SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    828001 8i0p:C (3.4) BS02 MG N/A GO:0000244 ... Q15029 39068178
    828002 8i0p:E (3.4) BS01 rna N/A GO:0000244 ... Q96DI7 39068178
    828003 8i0p:K (3.4) BS01 rna N/A GO:0000398 ... O60870 39068178
    828004 8i0p:K (3.4) BS02 rna N/A GO:0000398 ... O60870 39068178
    828005 8i0p:K (3.4) BS03 ZN N/A GO:0000398 ... O60870 39068178
    828006 8i0p:L (3.4) BS01 rna N/A GO:0000077 ... Q99459 39068178
    828007 8i0p:N (3.4) BS01 rna N/A GO:0000398 ... P41223 39068178
    828008 8i0p:O (3.4) BS01 rna N/A GO:0000398 ... Q9NW64 39068178
    828009 8i0p:O (3.4) BS02 rna N/A GO:0000398 ... Q9NW64 39068178
    828010 8i0p:T (3.4) BS01 rna N/A GO:0000398 ... O43660 39068178
    828011 8i0p:Y (3.4) BS01 rna N/A GO:0000398 ... Q9Y388 39068178
    828012 8i0p:a (3.4) BS01 rna N/A GO:0000244 ... P14678 39068178
    828013 8i0p:b (3.4) BS01 rna N/A GO:0000243 ... P62314 39068178
    828014 8i0p:c (3.4) BS01 rna N/A GO:0000244 ... P62316 39068178
    828015 8i0p:d (3.4) BS01 rna N/A GO:0000244 ... P62306 39068178
    828016 8i0p:e (3.4) BS01 rna N/A GO:0000244 ... P62304 39068178
    828017 8i0p:g (3.4) BS01 rna N/A GO:0000243 ... P62318 39068178
    828018 8i0p:h (3.4) BS01 rna N/A GO:0000244 ... P62316 39068178
    828019 8i0p:j (3.4) BS01 rna N/A GO:0000244 ... P62304 39068178
    828020 8i0p:k (3.4) BS01 rna N/A GO:0000244 ... P62308 39068178
    828021 8i0p:l (3.4) BS01 rna N/A GO:0000243 ... P62318 39068178
    828022 8i0p:m (3.4) BS01 rna N/A GO:0000244 ... P14678 39068178
    828023 8i0p:n (3.4) BS01 rna N/A GO:0000243 ... P62314 39068178
    828024 8i0p:o (3.4) BS01 rna N/A GO:0000387 ... P09661 39068178
    828025 8i0p:p (3.4) BS01 rna N/A GO:0000387 ... P08579 39068178
    828026 8i0p:v (3.4) BS01 rna N/A GO:0000245 ... Q15428 39068178
    828027 8i0p:w (3.4) BS01 rna N/A GO:0000375 ... Q12874 39068178
    828028 8i0p:w (3.4) BS02 rna N/A GO:0000375 ... Q12874 39068178
    828029 8i0q:A (4.45) BS01 peptide ? GO:0001664 ... P29066 37209686
    828030 8i0q:B (4.45) BS01 peptide ? GO:0001664 ... P29066 37209686
    828031 8i0q:L (4.45) BS01 peptide N/A N/A N/A 37209686
    828032 8i0q:M (4.45) BS01 peptide N/A N/A N/A 37209686
    828033 8i0r:1 (3.0) BS01 rna N/A GO:0000245 ... O75533 39068178
    828034 8i0r:1 (3.0) BS02 rna N/A GO:0000245 ... O75533 39068178
    828035 8i0r:2 (3.0) BS01 rna N/A GO:0000387 ... Q13435 39068178
    828036 8i0r:2 (3.0) BS02 rna N/A GO:0000387 ... Q13435 39068178
    828037 8i0r:7 (3.0) BS01 rna N/A GO:0000387 ... Q7RTV0 39068178
    828038 8i0r:7 (3.0) BS02 ZN N/A GO:0000387 ... Q7RTV0 39068178
    828039 8i0r:7 (3.0) BS03 ZN N/A GO:0000387 ... Q7RTV0 39068178
    828040 8i0r:7 (3.0) BS04 ZN N/A GO:0000387 ... Q7RTV0 39068178
