SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    828201 8i0u:U (3.3) BS01 rna N/A GO:0000398 ... Q9UQ35 39068178
    828202 8i0u:X (3.3) BS01 rna N/A GO:0000398 ... O60231 39068178
    828203 8i0u:Y (3.3) BS01 rna N/A GO:0000398 ... Q8WUA2 39068178
    828204 8i0u:b (3.3) BS01 rna N/A GO:0000243 ... P62314 39068178
    828205 8i0u:c (3.3) BS01 rna N/A GO:0000244 ... P62316 39068178
    828206 8i0u:d (3.3) BS01 rna N/A GO:0000244 ... P62306 39068178
    828207 8i0u:e (3.3) BS01 rna N/A GO:0000244 ... P62304 39068178
    828208 8i0u:f (3.3) BS01 rna N/A GO:0000244 ... P62308 39068178
    828209 8i0u:g (3.3) BS01 rna N/A GO:0000243 ... P62318 39068178
    828210 8i0u:h (3.3) BS01 rna N/A GO:0000244 ... P62316 39068178
    828211 8i0u:i (3.3) BS01 rna N/A GO:0000244 ... P62306 39068178
    828212 8i0u:j (3.3) BS01 rna N/A GO:0000244 ... P62304 39068178
    828213 8i0u:k (3.3) BS01 rna N/A GO:0000244 ... P62308 39068178
    828214 8i0u:l (3.3) BS01 rna N/A GO:0000243 ... P62318 39068178
    828215 8i0u:m (3.3) BS01 rna N/A GO:0000244 ... P14678 39068178
    828216 8i0u:n (3.3) BS01 rna N/A GO:0000243 ... P62314 39068178
    828217 8i0u:p (3.3) BS01 rna N/A GO:0000387 ... P08579 39068178
    828218 8i0u:w (3.3) BS01 rna N/A GO:0000375 ... Q12874 39068178
    828219 8i0u:w (3.3) BS02 rna N/A GO:0000375 ... Q12874 39068178
    828220 8i0v:2 (3.0) BS01 rna N/A GO:0000387 ... Q13435 39068178
    828221 8i0v:4 (3.0) BS01 rna N/A GO:0000375 ... Q15427 39068178
    828222 8i0v:7 (3.0) BS01 ZN N/A GO:0000387 ... Q7RTV0 39068178
    828223 8i0v:7 (3.0) BS02 ZN N/A GO:0000387 ... Q7RTV0 39068178
    828224 8i0v:7 (3.0) BS03 ZN N/A GO:0000387 ... Q7RTV0 39068178
    828225 8i0v:A (3.0) BS01 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828226 8i0v:A (3.0) BS02 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828227 8i0v:A (3.0) BS03 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828228 8i0v:A (3.0) BS04 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828229 8i0v:A (3.0) BS05 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    828230 8i0v:C (3.0) BS01 rna N/A GO:0000244 ... Q15029 39068178
    828231 8i0v:C (3.0) BS02 GTP N/A GO:0000244 ... Q15029 39068178
    828232 8i0v:J (3.0) BS01 rna N/A GO:0000245 ... Q9BZJ0 39068178
    828233 8i0v:L (3.0) BS01 rna N/A GO:0000077 ... Q99459 39068178
    828234 8i0v:L (3.0) BS02 rna N/A GO:0000077 ... Q99459 39068178
    828235 8i0v:M (3.0) BS01 rna N/A GO:0000398 ... O95926 39068178
    828236 8i0v:M (3.0) BS02 rna N/A GO:0000398 ... O95926 39068178
    828237 8i0v:N (3.0) BS01 rna N/A GO:0000398 ... P41223 39068178
    828238 8i0v:N (3.0) BS02 ZN N/A GO:0000398 ... P41223 39068178
    828239 8i0v:N (3.0) BS03 ZN N/A GO:0000398 ... P41223 39068178
    828240 8i0v:N (3.0) BS04 ZN N/A GO:0000398 ... P41223 39068178
    828241 8i0v:O (3.0) BS01 rna N/A GO:0000398 ... Q9NW64 39068178
