SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    827801 8iht:G (3.72) BS02 dna ? GO:0000786 ... P06897 37845487
    827802 8iht:H (3.72) BS01 dna ? GO:0000786 ... P02281 37845487
    827803 8iht:K (3.72) BS01 dna ? GO:0000086 ... P22579 37845487
    827804 8iht:K (3.72) BS02 dna ? GO:0000086 ... P22579 37845487
    827805 8iht:L (3.72) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 37845487
    827806 8iht:L (3.72) BS02 CA 3.5.1.98 GO:0000082 ... P32561 37845487
    827807 8iht:N (3.72) BS01 dna ? GO:0000122 ... Q12432 37845487
    827808 8ihw:A (1.7) BS01 MG 3.2.1.4 GO:0004553 ... I2FI81 N/A
    827809 8ihw:A (1.7) BS02 CA 3.2.1.4 GO:0004553 ... I2FI81 N/A
    827810 8ihx:A (1.6) BS01 MG 3.2.1.4 GO:0004553 ... I2FI81 N/A
    827811 8ihx:A (1.6) BS02 CA 3.2.1.4 GO:0004553 ... I2FI81 N/A
    827812 8ihy:A (1.6) BS01 MG 3.2.1.4 GO:0004553 ... I2FI81 N/A
    827813 8ihy:A (1.6) BS02 CA 3.2.1.4 GO:0004553 ... I2FI81 N/A
    827814 8ihz:A (2.22) BS01 ZN 1.14.11.30
    1.14.11.n4
    GO:0003714 ... Q9NWT6 38923188
    827815 8ihz:A (2.22) BS02 P1X 1.14.11.30
    1.14.11.n4
    GO:0003714 ... Q9NWT6 38923188
    827816 8ii0:A (2.04) BS01 P5I 1.14.11.30
    1.14.11.n4
    GO:0003714 ... Q9NWT6 38923188
    827817 8ii0:A (2.04) BS02 ZN 1.14.11.30
    1.14.11.n4
    GO:0003714 ... Q9NWT6 38923188
    827818 8ii1:A (1.907) BS01 PJO ? N/A P02766 37311373
    827819 8ii1:B (1.907) BS01 PJO ? N/A P02766 37311373
    827820 8ii2:A (1.798) BS01 R75 ? N/A P02766 37311373
    827821 8ii2:B (1.798) BS01 CA ? N/A P02766 37311373
    827822 8ii2:B (1.798) BS02 R75 ? N/A P02766 37311373
    827823 8ii3:A (1.399) BS01 PKK ? N/A P02766 37311373
    827824 8ii3:B (1.399) BS01 PKK ? N/A P02766 37311373
    827825 8ii4:A (1.499) BS01 PKQ ? N/A P02766 37311373
    827826 8ii4:B (1.499) BS01 PKQ ? N/A P02766 37311373
    827827 8ii8:A (1.25) BS01 PW6 N/A N/A A0A2Z5U5S2 39073883
    827828 8iib:A (2.69) BS01 MG ? GO:0003723 ... A0A386NBK9 37156298
    827829 8iib:B (2.69) BS01 MG ? GO:0003723 ... A0A386NBK9 37156298
    827830 8iie:A (1.67) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827831 8iie:A (1.67) BS02 URA 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827832 8iif:A (1.65) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827833 8iig:A (2.3) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827834 8iig:A (2.3) BS02 URA 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827835 8iih:A (2.13) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827836 8iii:A (1.72) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827837 8iii:A (1.72) BS02 URA 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827838 8iij:A (1.83) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827839 8iil:A (2.3) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827840 8iil:A (2.3) BS02 URA 