:0003723 ... G0SAJ9 37129998
    826007 8i9z:LG (2.7) BS02 rna ? GO:0003723 ... G0SAJ9 37129998
    826008 8i9z:LH (2.7) BS01 rna ? GO:0003735 ... G0S0E5 37129998
    826009 8i9z:LK (2.7) BS01 rna ? GO:0003735 ... G0SGH8 37129998
    826010 8i9z:LL (2.7) BS01 rna ? GO:0003723 ... G0S992 37129998
    826011 8i9z:LL (2.7) BS02 rna ? GO:0003723 ... G0S992 37129998
    826012 8i9z:LM (2.7) BS01 rna ? GO:0003723 ... G0S1R0 37129998
    826013 8i9z:LN (2.7) BS01 rna ? GO:0002181 ... G0RZ88 37129998
    826014 8i9z:LN (2.7) BS02 rna ? GO:0002181 ... G0RZ88 37129998
    826015 8i9z:LO (2.7) BS01 rna ? GO:0003729 ... G0SH61 37129998
    826016 8i9z:LP (2.7) BS01 rna ? GO:0002181 ... G0SGY1 37129998
    826017 8i9z:LP (2.7) BS02 rna ? GO:0002181 ... G0SGY1 37129998
    826018 8i9z:LQ (2.7) BS01 rna ? GO:0003723 ... G0S9B5 37129998
    826019 8i9z:LR (2.7) BS01 rna ? GO:0003735 ... G0S9T3 37129998
    826020 8i9z:LS (2.7) BS01 rna ? GO:0003735 ... G0SCE2 37129998
    826021 8i9z:LT (2.7) BS01 rna ? GO:0003735 ... G0S0Z3 37129998
    826022 8i9z:LU (2.7) BS01 rna ? GO:0002181 ... G0SDS8 37129998
    826023 8i9z:LV (2.7) BS01 rna ? GO:0003735 ... G0SI44 37129998
    826024 8i9z:LX (2.7) BS01 rna ? GO:0003735 ... G0S507 37129998
    826025 8i9z:LX (2.7) BS02 rna ? GO:0003735 ... G0S507 37129998
    826026 8i9z:LY (2.7) BS01 rna ? GO:0003723 ... G0RYN9 37129998
    826027 8i9z:LY (2.7) BS02 rna ? GO:0003723 ... G0RYN9 37129998
    826028 8i9z:LZ (2.7) BS01 rna ? GO:0003735 ... G0RZE9 37129998
    826029 8i9z:Lc (2.7) BS01 rna ? GO:0003723 ... G0SEI0 37129998
    826030 8i9z:Ld (2.7) BS01 rna ? GO:0002181 ... G0SD68 37129998
    826031 8i9z:Le (2.7) BS01 rna ? GO:0003735 ... G0S6V4 37129998
    826032 8i9z:Lf (2.7) BS01 rna ? GO:0003735 ... G0SCL3 37129998
    826033 8i9z:Lg (2.7) BS01 rna ? GO:0003735 ... G0SFN0 37129998
    826034 8i9z:Lh (2.7) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    826035 8i9z:Lh (2.7) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    826036 8i9z:Li (2.7) BS01 rna ? GO:0003735 ... G0SBN1 37129998
    826037 8i9z:Lj (2.7) BS01 rna ? GO:0003723 ... G0S101 37129998
    826038 8i9z:Lj (2.7) BS02 rna ? GO:0003723 ... G0S101 37129998
    826039 8i9z:Lj (2.7) BS03 ZN ? GO:0003723 ... G0S101 37129998
    826040 8i9z:Lk (2.7) BS01 rna ? GO:0003735 ... G0SG89 37129998
    826041 8i9z:Ll (2.7) BS01 rna ? GO:0003735 ... Q2H9R2 37129998
    826042 8i9z:Ll (2.7) BS02 rna ? GO:0003735 ... Q2H9R2 37129998
    826043 8i9z:Lq (2.7) BS01 rna ? GO:0003723 ... G0S4Z9 37129998
    826044 8ia0:CA (2.7) BS01 rna ? GO:0000027 ... G0RXZ3 37129998
    826045 8ia0:CB (2.7) BS01 rna ? N/A G0S7X0 37129998
    826046 8ia0:CC (2.7) BS01 rna ? GO:0000463 ... G0SCK6 37129998
    826047 8ia0:CD (2.7) BS01 rna ? GO:0000463 ... G0SFB5 37129998
    826048 8ia0:CE (2.7) BS01 rna 3.6.4.13 GO:0003676 ... G0RYU9 37129998
    826049 8ia0:CF (2.7) BS01 rna ? GO:0000027 ... G0S616 37129998
    826050 8ia0:CG (2.7) BS01 rna ? GO:0003723 ... G0S435 37129998
    826051 8ia0:CH (2.7) BS01 rna ? GO:0005525 ... G0S8F1 37129998
    826052 8ia0:CH (2.7) BS02 GTP ? GO:0005525 ... G0S8F1 37129998
    826053 8ia0:CI (2.7) BS01 rna ? GO:0003676 ... G0S1H0 37129998
    826054 8ia0:CJ (2.7) BS01 rna ? GO:0000463 ... G0SHX6 37129998
    826055 8ia0:CJ (2.7) BS02 rna ? GO:0000463 ... G0SHX6 37129998
