SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    828201 8imy:D (3.22) BS01 Y01 ? GO:0001916 ... Q9BZM5 37684232
    828202 8imy:G (3.22) BS01 AJP ? GO:0003923 ... O43292 37684232
    828203 8imy:G (3.22) BS02 6OU ? GO:0003923 ... O43292 37684232
    828204 8imy:G (3.22) BS03 6OU ? GO:0003923 ... O43292 37684232
    828205 8imy:G (3.22) BS04 Y01 ? GO:0003923 ... O43292 37684232
    828206 8imy:G (3.22) BS05 Y01 ? GO:0003923 ... O43292 37684232
    828207 8imy:G (3.22) BS06 MG ? GO:0003923 ... O43292 37684232
    828208 8imy:G (3.22) BS07 05E ? GO:0003923 ... O43292 37684232
    828209 8imy:K (3.22) BS01 CA 3.-.-.- GO:0003923 ... Q92643 37684232
    828210 8imy:S (3.22) BS01 LBN ? GO:0005515 ... Q96S52 37684232
    828211 8imy:S (3.22) BS02 80T ? GO:0005515 ... Q96S52 37684232
    828212 8imy:S (3.22) BS03 6OU ? GO:0005515 ... Q96S52 37684232
    828213 8imy:S (3.22) BS04 Y01 ? GO:0005515 ... Q96S52 37684232
    828214 8imy:T (3.22) BS01 81Q ? GO:0006091 ... Q969N2 37684232
    828215 8imy:T (3.22) BS02 PA1 ? GO:0006091 ... Q969N2 37684232
    828216 8imy:U (3.22) BS01 6OU ? GO:0005515 ... Q9H490 37684232
    828217 8imy:U (3.22) BS02 Y01 ? GO:0005515 ... Q9H490 37684232
    828218 8imy:U (3.22) BS03 Y01 ? GO:0005515 ... Q9H490 37684232
    828219 8imy:U (3.22) BS04 Y01 ? GO:0005515 ... Q9H490 37684232
    828220 8imy:U (3.22) BS05 Y01 ? GO:0005515 ... Q9H490 37684232
    828221 8imy:U (3.22) BS06 Y01 ? GO:0005515 ... Q9H490 37684232
    828222 8imy:U (3.22) BS07 Y01 ? GO:0005515 ... Q9H490 37684232
    828223 8imy:U (3.22) BS08 Y01 ? GO:0005515 ... Q9H490 37684232
    828224 8imy:U (3.22) BS09 Y01 ? GO:0005515 ... Q9H490 37684232
    828225 8imy:U (3.22) BS10 6OU ? GO:0005515 ... Q9H490 37684232
    828226 8imy:U (3.22) BS11 LBN ? GO:0005515 ... Q9H490 37684232
    828227 8imy:U (3.22) BS12 81Q ? GO:0005515 ... Q9H490 37684232
    828228 8imy:U (3.22) BS13 80T ? GO:0005515 ... Q9H490 37684232
    828229 8imz:A (3.66) BS01 peptide ? GO:0005261 ... E2JF22 37590348
    828230 8imz:B (3.66) BS01 peptide ? GO:0005261 ... E2JF22 37590348
    828231 8imz:C (3.66) BS01 peptide ? GO:0005261 ... E2JF22 37590348
    828232 8imz:C (3.66) BS02 peptide ? GO:0005261 ... E2JF22 37590348
    828233 8in0:A (1.8) BS01 peptide ? N/A Q9Z2X8 N/A
    828234 8in2:A (3.08) BS01 FE 1.13.11.29 GO:0005737 ... Q70FG7 N/A
    828235 8in2:B (3.08) BS01 FE 1.13.11.29 GO:0005737 ... Q70FG7 N/A
    828236 8in6:A (1.9) BS01 GGP ? GO:0005576 ... A0A1B4XTR1 37910430
    828237 8in7:A (1.9) BS01 UPG 2.4.1.- GO:0008194 ... W8JMV4 N/A
    828238 8in8:B (3.0) BS01 rna ? GO:0003674 ... Q74DF6 37311833
    828239 8in8:B (3.0) BS02 dna ? GO:0003674 ... Q74DF6 37311833