    828041 8i0r:A (3.0) BS01 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828042 8i0r:A (3.0) BS02 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828043 8i0r:A (3.0) BS03 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828044 8i0r:A (3.0) BS04 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828045 8i0r:A (3.0) BS05 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    828046 8i0r:C (3.0) BS01 rna N/A GO:0000244 ... Q15029 39068178
    828047 8i0r:C (3.0) BS02 GTP N/A GO:0000244 ... Q15029 39068178
    828048 8i0r:J (3.0) BS01 rna N/A GO:0000245 ... Q9BZJ0 39068178
    828049 8i0r:J (3.0) BS02 rna N/A GO:0000245 ... Q9BZJ0 39068178
    828050 8i0r:K (3.0) BS01 rna N/A GO:0000398 ... O15541 39068178
    828051 8i0r:K (3.0) BS02 ZN N/A GO:0000398 ... O15541 39068178
    828052 8i0r:L (3.0) BS01 rna N/A GO:0000077 ... Q99459 39068178
    828053 8i0r:N (3.0) BS01 rna N/A GO:0000398 ... P41223 39068178
    828054 8i0r:N (3.0) BS02 ZN N/A GO:0000398 ... P41223 39068178
    828055 8i0r:N (3.0) BS03 ZN N/A GO:0000398 ... P41223 39068178
    828056 8i0r:N (3.0) BS04 ZN N/A GO:0000398 ... P41223 39068178
    828057 8i0r:O (3.0) BS01 rna N/A GO:0000398 ... Q9NW64 39068178
    828058 8i0r:O (3.0) BS02 rna N/A GO:0000398 ... Q9NW64 39068178
    828059 8i0r:T (3.0) BS01 rna N/A GO:0000398 ... O43660 39068178
    828060 8i0r:U (3.0) BS01 rna N/A GO:0000398 ... Q9UQ35 39068178
    828061 8i0r:Y (3.0) BS01 rna N/A GO:0000398 ... Q9Y388 39068178
    828062 8i0r:a (3.0) BS01 rna N/A GO:0000244 ... P14678 39068178
    828063 8i0r:b (3.0) BS01 rna N/A GO:0000243 ... P62314 39068178
    828064 8i0r:c (3.0) BS01 rna N/A GO:0000244 ... P62316 39068178
    828065 8i0r:d (3.0) BS01 rna N/A GO:0000244 ... P62306 39068178
    828066 8i0r:e (3.0) BS01 rna N/A GO:0000244 ... P62304 39068178
    828067 8i0r:g (3.0) BS01 rna N/A GO:0000243 ... P62318 39068178
    828068 8i0r:h (3.0) BS01 rna N/A GO:0000244 ... P62316 39068178
    828069 8i0r:j (3.0) BS01 rna N/A GO:0000244 ... P62304 39068178
    828070 8i0r:k (3.0) BS01 rna N/A GO:0000244 ... P62308 39068178
    828071 8i0r:l (3.0) BS01 rna N/A GO:0000243 ... P62318 39068178
    828072 8i0r:m (3.0) BS01 rna N/A GO:0000244 ... P14678 39068178
    828073 8i0r:n (3.0) BS01 rna N/A GO:0000243 ... P62314 39068178
    828074 8i0r:o (3.0) BS01 rna N/A GO:0000387 ... P09661 39068178
    828075 8i0r:p (3.0) BS01 rna N/A GO:0000387 ... P08579 39068178
    828076 8i0r:v (3.0) BS01 rna N/A GO:0000245 ... Q15428 39068178
    828077 8i0r:v (3.0) BS02 rna N/A GO:0000245 ... Q15428 39068178
    828078 8i0r:v (3.0) BS03 rna N/A GO:0000245 ... Q15428 39068178
    828079 8i0r:w (3.0) BS01 rna N/A GO:0000375 ... Q12874 39068178
    828080 8i0r:w (3.0) BS02 rna N/A GO:0000375 ... Q12874 39068178