    826056 8ia0:CK (2.7) BS01 rna ? GO:0005634 ... G0S081 37129998
    826057 8ia0:CL (2.7) BS01 rna ? GO:0005525 ... G0SEW3 37129998
    826058 8ia0:CM (2.7) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    826059 8ia0:CM (2.7) BS02 rna ? GO:0000463 ... G0SFL0 37129998
    826060 8ia0:CN (2.7) BS01 rna ? GO:0000054 ... G0S683 37129998
    826061 8ia0:CO (2.7) BS01 rna ? GO:0030687 ... G0SHK0 37129998
    826062 8ia0:CP (2.7) BS01 rna ? GO:0000470 ... G0SHQ0 37129998
    826063 8ia0:CQ (2.7) BS01 rna ? GO:0003735 ... G0S497 37129998
    826064 8ia0:CQ (2.7) BS02 ZN ? GO:0003735 ... G0S497 37129998
    826065 8ia0:CR (2.7) BS01 rna ? GO:0005730 ... G0S832 37129998
    826066 8ia0:CR (2.7) BS02 rna ? GO:0005730 ... G0S832 37129998
    826067 8ia0:CS (2.7) BS01 rna ? GO:0000463 ... G0SGD8 37129998
    826068 8ia0:CT (2.7) BS01 rna ? GO:0003682 ... G0S5L0 37129998
    826069 8ia0:CU (2.7) BS01 rna ? GO:0005634 ... G0SGC2 37129998
    826070 8ia0:CV (2.7) BS01 rna ? GO:0003735 ... G0SHJ6 37129998
    826071 8ia0:CW (2.7) BS01 rna 3.6.4.13 GO:0003676 ... G0RYG4 37129998
    826072 8ia0:CW (2.7) BS02 ADP 3.6.4.13 GO:0003676 ... G0RYG4 37129998
    826073 8ia0:CX (2.7) BS01 rna ? GO:0003729 ... G0SGJ0 37129998
    826074 8ia0:CY (2.7) BS01 rna ? GO:0005634 ... G0SD05 37129998
    826075 8ia0:CZ (2.7) BS01 rna ? GO:0003723 ... G0S0I6 37129998
    826076 8ia0:Ca (2.7) BS01 rna ? GO:0005634 ... G0S7E9 37129998
    826077 8ia0:Cz (2.7) BS01 rna ? GO:0005634 ... G0SCP3 37129998
    826078 8ia0:LA (2.7) BS01 rna ? GO:0002181 ... G0S4P8 37129998
    826079 8ia0:LB (2.7) BS01 rna ? GO:0003723 ... G0RXW1 37129998
    826080 8ia0:LC (2.7) BS01 rna ? GO:0003735 ... G0SFC3 37129998
    826081 8ia0:LC (2.7) BS02 rna ? GO:0003735 ... G0SFC3 37129998
    826082 8ia0:LE (2.7) BS01 rna ? GO:0000027 ... G0S0D6 37129998
    826083 8ia0:LF (2.7) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    826084 8ia0:LG (2.7) BS01 rna ? GO:0003723 ... G0SAJ9 37129998
    826085 8ia0:LG (2.7) BS02 rna ? GO:0003723 ... G0SAJ9 37129998
    826086 8ia0:LH (2.7) BS01 rna ? GO:0003735 ... G0S0E5 37129998
    826087 8ia0:LK (2.7) BS01 rna ? GO:0003735 ... G0SGH8 37129998
    826088 8ia0:LL (2.7) BS01 rna ? GO:0003723 ... G0S992 37129998
    826089 8ia0:LL (2.7) BS02 rna ? GO:0003723 ... G0S992 37129998
    826090 8ia0:LM (2.7) BS01 rna ? GO:0003723 ... G0S1R0 37129998
    826091 8ia0:LN (2.7) BS01 rna ? GO:0002181 ... G0RZ88 37129998
    826092 8ia0:LN (2.7) BS02 rna ? GO:0002181 ... G0RZ88 37129998
    826093 8ia0:LO (2.7) BS01 rna ? GO:0003729 ... G0SH61 37129998
    826094 8ia0:LP (2.7) BS01 rna ? GO:0002181 ... G0SGY1 37129998
    826095 8ia0:LP (2.7) BS02 rna ? GO:0002181 ... G0SGY1 37129998
    826096 8ia0:LQ (2.7) BS01 rna ? GO:0003723 ... G0S9B5 37129998
    826097 8ia0:LR (2.7) BS01 rna ? GO:0003735 ... G0S9T3 37129998
    826098 8ia0:LS (2.7) BS01 rna ? GO:0003735 ... G0SCE2 37129998
    826099 8ia0:LT (2.7) BS01 rna ? GO:0003735 ... G0S0Z3 37129998
    826100 8ia0:LU (2.7) BS01 rna ? GO:0002181 ... G0SDS8 37129998
    826101 8ia0:LV (2.7) BS01 rna ? GO:0003735 ... G0SI44 37129998
    826102 8ia0:LX (2.7) BS01 rna ? GO:0003735 ... G0S507 37129998
    826103 8ia0:LX (2.7) BS02 rna ? GO:0003735 ... G0S507 37129998
    826104 8ia0:LY (2.7) BS01 rna ? GO:0003723 ... G0RYN9 37129998