    828240 8in8:C (3.0) BS01 rna ? GO:0003674 ... Q74DF5 37311833
    828241 8in8:C (3.0) BS02 dna ? GO:0003674 ... Q74DF5 37311833
    828242 8in8:C (3.0) BS03 MG ? GO:0003674 ... Q74DF5 37311833
    828243 8in9:A (3.4) BS01 9EF ? GO:0004315 ... E0D202 37216195
    828244 8ina:A (1.86) BS01 UDP 2.4.1.- GO:0008194 ... W8JMV4 N/A
    828245 8inb:A (3.1) BS01 rna N/A N/A N/A 37990011
    828246 8inb:A (3.1) BS02 dna N/A N/A N/A 37990011
    828247 8inb:A (3.1) BS03 dna N/A N/A N/A 37990011
    828248 8ind:A (1.85) BS01 6JI 2.4.1.- GO:0008194 ... W8JMV4 N/A
    828249 8ind:A (1.85) BS02 UDP 2.4.1.- GO:0008194 ... W8JMV4 N/A
    828250 8ine:3 (3.2) BS01 rna ? GO:0000463 ... Q6DKI1 37491604
    828251 8ine:3 (3.2) BS02 rna ? GO:0000463 ... Q6DKI1 37491604
    828252 8ine:3 (3.2) BS03 rna ? GO:0000463 ... Q6DKI1 37491604
    828253 8ine:4 (3.2) BS01 rna ? GO:0000079 ... Q9BZE4 37491604
    828254 8ine:4 (3.2) BS02 rna ? GO:0000079 ... Q9BZE4 37491604
    828255 8ine:6 (3.2) BS01 rna ? GO:0000054 ... P56537 37491604
    828256 8ine:7 (3.2) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    828257 8ine:9 (3.2) BS01 rna ? GO:0003676 ... O00488 37491604
    828258 8ine:A (3.2) BS01 rna ? GO:0003723 ... Q13823 37491604
    828259 8ine:A (3.2) BS02 GDP ? GO:0003723 ... Q13823 37491604
    828260 8ine:B (3.2) BS01 rna ? GO:0002181 ... P39023 37491604
    828261 8ine:C (3.2) BS01 rna ? GO:0002181 ... P47914 37491604
    828262 8ine:D (3.2) BS01 rna ? GO:0002181 ... P36578 37491604
    828263 8ine:D (3.2) BS02 rna ? GO:0002181 ... P36578 37491604
    828264 8ine:E (3.2) BS01 rna ? GO:0002181 ... P62888 37491604
    828265 8ine:F (3.2) BS01 rna ? GO:0002181 ... P49207 37491604
    828266 8ine:G (3.2) BS01 rna ? GO:0000470 ... P62424 37491604
    828267 8ine:G (3.2) BS02 rna ? GO:0000470 ... P62424 37491604
    828268 8ine:H (3.2) BS01 rna ? GO:0000463 ... P42766 37491604
    828269 8ine:H (3.2) BS02 rna ? GO:0000463 ... P42766 37491604
    828270 8ine:I (3.2) BS01 rna ? GO:0002181 ... P32969 37491604
    828271 8ine:J (3.2) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    828272 8ine:K (3.2) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    828273 8ine:L (3.2) BS01 rna ? GO:0002181 ... P46776 37491604
    828274 8ine:M (3.2) BS01 rna ? GO:0002181 ... P61927 37491604
    828275 8ine:M (3.2) BS02 rna ? GO:0002181 ... P61927 37491604
    828276 8ine:N (3.2) BS01 rna ? GO:0000027 ... P62913 37491604
    828277 8ine:N (3.2) BS02 rna ? GO:0000027 ... P62913 37491604
    828278 8ine:O (3.2) BS01 rna ? GO:0001501 ... P63173 37491604
    828279 8ine:P (3.2) BS01 rna ? GO:0002181 ... P62891 37491604