    828242 8i0v:O (3.0) BS02 rna N/A GO:0000398 ... Q9NW64 39068178
    828243 8i0v:P (3.0) BS01 rna N/A GO:0000398 ... Q9P013 39068178
    828244 8i0v:R (3.0) BS01 rna N/A GO:0000122 ... Q13573 39068178
    828245 8i0v:R (3.0) BS02 rna N/A GO:0000122 ... Q13573 39068178
    828246 8i0v:U (3.0) BS01 rna N/A GO:0000398 ... Q9UQ35 39068178
    828247 8i0v:X (3.0) BS01 rna N/A GO:0000398 ... O60231 39068178
    828248 8i0v:Y (3.0) BS01 rna N/A GO:0000398 ... Q8WUA2 39068178
    828249 8i0v:a (3.0) BS01 rna N/A GO:0000244 ... P14678 39068178
    828250 8i0v:b (3.0) BS01 rna N/A GO:0000243 ... P62314 39068178
    828251 8i0v:c (3.0) BS01 rna N/A GO:0000244 ... P62316 39068178
    828252 8i0v:d (3.0) BS01 rna N/A GO:0000244 ... P62306 39068178
    828253 8i0v:e (3.0) BS01 rna N/A GO:0000244 ... P62304 39068178
    828254 8i0v:g (3.0) BS01 rna N/A GO:0000243 ... P62318 39068178
    828255 8i0v:h (3.0) BS01 rna N/A GO:0000244 ... P62316 39068178
    828256 8i0v:i (3.0) BS01 rna N/A GO:0000244 ... P62306 39068178
    828257 8i0v:j (3.0) BS01 rna N/A GO:0000244 ... P62304 39068178
    828258 8i0v:k (3.0) BS01 rna N/A GO:0000244 ... P62308 39068178
    828259 8i0v:l (3.0) BS01 rna N/A GO:0000243 ... P62318 39068178
    828260 8i0v:m (3.0) BS01 rna N/A GO:0000244 ... P14678 39068178
    828261 8i0v:n (3.0) BS01 rna N/A GO:0000243 ... P62314 39068178
    828262 8i0v:p (3.0) BS01 rna N/A GO:0000387 ... P08579 39068178
    828263 8i0w:1 (3.4) BS01 rna N/A GO:0000398 ... Q9NW82 39068178
    828264 8i0w:A (3.4) BS01 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828265 8i0w:A (3.4) BS02 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828266 8i0w:A (3.4) BS03 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828267 8i0w:A (3.4) BS04 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828268 8i0w:A (3.4) BS05 rna N/A GO:0000244 ... Q6P2Q9 39068178
    828269 8i0w:A (3.4) BS06 peptide N/A GO:0000244 ... Q6P2Q9 39068178
    828270 8i0w:A (3.4) BS07 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    828271 8i0w:C (3.4) BS01 rna N/A GO:0000244 ... Q15029 39068178
    828272 8i0w:C (3.4) BS02 GTP N/A GO:0000244 ... Q15029 39068178
    828273 8i0w:J (3.4) BS01 rna N/A GO:0000245 ... Q9BZJ0 39068178
    828274 8i0w:L (3.4) BS01 rna N/A GO:0000077 ... Q99459 39068178
    828275 8i0w:L (3.4) BS02 rna N/A GO:0000077 ... Q99459 39068178
    828276 8i0w:M (3.4) BS01 rna N/A GO:0000398 ... O95926 39068178
    828277 8i0w:M (3.4) BS02 rna N/A GO:0000398 ... O95926 39068178
    828278 8i0w:N (3.4) BS01 rna N/A GO:0000398 ... P41223 39068178
    828279 8i0w:N (3.4) BS02 ZN N/A GO:0000398 ... P41223 39068178
    828280 8i0w:N (3.4) BS03 ZN N/A GO:0000398 ... P41223 39068178
    828281 8i0w:N (3.4) BS04 ZN N/A GO:0000398 ... P41223 39068178
    828282 8i0w:O (3.4) BS01 rna N/A GO:0000398 ... Q9NW64 39068178
    828283 8i0w:O (3.4) BS02 rna N/A GO:0000398 ... Q9NW64 39068178