    828081 8i0s:1 (4.2) BS01 rna N/A GO:0000245 ... O75533 39068178
    828082 8i0s:1 (4.2) BS02 rna N/A GO:0000245 ... O75533 39068178
    828083 8i0s:2 (4.2) BS01 rna N/A GO:0000387 ... Q13435 39068178
    828084 8i0s:7 (4.2) BS01 ZN N/A GO:0000387 ... Q7RTV0 39068178
    828085 8i0s:7 (4.2) BS02 ZN N/A GO:0000387 ... Q7RTV0 39068178
    828086 8i0s:7 (4.2) BS03 ZN N/A GO:0000387 ... Q7RTV0 39068178
    828087 8i0s:A (4.2) BS01 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828088 8i0s:A (4.2) BS02 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828089 8i0s:A (4.2) BS03 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828090 8i0s:A (4.2) BS04 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828091 8i0s:A (4.2) BS05 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    828092 8i0s:C (4.2) BS01 rna N/A GO:0000244 ... Q15029 39068178
    828093 8i0s:C (4.2) BS02 GTP N/A GO:0000244 ... Q15029 39068178
    828094 8i0s:C (4.2) BS03 MG N/A GO:0000244 ... Q15029 39068178
    828095 8i0s:J (4.2) BS01 rna N/A GO:0000245 ... Q9BZJ0 39068178
    828096 8i0s:K (4.2) BS01 rna N/A GO:0000398 ... O15541 39068178
    828097 8i0s:K (4.2) BS02 ZN N/A GO:0000398 ... O15541 39068178
    828098 8i0s:L (4.2) BS01 rna N/A GO:0000077 ... Q99459 39068178
    828099 8i0s:N (4.2) BS01 rna N/A GO:0000398 ... P41223 39068178
    828100 8i0s:N (4.2) BS02 ZN N/A GO:0000398 ... P41223 39068178
    828101 8i0s:N (4.2) BS03 ZN N/A GO:0000398 ... P41223 39068178
    828102 8i0s:O (4.2) BS01 rna N/A GO:0000398 ... Q9NW64 39068178
    828103 8i0s:O (4.2) BS02 rna N/A GO:0000398 ... Q9NW64 39068178
    828104 8i0s:P (4.2) BS01 rna N/A GO:0000398 ... Q9P013 39068178
    828105 8i0s:R (4.2) BS01 rna N/A GO:0000122 ... Q13573 39068178
    828106 8i0s:R (4.2) BS02 rna N/A GO:0000122 ... Q13573 39068178
    828107 8i0s:U (4.2) BS01 rna N/A GO:0000398 ... Q9UQ35 39068178
    828108 8i0s:X (4.2) BS01 rna N/A GO:0000398 ... O60231 39068178
    828109 8i0s:Y (4.2) BS01 rna N/A GO:0000398 ... Q8WUA2 39068178
    828110 8i0s:b (4.2) BS01 rna N/A GO:0000243 ... P62314 39068178
    828111 8i0s:c (4.2) BS01 rna N/A GO:0000244 ... P62316 39068178
    828112 8i0s:d (4.2) BS01 rna N/A GO:0000244 ... P62306 39068178
    828113 8i0s:e (4.2) BS01 rna N/A GO:0000244 ... P62304 39068178
    828114 8i0s:f (4.2) BS01 rna N/A GO:0000244 ... P62308 39068178
    828115 8i0s:g (4.2) BS01 rna N/A GO:0000243 ... P62318 39068178
    828116 8i0s:h (4.2) BS01 rna N/A GO:0000244 ... P62316 39068178
    828117 8i0s:i (4.2) BS01 rna N/A GO:0000244 ... P62306 39068178
    828118 8i0s:j (4.2) BS01 rna N/A GO:0000244 ... P62304 39068178
    828119 8i0s:k (4.2) BS01 rna N/A GO:0000244 ... P62308 39068178
    828120 8i0s:l (4.2) BS01 rna N/A GO:0000243 ... P62318 39068178
    828121 8i0s:m (4.2) BS01 rna N/A GO:0000244 ... P14678 39068178