    828280 8ine:P (3.2) BS02 rna ? GO:0002181 ... P62891 37491604
    828281 8ine:Q (3.2) BS01 rna ? GO:0001824 ... P26373 37491604
    828282 8ine:Q (3.2) BS02 rna ? GO:0001824 ... P26373 37491604
    828283 8ine:R (3.2) BS01 rna ? GO:0005515 ... Q96EY4 37491604
    828284 8ine:R (3.2) BS02 rna ? GO:0005515 ... Q96EY4 37491604
    828285 8ine:S (3.2) BS01 rna ? GO:0002181 ... P50914 37491604
    828286 8ine:T (3.2) BS01 rna ? N/A Q9UNZ5 37491604
    828287 8ine:U (3.2) BS01 rna ? GO:0002181 ... P61313 37491604
    828288 8ine:U (3.2) BS02 rna ? GO:0002181 ... P61313 37491604
    828289 8ine:V (3.2) BS01 rna ? GO:0002181 ... P40429 37491604
    828290 8ine:W (3.2) BS01 rna ? GO:0002181 ... P83881 37491604
    828291 8ine:X (3.2) BS01 rna ? GO:0002181 ... P61513 37491604
    828292 8ine:Y (3.2) BS01 rna ? GO:0002181 ... P18621 37491604
    828293 8ine:Y (3.2) BS02 rna ? GO:0002181 ... P18621 37491604
    828294 8ine:Z (3.2) BS01 rna ? GO:0002181 ... Q07020 37491604
    828295 8ine:a (3.2) BS01 rna ? GO:0002181 ... P84098 37491604
    828296 8ine:b (3.2) BS01 rna ? GO:0002181 ... Q02543 37491604
    828297 8ine:b (3.2) BS02 rna ? GO:0002181 ... Q02543 37491604
    828298 8ine:c (3.2) BS01 rna ? GO:0002181 ... P46778 37491604
    828299 8ine:c (3.2) BS02 rna ? GO:0002181 ... P46778 37491604
    828300 8ine:d (3.2) BS01 rna ? GO:0002181 ... P35268 37491604
    828301 8ine:e (3.2) BS01 rna ? GO:0000122 ... P62829 37491604
    828302 8ine:g (3.2) BS01 rna ? GO:0002181 ... P62750 37491604
    828303 8ine:g (3.2) BS02 rna ? GO:0002181 ... P62750 37491604
    828304 8ine:h (3.2) BS01 rna ? GO:0002181 ... P61254 37491604
    828305 8ine:h (3.2) BS02 rna ? GO:0002181 ... P61254 37491604
    828306 8ine:i (3.2) BS01 rna ? GO:0002181 ... P61353 37491604
    828307 8ine:j (3.2) BS01 rna ? GO:0002181 ... P62899 37491604
    828308 8ine:k (3.2) BS01 rna ? GO:0002181 ... P62910 37491604
    828309 8ine:l (3.2) BS01 rna ? GO:0002181 ... P46779 37491604
    828310 8ine:m (3.2) BS01 rna ? GO:0002181 ... P62917 37491604
    828311 8ine:n (3.2) BS01 rna ? GO:0000049 ... P18077 37491604
    828312 8ine:o (3.2) BS01 rna ? GO:0002181 ... Q02878 37491604
    828313 8ine:p (3.2) BS01 rna ? GO:0000463 ... P18124 37491604
    828314 8ine:p (3.2) BS02 rna ? GO:0000463 ... P18124 37491604
    828315 8ine:r (3.2) BS01 rna ? GO:0000027 ... P46777 37491604
    828316 8ine:r (3.2) BS02 rna ? GO:0000027 ... P46777 37491604
    828317 8ine:s (3.2) BS01 rna ? GO:0000460 ... O95478 37491604
    828318 8ine:t (3.2) BS01 rna ? GO:0000794 ... Q9BYG3 37491604
    828319 8ine:u (3.2) BS01 rna ? GO:0001649 ... O76021 37491604
    828320 8ine:v (3.2) BS01 rna ? GO:0000463 ... O00541 37491604