    828284 8i0w:O (3.4) BS03 ZN N/A GO:0000398 ... Q9NW64 39068178
    828285 8i0w:O (3.4) BS04 ZN N/A GO:0000398 ... Q9NW64 39068178
    828286 8i0w:O (3.4) BS05 ZN N/A GO:0000398 ... Q9NW64 39068178
    828287 8i0w:P (3.4) BS01 rna N/A GO:0000398 ... Q9P013 39068178
    828288 8i0w:R (3.4) BS01 rna N/A GO:0000122 ... Q13573 39068178
    828289 8i0w:T (3.4) BS01 rna N/A GO:0000398 ... O43660 39068178
    828290 8i0w:U (3.4) BS01 rna N/A GO:0000398 ... Q9UQ35 39068178
    828291 8i0w:W (3.4) BS01 rna N/A GO:0000398 ... O60508 39068178
    828292 8i0w:W (3.4) BS02 rna N/A GO:0000398 ... O60508 39068178
    828293 8i0w:X (3.4) BS01 rna N/A GO:0000398 ... Q9NXE8 39068178
    828294 8i0w:X (3.4) BS02 rna N/A GO:0000398 ... Q9NXE8 39068178
    828295 8i0w:Y (3.4) BS01 rna N/A GO:0000349 ... Q9BW85 39068178
    828296 8i0w:Y (3.4) BS02 rna N/A GO:0000349 ... Q9BW85 39068178
    828297 8i0w:Y (3.4) BS03 rna N/A GO:0000349 ... Q9BW85 39068178
    828298 8i0w:Y (3.4) BS04 ZN N/A GO:0000349 ... Q9BW85 39068178
    828299 8i0w:a (3.4) BS01 rna N/A GO:0000244 ... P14678 39068178
    828300 8i0w:b (3.4) BS01 rna N/A GO:0000243 ... P62314 39068178
    828301 8i0w:c (3.4) BS01 rna N/A GO:0000244 ... P62316 39068178
    828302 8i0w:d (3.4) BS01 rna N/A GO:0000244 ... P62306 39068178
    828303 8i0w:e (3.4) BS01 rna N/A GO:0000244 ... P62304 39068178
    828304 8i0w:g (3.4) BS01 rna N/A GO:0000243 ... P62318 39068178
    828305 8i0w:h (3.4) BS01 rna N/A GO:0000243 ... P62318 39068178
    828306 8i0w:i (3.4) BS01 rna N/A GO:0000244 ... P14678 39068178
    828307 8i0w:j (3.4) BS01 rna N/A GO:0000243 ... P62314 39068178
    828308 8i0w:k (3.4) BS01 rna N/A GO:0000244 ... P62316 39068178
    828309 8i0w:l (3.4) BS01 rna N/A GO:0000244 ... P62304 39068178
    828310 8i0w:m (3.4) BS01 rna N/A GO:0000244 ... P62306 39068178
    828311 8i0w:n (3.4) BS01 rna N/A GO:0000244 ... P62308 39068178
    828312 8i0w:p (3.4) BS01 rna N/A GO:0000387 ... P08579 39068178
    828313 8i0w:u (3.4) BS01 rna N/A GO:0000184 ... P38919 39068178
    828314 8i0w:u (3.4) BS02 peptide N/A GO:0000184 ... P38919 39068178
    828315 8i0w:v (3.4) BS01 peptide N/A GO:0000184 ... P61326 39068178
    828316 8i0w:z (3.4) BS01 rna N/A GO:0000350 ... Q9ULR0 39068178
    828317 8i0w:z (3.4) BS02 rna N/A GO:0000350 ... Q9ULR0 39068178
    828318 8i0y:A (1.792) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    828319 8i0y:A (1.792) BS02 O76 1.13.11.27 GO:0003868 ... P93836 N/A
    828320 8i0z:A (4.33) BS01 peptide ? GO:0000822 ... P32120 37209686
    828321 8i0z:B (4.33) BS01 peptide ? GO:0000822 ... P32120 37209686
    828322 8i0z:C (4.33) BS01 peptide ? GO:0000822 ... P32120 37209686
    828323 8i0z:E (4.33) BS01 peptide N/A N/A N/A 37209686
    828324 8i0z:L (4.33) BS01 peptide N/A N/A N/A 37209686
    828325 8i0z:N (4.33) BS01 peptide N/A N/A N/A 37209686
    828326 8i10:A (3.96) BS01 peptide ? GO:0000822 ... P32120 37209686
