SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    827201 8ifc:M (2.9) BS03 MG ? GO:0000049 ... P0A7S9 38227611
    827202 8ifc:N (2.9) BS01 rna ? GO:0000028 ... P0AG59 38227611
    827203 8ifc:O (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 38227611
    827204 8ifc:O (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 38227611
    827205 8ifc:P (2.9) BS01 rna ? GO:0000028 ... P0A7T3 38227611
    827206 8ifc:Q (2.9) BS01 rna ? GO:0000028 ... P0AG63 38227611
    827207 8ifc:R (2.9) BS01 rna ? GO:0002181 ... P0A7T7 38227611
    827208 8ifc:S (2.9) BS01 rna ? GO:0000028 ... P0A7U3 38227611
    827209 8ifc:S (2.9) BS02 MG ? GO:0000028 ... P0A7U3 38227611
    827210 8ifc:T (2.9) BS01 rna ? GO:0000028 ... P0A7U7 38227611
    827211 8ifc:U (2.9) BS01 rna ? GO:0000028 ... P68679 38227611
    827212 8ifc:c (2.9) BS01 rna ? GO:0000027 ... P60422 38227611
    827213 8ifc:c (2.9) BS02 MG ? GO:0000027 ... P60422 38227611
    827214 8ifc:d (2.9) BS01 rna ? GO:0000027 ... P60438 38227611
    827215 8ifc:d (2.9) BS02 MG ? GO:0000027 ... P60438 38227611
    827216 8ifc:d (2.9) BS03 MG ? GO:0000027 ... P60438 38227611
    827217 8ifc:e (2.9) BS01 rna ? GO:0001070 ... P60723 38227611
    827218 8ifc:f (2.9) BS01 rna ? GO:0000027 ... P62399 38227611
    827219 8ifc:f (2.9) BS02 rna ? GO:0000027 ... P62399 38227611
    827220 8ifc:f (2.9) BS03 rna ? GO:0000027 ... P62399 38227611
    827221 8ifc:g (2.9) BS01 rna ? GO:0000027 ... P0AG55 38227611
    827222 8ifc:h (2.9) BS01 rna ? GO:0002181 ... P0A7R1 38227611
    827223 8ifc:i (2.9) BS01 rna ? GO:0002181 ... P0AA10 38227611
    827224 8ifc:j (2.9) BS01 rna ? GO:0002181 ... P0ADY3 38227611
    827225 8ifc:j (2.9) BS02 rna ? GO:0002181 ... P0ADY3 38227611
    827226 8ifc:k (2.9) BS01 rna ? GO:0002181 ... P02413 38227611
    827227 8ifc:l (2.9) BS01 rna ? GO:0000027 ... P0ADY7 38227611
    827228 8ifc:l (2.9) BS02 rna ? GO:0000027 ... P0ADY7 38227611
    827229 8ifc:l (2.9) BS03 rna ? GO:0000027 ... P0ADY7 38227611
    827230 8ifc:m (2.9) BS01 rna ? GO:0000027 ... P0AG44 38227611
    827231 8ifc:n (2.9) BS01 rna ? GO:0002181 ... P0C018 38227611
    827232 8ifc:n (2.9) BS02 rna ? GO:0002181 ... P0C018 38227611
    827233 8ifc:o (2.9) BS01 rna ? GO:0000027 ... P0A7K6 38227611
    827234 8ifc:o (2.9) BS02 rna ? GO:0000027 ... P0A7K6 38227611
    827235 8ifc:p (2.9) BS01 rna ? GO:0000027 ... P0A7L3 38227611
    827236 8ifc:q (2.9) BS01 rna ? GO:0002181 ... P0AG48 38227611
    827237 8ifc:r (2.9) BS01 rna ? GO:0002181 ... P61175 38227611
    827238 8ifc:s (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 38227611
    827239 8ifc:t (2.9) BS01 rna ? GO:0000027 ... P60624 38227611
    827240 8ifc:u (2.9) BS01 rna ? GO:0000027 ... P68919 38227611