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827841 8iim:A (1.6) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827842 8iin:A (1.61) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827843 8iin:A (1.61) BS02 URA 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827844 8iio:A (1.67) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827845 8iip:A (1.63) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827846 8iip:A (1.63) BS02 URA 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827847 8iiq:A (2.1) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827848 8iir:A (2.28) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827849 8iis:A (1.61) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827850 8iit:A (1.61) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827851 8iit:A (1.61) BS02 URA 3.2.2.27 GO:0004844 ... A0QP43 37283083
    827852 8iiy:A (2.15) BS01 peptide ? GO:0005515 ... O95619
    P0AEX9
    37844223
    827853 8iiy:A (2.15) BS02 peptide ? GO:0005515 ... O95619
    P0AEX9
    37844223
    827854 8iiy:A (2.15) BS03 GLC ? GO:0005515 ... O95619
    P0AEX9
    37844223
    827855 8iiy:A (2.15) BS04 GLC ? GO:0005515 ... O95619
    P0AEX9
    37844223
    827856 8iiy:A (2.15) BS05 GLC ? GO:0005515 ... O95619
    P0AEX9
    37844223
    827857 8iiy:A (2.15) BS06 GLC ? GO:0005515 ... O95619
    P0AEX9
    37844223
    827858 8iiz:A (2.1) BS01 peptide ? GO:0005515 ... O95619
    P0AEX9
    37844223
    827859 8iiz:A (2.1) BS02 peptide ? GO:0005515 ... O95619
    P0AEX9
    37844223
    827860 8iiz:A (2.1) BS03 GLC ? GO:0005515 ... O95619
    P0AEX9
    37844223
    827861 8iiz:A (2.1) BS04 GLC ? GO:0005515 ... O95619
    P0AEX9
    37844223
    827862 8ij0:A (1.52) BS01 peptide ? GO:0006355 ... O95619 37844223
    827863 8ij0:A (1.52) BS02 peptide ? GO:0006355 ... O95619 37844223
    827864 8ij0:B (1.52) BS01 peptide ? GO:0006355 ... O95619 37844223
    827865 8ij0:B (1.52) BS02 peptide ? GO:0006355 ... O95619 37844223
    827866 8ij1:D (4.2) BS01 ZN ? GO:0000151 ... Q9UK73 38360992
    827867 8ij1:I (4.2) BS01 ZN ? GO:0000151 ... Q9UK73 38360992
    827868 8ij1:R (4.2) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38360992
    827869 8ij1:R (4.2) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38360992
    827870 8ij1:R (4.2) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38360992
    827871 8ij6:A (2.28) BS01 NAP ? GO:0000166 ... F2LIG4 N/A
    827872 8ij6:B (2.28) BS01 NAP ? GO:0000166 ... F2LIG4 N/A
    827873 8ij6:C (2.28) BS01 NAP ? GO:0000166 ... F2LIG4 N/A
    827874 8ij6:D (2.28) BS01 NAP ? GO:0000166 ... F2LIG4 N/A
    827875 8ij9:A (2.04) BS01 GTP 3.6.5.2 GO:0003924 ... P61294 37172719
    827876 8ij9:A (2.04) BS02 MG 3.6.5.2 GO:0003924 ... P61294 37172719
    827877 8ij9:B (2.04) BS01 GTP 3.6.5.2 GO:0003924 ... P61294 37172719
    827878 8ij9:B (2.04) BS02 MG 3.6.5.2 GO:0003924 ... P61294 37172719