    826105 8ia0:LY (2.7) BS02 rna ? GO:0003723 ... G0RYN9 37129998
    826106 8ia0:LZ (2.7) BS01 rna ? GO:0003735 ... G0RZE9 37129998
    826107 8ia0:Lc (2.7) BS01 rna ? GO:0003723 ... G0SEI0 37129998
    826108 8ia0:Ld (2.7) BS01 rna ? GO:0002181 ... G0SD68 37129998
    826109 8ia0:Le (2.7) BS01 rna ? GO:0003735 ... G0S6V4 37129998
    826110 8ia0:Lf (2.7) BS01 rna ? GO:0003735 ... G0SCL3 37129998
    826111 8ia0:Lg (2.7) BS01 rna ? GO:0003735 ... G0SFN0 37129998
    826112 8ia0:Lh (2.7) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    826113 8ia0:Lh (2.7) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    826114 8ia0:Li (2.7) BS01 rna ? GO:0003735 ... G0SBN1 37129998
    826115 8ia0:Lj (2.7) BS01 rna ? GO:0003723 ... G0S101 37129998
    826116 8ia0:Lj (2.7) BS02 rna ? GO:0003723 ... G0S101 37129998
    826117 8ia0:Lj (2.7) BS03 ZN ? GO:0003723 ... G0S101 37129998
    826118 8ia0:Lk (2.7) BS01 rna ? GO:0003735 ... G0SG89 37129998
    826119 8ia0:Ll (2.7) BS01 rna ? GO:0003735 ... Q2H9R2 37129998
    826120 8ia0:Ll (2.7) BS02 rna ? GO:0003735 ... Q2H9R2 37129998
    826121 8ia0:Lp (2.7) BS01 ZN ? GO:0003735 ... G0S6B0 37129998
    826122 8ia0:Lq (2.7) BS01 rna ? GO:0003723 ... G0S4Z9 37129998
    826123 8ia3:A (3.5) BS01 dna ? GO:0046983 ... Q15853 37690682
    826124 8ia3:A (3.5) BS02 dna ? GO:0046983 ... Q15853 37690682
    826125 8ia3:B (3.5) BS01 dna ? GO:0046983 ... Q15853 37690682
    826126 8ia3:B (3.5) BS02 dna ? GO:0046983 ... Q15853 37690682
    826127 8ia3:E (3.5) BS01 dna ? GO:0046983 ... Q15853 37690682
    826128 8ia3:E (3.5) BS02 dna ? GO:0046983 ... Q15853 37690682
    826129 8ia3:F (3.5) BS01 dna ? GO:0046983 ... Q15853 37690682
    826130 8ia3:F (3.5) BS02 dna ? GO:0046983 ... Q15853 37690682
    826131 8ia4:B (2.0) BS01 peptide 3.1.-.- GO:0004519 ... Q73QW4 38627399
    826132 8ia5:A (1.93) BS01 peptide ? GO:0005634 ... O15151 N/A
    826133 8ia5:A (1.93) BS02 NUT ? GO:0005634 ... O15151 N/A
    826134 8ia7:R (3.1) BS01 peptide ? GO:0001696 ... P32239 35672283
    826135 8ia8:A (2.86) BS01 peptide ? GO:0002430 ... Q16581 N/A
    826136 8ia9:A (2.5) BS01 MG ? GO:0008168 ... Q9ALN2 37703985
    826137 8ia9:B (2.5) BS01 MG ? GO:0008168 ... Q9ALN2 37703985
    826138 8iaa:A (2.1) BS01 SAH ? GO:0008168 ... Q9ALN2 37703985
    826139 8iaa:A (2.1) BS02 MG ? GO:0008168 ... Q9ALN2 37703985
    826140 8iaa:B (2.1) BS01 SAH ? GO:0008168 ... Q9ALN2 37703985
    826141 8iaa:B (2.1) BS02 MG ? GO:0008168 ... Q9ALN2 37703985
    826142 8iab:A (2.96) BS01 ATP ? GO:0005247 ... P92941 37573431
    826143 8iab:A (2.96) BS02 PIO ? GO:0005247 ... P92941 37573431
    826144 8iab:A (2.96) BS03 CL ? GO:0005247 ... P92941 37573431
    826145 8iab:A (2.96) BS04 CL ? GO:0005247 ... P92941 37573431
    826146 8iab:A (2.96) BS05 CL ? GO:0005247 ... P92941 37573431
    826147 8iab:A (2.96) BS06 PIO ? GO:0005247 ... P92941 37573431
    826148 8iab:B (2.96) BS01 PIO ? GO:0005247 ... P92941 37573431
    826149 8iab:B (2.96) BS02 ATP ? GO:0005247 ... P92941 37573431
    826150 8iab:B (2.96) BS03 PIO ? GO:0005247 ... P92941 37573431
    826151 8iab:B (2.96) BS04 CL ? GO:0005247 ... P92941 37573431
    826152 8iab:B (2.96) BS05 CL ? GO:0005247 ... P92941 37573431
    826153 8iab:B (2.96) BS06 CL ? GO:0005247 ... P92941 37573431
    826154 8iad:A (3.16) BS01 ATP ? GO:0005247 ... P92941 37573431