    828327 8i10:B (3.96) BS01 peptide ? GO:0000822 ... P32120 37209686
    828328 8i10:C (3.96) BS01 peptide ? GO:0000822 ... P32120 37209686
    828329 8i10:E (3.96) BS01 peptide N/A N/A N/A 37209686
    828330 8i11:A (1.855) BS01 FMN 2.7.11.1 N/A A0A1Y1HNG4 39344087
    828331 8i15:A (2.19) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    828332 8i15:A (2.19) BS02 O7C 1.13.11.27 GO:0003868 ... P93836 N/A
    828333 8i16:A (2.24) BS01 ZN ? N/A A0ACD6B9V5 37729124
    828334 8i16:A (2.24) BS02 ZN ? N/A A0ACD6B9V5 37729124
    828335 8i17:B (1.98) BS01 peptide ? GO:0000786 ... P06899 36801613
    828336 8i17:B (1.98) BS02 peptide ? GO:0000786 ... P06899 36801613
    828337 8i17:E (1.98) BS01 peptide ? GO:0000786 ... P06899 36801613
    828338 8i17:E (1.98) BS02 peptide ? GO:0000786 ... P06899 36801613
    828339 8i17:H (1.98) BS01 peptide ? GO:0000786 ... P06899 36801613
    828340 8i18:A (1.1) BS01 8DG 3.6.1.-
    3.6.1.56
    GO:0005515 ... P36639 36914375
    828341 8i18:B (1.1) BS01 8DG 3.6.1.-
    3.6.1.56
    GO:0005515 ... P36639 36914375
    828342 8i19:A (1.48) BS01 8DG 3.6.1.-
    3.6.1.56
    GO:0005515 ... P36639 36914375
    828343 8i19:B (1.48) BS01 8DG 3.6.1.-
    3.6.1.56
    GO:0005515 ... P36639 36914375
    828344 8i1a:A (1.4) BS01 8DG 3.6.1.-
    3.6.1.56
    GO:0005515 ... P36639 36914375
    828345 8i1a:B (1.4) BS01 8DG 3.6.1.-
    3.6.1.56
    GO:0005515 ... P36639 36914375
    828346 8i1d:A (1.2) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0005515 ... P36639 36914375
    828347 8i1d:B (1.2) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0005515 ... P36639 36914375
    828348 8i1e:A (1.1) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0005515 ... P36639 36914375
    828349 8i1e:B (1.1) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0005515 ... P36639 36914375
    828350 8i1f:A (1.05) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0005515 ... P36639 36914375
    828351 8i1f:B (1.05) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0005515 ... P36639 36914375
    828352 8i1g:A (1.18) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0005515 ... P36639 36914375
    828353 8i1i:A (1.2) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0005515 ... P36639 36914375
    828354 8i1i:B (1.2) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0005515 ... P36639 36914375
    828355 8i1j:A (1.08) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0005515 ... P36639 36914375
    828356 8i1j:B (1.08) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0005515 ... P36639 36914375
    828357 8i1m:A (1.699) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O43252 37207644
    828358 8i1m:A (1.699) BS02 ADX 2.7.1.25
    2.7.7.4
    GO:0000103 ... O43252 37207644