    827241 8ifc:v (2.9) BS01 rna ? GO:0000027 ... P0A7L8 38227611
    827242 8ifc:v (2.9) BS02 rna ? GO:0000027 ... P0A7L8 38227611
    827243 8ifc:w (2.9) BS01 rna ? GO:0000027 ... P0A7M2 38227611
    827244 8ifc:x (2.9) BS01 rna ? GO:0000027 ... P0A7M6 38227611
    827245 8ifc:y (2.9) BS01 rna ? GO:0000027 ... P0AG51 38227611
    827246 8ifc:z (2.9) BS01 rna ? GO:0000027 ... P0A7N4 38227611
    827247 8ifd:1D (2.59) BS01 rna ? GO:0002181 ... P62917 38227611
    827248 8ifd:1D (2.59) BS02 MG ? GO:0002181 ... P62917 38227611
    827249 8ifd:1E (2.59) BS01 rna ? GO:0002181 ... P39023 38227611
    827250 8ifd:1E (2.59) BS02 MG ? GO:0002181 ... P39023 38227611
    827251 8ifd:1F (2.59) BS01 rna ? GO:0002181 ... P36578 38227611
    827252 8ifd:1F (2.59) BS02 rna ? GO:0002181 ... P36578 38227611
    827253 8ifd:1G (2.59) BS01 rna ? GO:0000027 ... P46777 38227611
    827254 8ifd:1G (2.59) BS02 rna ? GO:0000027 ... P46777 38227611
    827255 8ifd:1H (2.59) BS01 rna ? GO:0002181 ... Q02878 38227611
    827256 8ifd:20 (2.59) BS01 rna ? GO:0000028 ... P39019 38227611
    827257 8ifd:21 (2.59) BS01 rna ? GO:0002181 ... P60866 38227611
    827258 8ifd:2A (2.59) BS01 rna ? GO:0000463 ... P18124 38227611
    827259 8ifd:2A (2.59) BS02 rna ? GO:0000463 ... P18124 38227611
    827260 8ifd:2B (2.59) BS01 rna ? GO:0000470 ... P62424 38227611
    827261 8ifd:2B (2.59) BS02 rna ? GO:0000470 ... P62424 38227611
    827262 8ifd:2C (2.59) BS01 rna ? GO:0002181 ... P32969 38227611
    827263 8ifd:2D (2.59) BS01 rna ? GO:0000027 ... Q96L21 38227611
    827264 8ifd:2D (2.59) BS02 rna ? GO:0000027 ... Q96L21 38227611
    827265 8ifd:2E (2.59) BS01 rna ? GO:0000027 ... P62913 38227611
    827266 8ifd:2E (2.59) BS02 rna ? GO:0000027 ... P62913 38227611
    827267 8ifd:2F (2.59) BS01 rna ? GO:0001824 ... P26373 38227611
    827268 8ifd:2F (2.59) BS02 rna ? GO:0001824 ... P26373 38227611
    827269 8ifd:2G (2.59) BS01 rna ? GO:0002181 ... P50914 38227611
    827270 8ifd:2H (2.59) BS01 rna ? GO:0002181 ... P61313 38227611
    827271 8ifd:2H (2.59) BS02 rna ? GO:0002181 ... P61313 38227611
    827272 8ifd:2I (2.59) BS01 rna ? GO:0002181 ... P40429 38227611
    827273 8ifd:2J (2.59) BS01 rna ? GO:0002181 ... P18621 38227611
    827274 8ifd:2J (2.59) BS02 rna ? GO:0002181 ... P18621 38227611
    827275 8ifd:2K (2.59) BS01 rna ? GO:0002181 ... Q07020 38227611
    827276 8ifd:2L (2.59) BS01 rna ? GO:0002181 ... P84098 38227611
    827277 8ifd:2L (2.59) BS02 rna ? GO:0002181 ... P84098 38227611
    827278 8ifd:2M (2.59) BS01 rna ? GO:0002181 ... Q02543 38227611
    827279 8ifd:2M (2.59) BS02 rna ? GO:0002181 ... Q02543 38227611
    827280 8ifd:2N (2.59) BS01 rna ? GO:0002181 ... P46778 38227611