    827879 8ija:A (2.69) BS01 NIO ? GO:0004930 ... Q8TDS4 38012147
    827880 8ijb:A (3.23) BS01 OJX ? GO:0004930 ... Q8TDS4 38012147
    827881 8ijd:A (3.25) BS01 FI7 ? GO:0004930 ... Q8TDS4 38012147
    827882 8ijg:A (2.27) BS01 NAP ? GO:0000166 ... F2LIG4 N/A
    827883 8ijg:B (2.27) BS01 NAP ? GO:0000166 ... F2LIG4 N/A
    827884 8ijg:C (2.27) BS01 NAP ? GO:0000166 ... F2LIG4 N/A
    827885 8ijg:D (2.27) BS01 NAP ? GO:0000166 ... F2LIG4 N/A
    827886 8ijk:A (3.4) BS01 7PN ? GO:0005216 ... O43526 38167918
    827887 8ijk:A (3.4) BS02 7PN ? GO:0005216 ... O43526 38167918
    827888 8ijk:B (3.4) BS01 7PN ? GO:0005216 ... O43526 38167918
    827889 8ijk:B (3.4) BS02 7PN ? GO:0005216 ... O43526 38167918
    827890 8ijk:C (3.4) BS01 7PN ? GO:0005216 ... O43526 38167918
    827891 8ijk:C (3.4) BS02 7PN ? GO:0005216 ... O43526 38167918
    827892 8ijk:D (3.4) BS01 7PN ? GO:0005216 ... O43526 38167918
    827893 8ijk:D (3.4) BS02 7PN ? GO:0005216 ... O43526 38167918
    827894 8ijl:A (2.62) BS01 ALF 7.2.2.13
    7.2.2.19
    GO:0000166 ... P54708 37482134
    827895 8ijl:A (2.62) BS02 MG 7.2.2.13
    7.2.2.19
    GO:0000166 ... P54708 37482134
    827896 8ijl:A (2.62) BS03 ADP 7.2.2.13
    7.2.2.19
    GO:0000166 ... P54708 37482134
    827897 8ijl:A (2.62) BS04 CLR 7.2.2.13
    7.2.2.19
    GO:0000166 ... P54708 37482134
    827898 8ijl:A (2.62) BS05 Q7G 7.2.2.13
    7.2.2.19
    GO:0000166 ... P54708 37482134
    827899 8ijl:A (2.62) BS06 Q7G 7.2.2.13
    7.2.2.19
    GO:0000166 ... P54708 37482134
    827900 8ijl:B (2.62) BS01 CLR ? GO:0001666 ... P07340 37482134
    827901 8ijl:B (2.62) BS02 Q7G ? GO:0001666 ... P07340 37482134
    827902 8ijm:A (3.13) BS01 ACP 7.2.2.13
    7.2.2.19
    GO:0000166 ... P54708 37482134
    827903 8ijm:B (3.13) BS01 CLR ? GO:0001666 ... P07340 37482134
    827904 8ijn:A (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    827905 8ijn:A (1.8) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    827906 8ijn:A (1.8) BS03 NO 7.1.1.9 GO:0004129 ... P00396 20385840
    827907 8ijn:A (1.8) BS04 CU 7.1.1.9 GO:0004129 ... P00396 20385840
    827908 8ijn:A (1.8) BS05 MG 7.1.1.9 GO:0004129 ... P00396 20385840
    827909 8ijn:B (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 20385840
    827910 8ijn:B (1.8) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 20385840
    827911 8ijn:C (1.8) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    827912 8ijn:F (1.8) BS01 ZN ? GO:0005740 ... P00428 20385840
    827913 8ijn:M (1.8) BS01 DMU ? GO:0006123 ... P10175 20385840
    827914 8ijn:N (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    827915 8ijn:N (1.8) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    827916 8ijn:N (1.8) BS03 NO 7.1.1.9 GO:0004129 ... P00396 20385840
    827917 8ijn:N (1.8) BS04 CU 7.1.1.9 GO:0004129 ... P00396 20385840