    828321 8ine:v (3.2) BS02 rna ? GO:0000463 ... O00541 37491604
    828322 8ine:w (3.2) BS01 rna ? GO:0000027 ... Q9NZM5 37491604
    828323 8ine:y (3.2) BS01 rna ? GO:0002181 ... P30050 37491604
    828324 8ine:z (3.2) BS01 rna ? GO:0001099 ... Q9BRT6 37491604
    828325 8inf:1 (3.0) BS01 rna ? N/A E9PRG8 37491604
    828326 8inf:1 (3.0) BS02 rna ? N/A E9PRG8 37491604
    828327 8inf:3 (3.0) BS01 rna ? GO:0000463 ... Q6DKI1 37491604
    828328 8inf:3 (3.0) BS02 rna ? GO:0000463 ... Q6DKI1 37491604
    828329 8inf:3 (3.0) BS03 rna ? GO:0000463 ... Q6DKI1 37491604
    828330 8inf:4 (3.0) BS01 rna ? GO:0000079 ... Q9BZE4 37491604
    828331 8inf:4 (3.0) BS02 rna ? GO:0000079 ... Q9BZE4 37491604
    828332 8inf:6 (3.0) BS01 rna ? GO:0000054 ... P56537 37491604
    828333 8inf:7 (3.0) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    828334 8inf:9 (3.0) BS01 rna ? GO:0003676 ... O00488 37491604
    828335 8inf:A (3.0) BS01 rna ? GO:0003723 ... Q13823 37491604
    828336 8inf:A (3.0) BS02 GDP ? GO:0003723 ... Q13823 37491604
    828337 8inf:B (3.0) BS01 rna ? GO:0002181 ... P39023 37491604
    828338 8inf:C (3.0) BS01 rna ? GO:0002181 ... P47914 37491604
    828339 8inf:D (3.0) BS01 rna ? GO:0002181 ... P36578 37491604
    828340 8inf:D (3.0) BS02 rna ? GO:0002181 ... P36578 37491604
    828341 8inf:E (3.0) BS01 rna ? GO:0002181 ... P62888 37491604
    828342 8inf:F (3.0) BS01 rna ? GO:0002181 ... P49207 37491604
    828343 8inf:G (3.0) BS01 rna ? GO:0000470 ... P62424 37491604
    828344 8inf:G (3.0) BS02 rna ? GO:0000470 ... P62424 37491604
    828345 8inf:H (3.0) BS01 rna ? GO:0000463 ... P42766 37491604
    828346 8inf:H (3.0) BS02 rna ? GO:0000463 ... P42766 37491604
    828347 8inf:I (3.0) BS01 rna ? GO:0002181 ... P32969 37491604
    828348 8inf:J (3.0) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    828349 8inf:K (3.0) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    828350 8inf:L (3.0) BS01 rna ? GO:0002181 ... P46776 37491604
    828351 8inf:M (3.0) BS01 rna ? GO:0002181 ... P61927 37491604
    828352 8inf:M (3.0) BS02 rna ? GO:0002181 ... P61927 37491604
    828353 8inf:N (3.0) BS01 rna ? GO:0000027 ... P62913 37491604
    828354 8inf:N (3.0) BS02 rna ? GO:0000027 ... P62913 37491604
    828355 8inf:O (3.0) BS01 rna ? GO:0001501 ... P63173 37491604
    828356 8inf:P (3.0) BS01 rna ? GO:0002181 ... P62891 37491604
    828357 8inf:P (3.0) BS02 rna ? GO:0002181 ... P62891 37491604
    828358 8inf:Q (3.0) BS01 rna ? GO:0001824 ... P26373 37491604
    828359 8inf:Q (3.0) BS02 rna ? GO:0001824 ... P26373 37491604
    828360 8inf:R (3.0) BS01 rna ? GO:0005515 ... Q96EY4 37491604