    827281 8ifd:2N (2.59) BS02 rna ? GO:0002181 ... P46778 38227611
    827282 8ifd:2O (2.59) BS01 rna ? GO:0002181 ... P35268 38227611
    827283 8ifd:2P (2.59) BS01 rna ? GO:0000122 ... P62829 38227611
    827284 8ifd:2P (2.59) BS02 MG ? GO:0000122 ... P62829 38227611
    827285 8ifd:2Q (2.59) BS01 rna ? GO:0000027 ... P83731 38227611
    827286 8ifd:2Q (2.59) BS02 rna ? GO:0000027 ... P83731 38227611
    827287 8ifd:2R (2.59) BS01 rna ? GO:0002181 ... P62750 38227611
    827288 8ifd:2R (2.59) BS02 rna ? GO:0002181 ... P62750 38227611
    827289 8ifd:2S (2.59) BS01 rna ? GO:0002181 ... P61254 38227611
    827290 8ifd:2S (2.59) BS02 rna ? GO:0002181 ... P61254 38227611
    827291 8ifd:2T (2.59) BS01 rna ? GO:0002181 ... P61353 38227611
    827292 8ifd:2U (2.59) BS01 rna ? GO:0002181 ... P46776 38227611
    827293 8ifd:2V (2.59) BS01 rna ? GO:0002181 ... P47914 38227611
    827294 8ifd:2V (2.59) BS02 MG ? GO:0002181 ... P47914 38227611
    827295 8ifd:2W (2.59) BS01 rna ? GO:0002181 ... P62888 38227611
    827296 8ifd:2X (2.59) BS01 rna ? GO:0002181 ... P62899 38227611
    827297 8ifd:2Y (2.59) BS01 rna ? GO:0002181 ... P62910 38227611
    827298 8ifd:2Y (2.59) BS02 MG ? GO:0002181 ... P62910 38227611
    827299 8ifd:2Y (2.59) BS03 MG ? GO:0002181 ... P62910 38227611
    827300 8ifd:2Z (2.59) BS01 rna ? GO:0000049 ... P18077 38227611
    827301 8ifd:2Z (2.59) BS02 MG ? GO:0000049 ... P18077 38227611
    827302 8ifd:2a (2.59) BS01 rna ? GO:0002181 ... P49207 38227611
    827303 8ifd:2a (2.59) BS02 MG ? GO:0002181 ... P49207 38227611
    827304 8ifd:2b (2.59) BS01 rna ? GO:0000463 ... P42766 38227611
    827305 8ifd:2b (2.59) BS02 rna ? GO:0000463 ... P42766 38227611
    827306 8ifd:2c (2.59) BS01 rna ? GO:0002181 ... Q9Y3U8 38227611
    827307 8ifd:2d (2.59) BS01 rna ? GO:0002181 ... P61927 38227611
    827308 8ifd:2d (2.59) BS02 rna ? GO:0002181 ... P61927 38227611
    827309 8ifd:2d (2.59) BS03 MG ? GO:0002181 ... P61927 38227611
    827310 8ifd:2d (2.59) BS04 ZN ? GO:0002181 ... P61927 38227611
    827311 8ifd:2e (2.59) BS01 rna ? GO:0001501 ... P63173 38227611
    827312 8ifd:2f (2.59) BS01 rna ? GO:0002181 ... P62891 38227611
    827313 8ifd:2f (2.59) BS02 rna ? GO:0002181 ... P62891 38227611
    827314 8ifd:2g (2.59) BS01 rna ? GO:0002181 ... P62987 38227611
    827315 8ifd:2g (2.59) BS02 ZN ? GO:0002181 ... P62987 38227611
    827316 8ifd:2i (2.59) BS01 rna ? GO:0002181 ... P83881 38227611
    827317 8ifd:2i (2.59) BS02 84D ? GO:0002181 ... P83881 38227611
    827318 8ifd:2j (2.59) BS01 rna ? GO:0002181 ... P61513 38227611
    827319 8ifd:2j (2.59) BS02 ZN ? GO:0002181 ... P61513 38227611
    827320 8ifd:2k (2.59) BS01 rna ? GO:0002181 ... P46779 38227611
    827321 8ifd:2l (2.59) BS01 rna ? GO:0002181 ... P62906 38227611