    826155 8iad:A (3.16) BS02 PIO ? GO:0005247 ... P92941 37573431
    826156 8iad:A (3.16) BS03 PIO ? GO:0005247 ... P92941 37573431
    826157 8iad:B (3.16) BS01 PIO ? GO:0005247 ... P92941 37573431
    826158 8iad:B (3.16) BS02 ATP ? GO:0005247 ... P92941 37573431
    826159 8iad:B (3.16) BS03 PIO ? GO:0005247 ... P92941 37573431
    826160 8iag:A (1.5) BS01 HEM N/A GO:0004601 ... N/A N/A
    826161 8iag:A (1.5) BS02 MG N/A GO:0004601 ... N/A N/A
    826162 8iag:B (1.5) BS01 HEM N/A GO:0004601 ... N/A N/A
    826163 8iag:B (1.5) BS02 MG N/A GO:0004601 ... N/A N/A
    826164 8iah:A (3.6) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826165 8iah:B (3.6) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826166 8iah:C (3.6) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826167 8iah:D (3.6) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826168 8iah:E (3.6) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826169 8iah:F (3.6) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826170 8iah:G (3.6) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826171 8iah:H (3.6) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826172 8iah:I (3.6) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826173 8iah:J (3.6) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826174 8iah:K (3.6) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826175 8iah:L (3.6) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826176 8iai:A (3.5) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826177 8iai:B (3.5) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826178 8iai:C (3.5) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826179 8iai:D (3.5) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826180 8iai:E (3.5) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826181 8iai:F (3.5) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826182 8iai:G (3.5) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826183 8iai:H (3.5) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826184 8iai:I (3.5) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826185 8iai:J (3.5) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826186 8iai:K (3.5) BS01 ADP 3.6.4.- GO:0000786 ... Q6QAQ1 37044097
    826187 8iaj:A (3.1) BS01 PLP 2.3.1.50 GO:0009058 ... P25045
    Q94IB8
    38285738
    826188 8iaj:B (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    826189 8iaj:B (3.1) BS02 Z1T 2.3.1.50 GO:0004758 ... P40970 38285738
    826190 8iaj:D (3.1) BS01 Z1T ? GO:0003674 ... Q06144 38285738
    826191 8iaj:E (3.1) BS01 PLP 2.3.1.50 GO:0009058 ... P25045
    Q94IB8
    38285738
    826192 8iaj:F (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    826193 8iaj:F (3.1) BS02 Z1T 2.3.1.50 GO:0004758 ... P40970 38285738
    826194 8iaj:H (3.1) BS01 Z1T ? GO:0003674 ... Q06144 38285738
    826195 8iak:A (3.1) BS01 PLP 2.3.1.50 GO:0009058 ... P25045
    Q94IB8
    38285738
    826196 8iak:B (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    826197 8iak:E (3.1) BS01 PLP 2.3.1.50 GO:0009058 ... P25045
    Q94IB8
    38285738
    826198 8iak:F (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    826199 8iam:B (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    826200 8iam:B (3.1) BS02 Z1T 2.3.1.50 GO:0004758 ... P40970 38285738

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).