    827918 8ijn:N (1.8) BS05 MG 7.1.1.9 GO:0004129 ... P00396 20385840
    827919 8ijn:O (1.8) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 20385840
    827920 8ijn:O (1.8) BS02 DMU 7.1.1.9 GO:0004129 ... P68530 20385840
    827921 8ijn:P (1.8) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    827922 8ijn:P (1.8) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    827923 8ijn:S (1.8) BS01 ZN ? GO:0005740 ... P00428 20385840
    827924 8ijn:T (1.8) BS01 DMU ? GO:0005743 ... P07471 20385840
    827925 8ijn:W (1.8) BS01 DMU ? GO:0006123 ... P07470 20385840
    827926 8ijn:Z (1.8) BS01 DMU ? GO:0006123 ... P10175 20385840
    827927 8ijo:A (1.65) BS01 dna 3.1.21.- N/A P15005 N/A
    827928 8ijo:A (1.65) BS02 dna 3.1.21.- N/A P15005 N/A
    827929 8ijo:B (1.65) BS01 dna 3.1.21.- N/A P15005 N/A
    827930 8ijo:B (1.65) BS02 dna 3.1.21.- N/A P15005 N/A
    827931 8ijp:A (1.55) BS01 dna 3.1.21.- N/A P15005 N/A
    827932 8ijp:A (1.55) BS02 dna 3.1.21.- N/A P15005 N/A
    827933 8ijp:B (1.55) BS01 dna 3.1.21.- N/A P15005 N/A
    827934 8ijp:B (1.55) BS02 dna 3.1.21.- N/A P15005 N/A
    827935 8ijq:A (3.45) BS01 16C 2.7.8.- GO:0016780 ... Q96LT4 38388831
    827936 8ijq:B (3.45) BS01 16C 2.7.8.- GO:0016780 ... Q96LT4 38388831
    827937 8ijq:C (3.45) BS01 16C 2.7.8.- GO:0016780 ... Q96LT4 38388831
    827938 8ijq:D (3.45) BS01 16C 2.7.8.- GO:0016780 ... Q96LT4 38388831
    827939 8ijq:E (3.45) BS01 16C 2.7.8.- GO:0016780 ... Q96LT4 38388831
    827940 8ijq:F (3.45) BS01 16C 2.7.8.- GO:0016780 ... Q96LT4 38388831
    827941 8ijr:A (3.29) BS01 Z0P 2.7.8.- GO:0000139 ... Q96LT4 38388831
    827942 8ijr:A (3.29) BS02 OPE 2.7.8.- GO:0000139 ... Q96LT4 38388831
    827943 8ijr:B (3.29) BS01 Z0P 2.7.8.- GO:0000139 ... Q96LT4 38388831
    827944 8ijr:B (3.29) BS02 OPE 2.7.8.- GO:0000139 ... Q96LT4 38388831
    827945 8ijr:C (3.29) BS01 Z0P 2.7.8.- GO:0000139 ... Q96LT4 38388831
    827946 8ijr:D (3.29) BS01 Z0P 2.7.8.- GO:0000139 ... Q96LT4 38388831
    827947 8ijr:E (3.29) BS01 Z0P 2.7.8.- GO:0000139 ... Q96LT4 38388831
    827948 8ijr:F (3.29) BS01 Z0P 2.7.8.- GO:0000139 ... Q96LT4 38388831
    827949 8ijv:A (2.1) BS01 MG 7.2.2.19 GO:0000166 ... P19156 37726448
    827950 8ijv:A (2.1) BS02 PWI 7.2.2.19 GO:0000166 ... P19156 37726448
    827951 8ijv:B (2.1) BS01 CLR ? GO:0001671 ... P18434 37726448
    827952 8ijv:B (2.1) BS02 CLR ? GO:0001671 ... P18434 37726448
    827953 8ijw:A (2.19) BS01 MG 7.2.2.19 GO:0000166 ... P19156 37726448
    827954 8ijw:A (2.19) BS02 PXR 7.2.2.19 GO:0000166 ... P19156 37726448
    827955 8ijw:B (2.19) BS01 CLR ? GO:0001671 ... P18434 37726448
    827956 8ijw:B (2.19) BS02 CLR ? GO:0001671 ... P18434 37726448
    827957 8ijx:A (2.08) BS01 MG 7.2.2.19 GO:0000166 ... P19156 37726448
    827958 8ijx:A (2.08) BS02 PZ0 7.2.2.19 GO:0000166 ... P19156 37726448