    828122 8i0s:n (4.2) BS01 rna N/A GO:0000243 ... P62314 39068178
    828123 8i0s:p (4.2) BS01 rna N/A GO:0000387 ... P08579 39068178
    828124 8i0s:w (4.2) BS01 rna N/A GO:0000375 ... Q12874 39068178
    828125 8i0s:w (4.2) BS02 rna N/A GO:0000375 ... Q12874 39068178
    828126 8i0t:1 (3.0) BS01 rna N/A GO:0000245 ... O75533 39068178
    828127 8i0t:1 (3.0) BS02 rna N/A GO:0000245 ... O75533 39068178
    828128 8i0t:2 (3.0) BS01 rna N/A GO:0000387 ... Q13435 39068178
    828129 8i0t:2 (3.0) BS02 rna N/A GO:0000387 ... Q13435 39068178
    828130 8i0t:7 (3.0) BS01 ZN N/A GO:0000387 ... Q7RTV0 39068178
    828131 8i0t:7 (3.0) BS02 ZN N/A GO:0000387 ... Q7RTV0 39068178
    828132 8i0t:7 (3.0) BS03 ZN N/A GO:0000387 ... Q7RTV0 39068178
    828133 8i0t:A (3.0) BS01 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828134 8i0t:A (3.0) BS02 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828135 8i0t:A (3.0) BS03 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828136 8i0t:A (3.0) BS04 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828137 8i0t:A (3.0) BS05 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    828138 8i0t:C (3.0) BS01 rna N/A GO:0000244 ... Q15029 39068178
    828139 8i0t:C (3.0) BS02 GTP N/A GO:0000244 ... Q15029 39068178
    828140 8i0t:J (3.0) BS01 rna N/A GO:0000245 ... Q9BZJ0 39068178
    828141 8i0t:K (3.0) BS01 rna N/A GO:0000398 ... O15541 39068178
    828142 8i0t:K (3.0) BS02 ZN N/A GO:0000398 ... O15541 39068178
    828143 8i0t:L (3.0) BS01 rna N/A GO:0000077 ... Q99459 39068178
    828144 8i0t:N (3.0) BS01 rna N/A GO:0000398 ... P41223 39068178
    828145 8i0t:N (3.0) BS02 ZN N/A GO:0000398 ... P41223 39068178
    828146 8i0t:N (3.0) BS03 ZN N/A GO:0000398 ... P41223 39068178
    828147 8i0t:O (3.0) BS01 rna N/A GO:0000398 ... Q9NW64 39068178
    828148 8i0t:O (3.0) BS02 rna N/A GO:0000398 ... Q9NW64 39068178
    828149 8i0t:P (3.0) BS01 rna N/A GO:0000398 ... Q9P013 39068178
    828150 8i0t:R (3.0) BS01 rna N/A GO:0000122 ... Q13573 39068178
    828151 8i0t:T (3.0) BS01 rna N/A GO:0000398 ... O43660 39068178
    828152 8i0t:U (3.0) BS01 rna N/A GO:0000398 ... Q9UQ35 39068178
    828153 8i0t:X (3.0) BS01 rna N/A GO:0000398 ... O60231 39068178
    828154 8i0t:Y (3.0) BS01 rna N/A GO:0000398 ... Q8WUA2 39068178
    828155 8i0t:a (3.0) BS01 rna N/A GO:0000244 ... P14678 39068178
    828156 8i0t:b (3.0) BS01 rna N/A GO:0000243 ... P62314 39068178
    828157 8i0t:d (3.0) BS01 rna N/A GO:0000244 ... P62306 39068178
    828158 8i0t:e (3.0) BS01 rna N/A GO:0000244 ... P62304 39068178
    828159 8i0t:g (3.0) BS01 rna N/A GO:0000243 ... P62318 39068178
    828160 8i0t:h (3.0) BS01 rna N/A GO:0000244 ... P62316 39068178
    828161 8i0t:i (3.0) BS01 rna N/A GO:0000244 ... P62306 39068178