    828359 8i1n:A (2.8) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    828360 8i1n:B (2.8) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    828361 8i1n:B (2.8) BS02 ADX 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    828362 8i1n:C (2.8) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    828363 8i1n:C (2.8) BS02 ADX 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    828364 8i1n:D (2.8) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    828365 8i1o:A (2.4) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    828366 8i1o:A (2.4) BS02 ADX 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    828367 8i1o:B (2.4) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    828368 8i1o:B (2.4) BS02 ADX 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    828369 8i1o:C (2.4) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    828370 8i1o:C (2.4) BS02 ADX 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    828371 8i1o:D (2.4) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    828372 8i1o:D (2.4) BS02 ADX 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    828373 8i1u:A (3.24) BS01 ADP ? GO:0000242 ... P17987 38307855
    828374 8i1u:A (3.24) BS02 AF3 ? GO:0000242 ... P17987 38307855
    828375 8i1u:B (3.24) BS01 ADP ? GO:0002199 ... P78371 38307855
    828376 8i1u:B (3.24) BS02 MG ? GO:0002199 ... P78371 38307855
    828377 8i1u:B (3.24) BS03 AF3 ? GO:0002199 ... P78371 38307855
    828378 8i1u:C (3.24) BS01 ADP ? GO:0002199 ... P49368 38307855
    828379 8i1u:C (3.24) BS02 AF3 ? GO:0002199 ... P49368 38307855
    828380 8i1u:D (3.24) BS01 ADP ? GO:0002199 ... P50991 38307855
    828381 8i1u:D (3.24) BS02 AF3 ? GO:0002199 ... P50991 38307855
    828382 8i1u:E (3.24) BS01 ADP ? GO:0003730 ... P48643 38307855
    828383 8i1u:E (3.24) BS02 AF3 ? GO:0003730 ... P48643 38307855
    828384 8i1u:F (3.24) BS01 ADP ? GO:0003723 ... P40227 38307855
    828385 8i1u:F (3.24) BS02 AF3 ? GO:0003723 ... P40227 38307855
    828386 8i1u:G (3.24) BS01 ADP ? GO:0005515 ... Q99832 38307855
    828387 8i1u:G (3.24) BS02 AF3 ? GO:0005515 ... Q99832 38307855
    828388 8i1u:H (3.24) BS01 ADP ? GO:0002199 ... P50990 38307855
    828389 8i1u:H (3.24) BS02 AF3 ? GO:0002199 ... P50990 38307855
    828390 8i1u:I (3.24) BS01 ADP ? GO:0000242 ... P17987 38307855
    828391 8i1u:I (3.24) BS02 AF3 ? GO:0000242 ... P17987 38307855
    828392 8i1u:J (3.24) BS01 ADP ? GO:0002199 ... P78371 38307855
    828393 8i1u:J (3.24) BS02 AF3 ? GO:0002199 ... P78371 38307855
    828394 8i1u:K (3.24) BS01 ADP ? GO:0002199 ... P49368 38307855
    828395 8i1u:K (3.24) BS02 AF3 ? GO:0002199 ... P49368 38307855
    828396 8i1u:L (3.24) BS01 ADP ? GO:0002199 ... P50991 38307855
    828397 8i1u:L (3.24) BS02 AF3 ? GO:0002199 ... P50991 38307855
    828398 8i1u:M (3.24) BS01 ADP ? GO:0003730 ... P48643 38307855
    828399 8i1u:M (3.24) BS02 AF3 ? GO:0003730 ... P48643 38307855
    828400 8i1u:N (3.24) BS01 ADP ? GO:0003723 ... P40227 38307855

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).