    827959 8ijx:B (2.08) BS01 CLR ? GO:0001671 ... P18434 37726448
    827960 8ijy:A (2.38) BS01 SF4 N/A GO:0000166 ... Q31P18 N/A
    827961 8ijy:A (2.38) BS02 HDF N/A GO:0000166 ... Q31P18 N/A
    827962 8ijy:A (2.38) BS03 FAD N/A GO:0000166 ... Q31P18 N/A
    827963 8ik2:A (2.151) BS01 5UF 2.3.1.- GO:0006629 ... Q51559 N/A
    827964 8ik3:A (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4
    37086726
    827965 8ik3:C (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4
    37086726
    827966 8ik3:E (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4
    37086726
    827967 8ik3:F (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4
    37086726
    827968 8ik3:G (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4
    37086726
    827969 8ik3:H (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4
    37086726
    827970 8ik4:A (2.1) BS01 dna 3.1.21.- N/A P15005 N/A
    827971 8ik4:A (2.1) BS02 dna 3.1.21.- N/A P15005 N/A
    827972 8ik4:B (2.1) BS01 dna 3.1.21.- N/A P15005 N/A
    827973 8ik4:B (2.1) BS02 dna 3.1.21.- N/A P15005 N/A
    827974 8ik5:C (1.989) BS01 dna ? GO:0000981 ... Q8TE12 N/A
    827975 8ik5:C (1.989) BS02 dna ? GO:0000981 ... Q8TE12 N/A
    827976 8ik6:A (3.3) BS01 ZN N/A GO:0004842 ... O60260 39221915
    827977 8ik6:A (3.3) BS02 ZN N/A GO:0004842 ... O60260 39221915
    827978 8ik6:A (3.3) BS03 ZN N/A GO:0004842 ... O60260 39221915
    827979 8ik6:A (3.3) BS04 ZN N/A GO:0004842 ... O60260 39221915
    827980 8ik6:A (3.3) BS05 ZN N/A GO:0004842 ... O60260 39221915
    827981 8ik6:A (3.3) BS06 ZN N/A GO:0004842 ... O60260 39221915
    827982 8ik6:C (3.3) BS01 ZN N/A GO:0004842 ... O60260 39221915
    827983 8ik6:C (3.3) BS02 ZN N/A GO:0004842 ... O60260 39221915
    827984 8ik6:C (3.3) BS03 ZN N/A GO:0004842 ... O60260 39221915
    827985 8ik6:C (3.3) BS04 ZN N/A GO:0004842 ... O60260 39221915
    827986 8ik6:C (3.3) BS05 ZN N/A GO:0004842 ... O60260 39221915
    827987 8ik6:C (3.3) BS06 ZN N/A GO:0004842 ... O60260 39221915
    827988 8ik6:C (3.3) BS07 ZN N/A GO:0004842 ... O60260 39221915
    827989 8ik6:C (3.3) BS08 ZN N/A GO:0004842 ... O60260 39221915
    827990 8ik8:A (1.8) BS01 dna 3.1.21.- N/A P15005 N/A
    827991 8ik8:A (1.8) BS02 dna 3.1.21.- N/A P15005 N/A
    827992 8ik8:B (1.8) BS01 dna 3.1.21.- N/A P15005 N/A
    827993 8ik8:B (1.8) BS02 dna 3.1.21.- N/A P15005 N/A
    827994 8ikd:A (2.1) BS01 dna 3.1.21.- N/A P15005 N/A
    827995 8ikd:A (2.1) BS02 dna 3.1.21.- N/A P15005 N/A
    827996 8ikd:B (2.1) BS01 dna 3.1.21.- N/A P15005 N/A
    827997 8ikd:B (2.1) BS02 dna 3.1.21.- N/A P15005 N/A
    827998 8ike:C (2.6) BS01 dna ? GO:0000981 ... Q8TE12 N/A
    827999 8ike:C (2.6) BS02 dna ? GO:0000981 ... Q8TE12 N/A
    828000 8ikg:R (3.4) BS01 Q2B ? GO:0004930 ... P21554 38830102

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).