    828162 8i0t:j (3.0) BS01 rna N/A GO:0000244 ... P62304 39068178
    828163 8i0t:k (3.0) BS01 rna N/A GO:0000244 ... P62308 39068178
    828164 8i0t:l (3.0) BS01 rna N/A GO:0000243 ... P62318 39068178
    828165 8i0t:m (3.0) BS01 rna N/A GO:0000244 ... P14678 39068178
    828166 8i0t:n (3.0) BS01 rna N/A GO:0000243 ... P62314 39068178
    828167 8i0t:p (3.0) BS01 rna N/A GO:0000387 ... P08579 39068178
    828168 8i0t:v (3.0) BS01 rna N/A GO:0000245 ... Q15428 39068178
    828169 8i0t:v (3.0) BS02 rna N/A GO:0000245 ... Q15428 39068178
    828170 8i0t:w (3.0) BS01 rna N/A GO:0000375 ... Q12874 39068178
    828171 8i0t:w (3.0) BS02 rna N/A GO:0000375 ... Q12874 39068178
    828172 8i0u:1 (3.3) BS01 rna N/A GO:0000245 ... O75533 39068178
    828173 8i0u:1 (3.3) BS02 rna N/A GO:0000245 ... O75533 39068178
    828174 8i0u:2 (3.3) BS01 rna N/A GO:0000387 ... Q13435 39068178
    828175 8i0u:2 (3.3) BS02 rna N/A GO:0000387 ... Q13435 39068178
    828176 8i0u:7 (3.3) BS01 ZN N/A GO:0000387 ... Q7RTV0 39068178
    828177 8i0u:7 (3.3) BS02 ZN N/A GO:0000387 ... Q7RTV0 39068178
    828178 8i0u:7 (3.3) BS03 ZN N/A GO:0000387 ... Q7RTV0 39068178
    828179 8i0u:A (3.3) BS01 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828180 8i0u:A (3.3) BS02 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828181 8i0u:A (3.3) BS03 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828182 8i0u:A (3.3) BS04 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828183 8i0u:A (3.3) BS05 peptide N/A GO:0000244 ... Q6P2Q9 39068178
    828184 8i0u:A (3.3) BS06 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    828185 8i0u:C (3.3) BS01 rna N/A GO:0000244 ... Q15029 39068178
    828186 8i0u:C (3.3) BS02 GTP N/A GO:0000244 ... Q15029 39068178
    828187 8i0u:J (3.3) BS01 rna N/A GO:0000245 ... Q9BZJ0 39068178
    828188 8i0u:L (3.3) BS01 rna N/A GO:0000077 ... Q99459 39068178
    828189 8i0u:L (3.3) BS02 rna N/A GO:0000077 ... Q99459 39068178
    828190 8i0u:M (3.3) BS01 rna N/A GO:0000398 ... O95926 39068178
    828191 8i0u:M (3.3) BS02 rna N/A GO:0000398 ... O95926 39068178
    828192 8i0u:N (3.3) BS01 rna N/A GO:0000398 ... P41223 39068178
    828193 8i0u:N (3.3) BS02 ZN N/A GO:0000398 ... P41223 39068178
    828194 8i0u:N (3.3) BS03 ZN N/A GO:0000398 ... P41223 39068178
    828195 8i0u:N (3.3) BS04 ZN N/A GO:0000398 ... P41223 39068178
    828196 8i0u:O (3.3) BS01 rna N/A GO:0000398 ... Q9NW64 39068178
    828197 8i0u:O (3.3) BS02 rna N/A GO:0000398 ... Q9NW64 39068178
    828198 8i0u:P (3.3) BS01 rna N/A GO:0000398 ... Q9P013 39068178
    828199 8i0u:R (3.3) BS01 rna N/A GO:0000122 ... Q13573 39068178
    828200 8i0u:R (3.3) BS02 rna N/A GO:0000122 ... Q13573 39068178

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).