    827322 8ifd:2n (2.59) BS01 rna ? GO:0000028 ... P08865 38227611
    827323 8ifd:2o (2.59) BS01 rna ? GO:0002181 ... P61247 38227611
    827324 8ifd:2p (2.59) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38227611
    827325 8ifd:2q (2.59) BS01 rna ? GO:0002181 ... P62701 38227611
    827326 8ifd:2r (2.59) BS01 rna ? GO:0000028 ... P46782 38227611
    827327 8ifd:2s (2.59) BS01 rna ? GO:0001843 ... P62081 38227611
    827328 8ifd:2t (2.59) BS01 rna ? GO:0000462 ... P62241 38227611
    827329 8ifd:2t (2.59) BS02 rna ? GO:0000462 ... P62241 38227611
    827330 8ifd:2u (2.59) BS01 rna ? GO:0002181 ... P46783 38227611
    827331 8ifd:2v (2.59) BS01 rna ? GO:0002181 ... P62280 38227611
    827332 8ifd:2w (2.59) BS01 rna ? GO:0000028 ... P62841 38227611
    827333 8ifd:2x (2.59) BS01 rna ? GO:0000462 ... P62249 38227611
    827334 8ifd:2y (2.59) BS01 rna ? GO:0002181 ... P08708 38227611
    827335 8ifd:2z (2.59) BS01 rna ? GO:0002181 ... P62269 38227611
    827336 8ifd:3B (2.59) BS01 rna ? GO:0002181 ... P62266 38227611
    827337 8ifd:3C (2.59) BS01 rna ? GO:0002181 ... P62854 38227611
    827338 8ifd:3C (2.59) BS02 ZN ? GO:0002181 ... P62854 38227611
    827339 8ifd:3D (2.59) BS01 rna ? GO:0000028 ... P62857 38227611
    827340 8ifd:3E (2.59) BS01 rna ? GO:0002181 ... P62273 38227611
    827341 8ifd:3F (2.59) BS01 rna ? GO:0001891 ... P63244 38227611
    827342 8ifd:3G (2.59) BS01 rna ? GO:0002181 ... P15880 38227611
    827343 8ifd:3H (2.59) BS01 rna ? GO:0000082 ... P62753 38227611
    827344 8ifd:3I (2.59) BS01 rna ? GO:0002181 ... P46781 38227611
    827345 8ifd:3J (2.59) BS01 rna ? GO:0002181 ... P25398 38227611
    827346 8ifd:3K (2.59) BS01 rna ? GO:0002181 ... P62277 38227611
    827347 8ifd:3K (2.59) BS02 rna ? GO:0002181 ... P62277 38227611
    827348 8ifd:3L (2.59) BS01 rna ? GO:0000028 ... P62263 38227611
    827349 8ifd:3M (2.59) BS01 rna ? GO:0002181 ... P62244 38227611
    827350 8ifd:3N (2.59) BS01 rna ? GO:0002181 ... P62847 38227611
    827351 8ifd:3O (2.59) BS01 rna ? GO:0002181 ... P62851 38227611
    827352 8ifd:3P (2.59) BS01 rna ? GO:0000028 ... P42677 38227611
    827353 8ifd:3Q (2.59) BS01 rna ? GO:0003735 ... P62861 38227611
    827354 8ifd:3R (2.59) BS01 rna ? GO:0002181 ... P62979 38227611
    827355 8ife:1D (2.57) BS01 rna ? GO:0002181 ... P62917 38227611
    827356 8ife:1D (2.57) BS02 MG ? GO:0002181 ... P62917 38227611
    827357 8ife:1E (2.57) BS01 rna ? GO:0002181 ... P39023 38227611
    827358 8ife:1E (2.57) BS02 MG ? GO:0002181 ... P39023 38227611
    827359 8ife:1F (2.57) BS01 rna ? GO:0002181 ... P36578 38227611
    827360 8ife:1F (2.57) BS02 rna ? GO:0002181 ... P36578 38227611
    827361 8ife:1G (2.57) BS01 rna ? GO:0000027 ... P46777 38227611