    828361 8inf:R (3.0) BS02 rna ? GO:0005515 ... Q96EY4 37491604
    828362 8inf:S (3.0) BS01 rna ? GO:0002181 ... P50914 37491604
    828363 8inf:T (3.0) BS01 rna ? N/A Q9UNZ5 37491604
    828364 8inf:U (3.0) BS01 rna ? GO:0002181 ... P61313 37491604
    828365 8inf:U (3.0) BS02 rna ? GO:0002181 ... P61313 37491604
    828366 8inf:V (3.0) BS01 rna ? GO:0002181 ... P40429 37491604
    828367 8inf:W (3.0) BS01 rna ? GO:0002181 ... P83881 37491604
    828368 8inf:X (3.0) BS01 rna ? GO:0002181 ... P61513 37491604
    828369 8inf:Y (3.0) BS01 rna ? GO:0002181 ... P18621 37491604
    828370 8inf:Y (3.0) BS02 rna ? GO:0002181 ... P18621 37491604
    828371 8inf:Z (3.0) BS01 rna ? GO:0002181 ... Q07020 37491604
    828372 8inf:a (3.0) BS01 rna ? GO:0002181 ... P84098 37491604
    828373 8inf:b (3.0) BS01 rna ? GO:0002181 ... Q02543 37491604
    828374 8inf:b (3.0) BS02 rna ? GO:0002181 ... Q02543 37491604
    828375 8inf:c (3.0) BS01 rna ? GO:0002181 ... P46778 37491604
    828376 8inf:d (3.0) BS01 rna ? GO:0002181 ... P35268 37491604
    828377 8inf:e (3.0) BS01 rna ? GO:0000122 ... P62829 37491604
    828378 8inf:f (3.0) BS01 rna ? GO:0000055 ... Q9NVU7 37491604
    828379 8inf:g (3.0) BS01 rna ? GO:0002181 ... P62750 37491604
    828380 8inf:g (3.0) BS02 rna ? GO:0002181 ... P62750 37491604
    828381 8inf:h (3.0) BS01 rna ? GO:0002181 ... P61254 37491604
    828382 8inf:h (3.0) BS02 rna ? GO:0002181 ... P61254 37491604
    828383 8inf:i (3.0) BS01 rna ? GO:0002181 ... P61353 37491604
    828384 8inf:j (3.0) BS01 rna ? GO:0002181 ... P62899 37491604
    828385 8inf:k (3.0) BS01 rna ? GO:0002181 ... P62910 37491604
    828386 8inf:l (3.0) BS01 rna ? GO:0002181 ... P46779 37491604
    828387 8inf:m (3.0) BS01 rna ? GO:0002181 ... P62917 37491604
    828388 8inf:n (3.0) BS01 rna ? GO:0000049 ... P18077 37491604
    828389 8inf:o (3.0) BS01 rna ? GO:0002181 ... Q02878 37491604
    828390 8inf:p (3.0) BS01 rna ? GO:0000463 ... P18124 37491604
    828391 8inf:p (3.0) BS02 rna ? GO:0000463 ... P18124 37491604
    828392 8inf:q (3.0) BS01 rna ? GO:0002181 ... P62906 37491604
    828393 8inf:r (3.0) BS01 rna ? GO:0000027 ... P46777 37491604
    828394 8inf:r (3.0) BS02 rna ? GO:0000027 ... P46777 37491604
    828395 8inf:s (3.0) BS01 rna ? GO:0000460 ... O95478 37491604
    828396 8inf:t (3.0) BS01 rna ? GO:0000794 ... Q9BYG3 37491604
    828397 8inf:u (3.0) BS01 rna ? GO:0001649 ... O76021 37491604
    828398 8inf:v (3.0) BS01 rna ? GO:0000463 ... O00541 37491604
    828399 8inf:v (3.0) BS02 rna ? GO:0000463 ... O00541 37491604
    828400 8inf:w (3.0) BS01 rna ? GO:0000027 ... Q9NZM5 37491604

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).