    827362 8ife:1G (2.57) BS02 rna ? GO:0000027 ... P46777 38227611
    827363 8ife:1H (2.57) BS01 rna ? GO:0002181 ... Q02878 38227611
    827364 8ife:20 (2.57) BS01 rna ? GO:0000028 ... P39019 38227611
    827365 8ife:21 (2.57) BS01 rna ? GO:0002181 ... P60866 38227611
    827366 8ife:2A (2.57) BS01 rna ? GO:0000463 ... P18124 38227611
    827367 8ife:2A (2.57) BS02 rna ? GO:0000463 ... P18124 38227611
    827368 8ife:2B (2.57) BS01 rna ? GO:0000470 ... P62424 38227611
    827369 8ife:2B (2.57) BS02 rna ? GO:0000470 ... P62424 38227611
    827370 8ife:2C (2.57) BS01 rna ? GO:0002181 ... P32969 38227611
    827371 8ife:2D (2.57) BS01 rna ? GO:0000027 ... Q96L21 38227611
    827372 8ife:2D (2.57) BS02 rna ? GO:0000027 ... Q96L21 38227611
    827373 8ife:2D (2.57) BS03 84G ? GO:0000027 ... Q96L21 38227611
    827374 8ife:2E (2.57) BS01 rna ? GO:0000027 ... P62913 38227611
    827375 8ife:2E (2.57) BS02 rna ? GO:0000027 ... P62913 38227611
    827376 8ife:2F (2.57) BS01 rna ? GO:0001824 ... P26373 38227611
    827377 8ife:2F (2.57) BS02 rna ? GO:0001824 ... P26373 38227611
    827378 8ife:2G (2.57) BS01 rna ? GO:0002181 ... P50914 38227611
    827379 8ife:2H (2.57) BS01 rna ? GO:0002181 ... P61313 38227611
    827380 8ife:2H (2.57) BS02 rna ? GO:0002181 ... P61313 38227611
    827381 8ife:2I (2.57) BS01 rna ? GO:0002181 ... P40429 38227611
    827382 8ife:2J (2.57) BS01 rna ? GO:0002181 ... P18621 38227611
    827383 8ife:2J (2.57) BS02 rna ? GO:0002181 ... P18621 38227611
    827384 8ife:2K (2.57) BS01 rna ? GO:0002181 ... Q07020 38227611
    827385 8ife:2L (2.57) BS01 rna ? GO:0002181 ... P84098 38227611
    827386 8ife:2L (2.57) BS02 rna ? GO:0002181 ... P84098 38227611
    827387 8ife:2M (2.57) BS01 rna ? GO:0002181 ... Q02543 38227611
    827388 8ife:2M (2.57) BS02 rna ? GO:0002181 ... Q02543 38227611
    827389 8ife:2M (2.57) BS03 MG ? GO:0002181 ... Q02543 38227611
    827390 8ife:2N (2.57) BS01 rna ? GO:0002181 ... P46778 38227611
    827391 8ife:2N (2.57) BS02 rna ? GO:0002181 ... P46778 38227611
    827392 8ife:2O (2.57) BS01 rna ? GO:0002181 ... P35268 38227611
    827393 8ife:2P (2.57) BS01 rna ? GO:0000122 ... P62829 38227611
    827394 8ife:2P (2.57) BS02 MG ? GO:0000122 ... P62829 38227611
    827395 8ife:2Q (2.57) BS01 rna ? GO:0000027 ... P83731 38227611
    827396 8ife:2Q (2.57) BS02 rna ? GO:0000027 ... P83731 38227611
    827397 8ife:2R (2.57) BS01 rna ? GO:0002181 ... P62750 38227611
    827398 8ife:2R (2.57) BS02 rna ? GO:0002181 ... P62750 38227611
    827399 8ife:2S (2.57) BS01 rna ? GO:0002181 ... P61254 38227611
    827400 8ife:2S (2.57) BS02 rna ? GO:0002181 ... P61254 38227611

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).