SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    829001 8ipb:LA (3.4) BS01 rna ? GO:0003723 ... A0A3B6DA12 38267667
    829002 8ipb:LA (3.4) BS02 rna ? GO:0003723 ... A0A3B6DA12 38267667
    829003 8ipb:LB (3.4) BS01 rna ? GO:0003735 ... A0A3B6QGW3 38267667
    829004 8ipb:MA (3.4) BS01 rna ? GO:0002181 ... W5FSM8 38267667
    829005 8ipb:MA (3.4) BS02 rna ? GO:0002181 ... W5FSM8 38267667
    829006 8ipb:MB (3.4) BS01 rna ? GO:0002181 ... A0A0C4BK99 38267667
    829007 8ipb:NA (3.4) BS01 rna ? GO:0003735 ... A0A1D5UQZ5 38267667
    829008 8ipb:NA (3.4) BS02 rna ? GO:0003735 ... A0A1D5UQZ5 38267667
    829009 8ipb:NB (3.4) BS01 rna ? GO:0003735 ... A0A1D5W6Q2 38267667
    829010 8ipb:OA (3.4) BS01 rna ? GO:0002181 ... W5CDW4 38267667
    829011 8ipb:OB (3.4) BS01 rna ? GO:0002181 ... A0A1D5RRD3 38267667
    829012 8ipb:PA (3.4) BS01 rna ? GO:0002181 ... A0A3B6GQI2 38267667
    829013 8ipb:PA (3.4) BS02 rna ? GO:0002181 ... A0A3B6GQI2 38267667
    829014 8ipb:PB (3.4) BS01 rna ? GO:0003735 ... A0A3B6RFY8 38267667
    829015 8ipb:PB (3.4) BS02 MG ? GO:0003735 ... A0A3B6RFY8 38267667
    829016 8ipb:QA (3.4) BS01 rna ? GO:0003735 ... A0A3B5ZZN9 38267667
    829017 8ipb:RA (3.4) BS01 rna ? GO:0003723 ... Q5I7K9 38267667
    829018 8ipb:SA (3.4) BS01 rna ? GO:0002181 ... W5G990 38267667
    829019 8ipb:TA (3.4) BS01 rna ? GO:0003735 ... A0A3B6SDD9 38267667
    829020 8ipb:UA (3.4) BS01 rna ? GO:0003723 ... A0A1D6BC85 38267667
    829021 8ipb:UA (3.4) BS02 rna ? GO:0003723 ... A0A1D6BC85 38267667
    829022 8ipb:VA (3.4) BS01 rna ? GO:0003735 ... Q5I7K7 38267667
    829023 8ipb:VA (3.4) BS02 rna ? GO:0003735 ... Q5I7K7 38267667
    829024 8ipb:WA (3.4) BS01 rna ? GO:0003735 ... W5HX73 38267667
    829025 8ipb:WA (3.4) BS02 ZN ? GO:0003735 ... W5HX73 38267667
    829026 8ipb:XA (3.4) BS01 rna ? GO:0003723 ... A0A3B6DGT8 38267667
    829027 8ipb:YA (3.4) BS01 rna ? GO:0002181 ... W5D7B8 38267667
    829028 8ipb:YA (3.4) BS02 rna ? GO:0002181 ... W5D7B8 38267667
    829029 8ipb:ZA (3.4) BS01 rna ? GO:0002181 ... A0A3B6C0D4 38267667
    829030 8ipb:ba (3.4) BS01 rna ? GO:0003735 ... A0A3B6PK86 38267667
    829031 8ipb:bb (3.4) BS01 rna ? GO:0003735 ... A0A3B6IU74 38267667
    829032 8ipb:ca (3.4) BS01 rna ? GO:0000462 ... A0A3B6AYT7 38267667
    829033 8ipb:ca (3.4) BS02 rna ? GO:0000462 ... A0A3B6AYT7 38267667
    829034 8ipb:da (3.4) BS01 rna ? GO:0003723 ... W5AUH7 38267667
    829035 8ipb:db (3.4) BS01 rna ? GO:0003729 ... A0A3B6LWE1 38267667
    829036 8ipb:db (3.4) BS02 ZN ? GO:0003729 ... A0A3B6LWE1 38267667
    829037 8ipb:eb (3.4) BS01 rna ? GO:0003723 ... W5FPA7 38267667
    829038 8ipb:fb (3.4) BS01 rna ? GO:0003723 ... A0A3B6LVN2 38267667
    829039 8ipb:ga (3.4) BS01 rna ? GO:0003735 ... W5FV77 38267667
    829040 8ipb:gb (3.4) BS01 rna ? GO:0003735 ... A0A2X0SLI3 38267667
    829041 8ipb:ha (3.4) BS01 rna ? GO:0005080 ... W5D4F5 38267667
    829042 8ipb:hb (3.4) BS01 rna ? GO:0003735 ... Q5I7K2 38267667
    829043 8ipb:ia (3.4) BS01 rna ? GO:0003723 ... Q8L804 38267667
    829044 8ipb:ib (3.4) BS01 rna ? GO:0003735 ... W5BFB7 38267667
    829045 8ipb:ja (3.4) BS01 rna ? GO:0003723 ... A0A1D5SLI4 38267667
    829046 8ipb:ka (3.4) BS01 rna ? GO:0000028 ... W5D067 38267667
    829047 8ipb:ka (3.4) BS02 MG ? GO:0000028 ... W5D067 38267667
    829048 8ipb:la (3.4) BS01 rna ? GO:0000462 ... A0A3B6HX49 38267667
    829049 8ipb:ma (3.4) BS01 rna ? GO:0003735 ... U5HTD8 38267667
    829050 8ipb:na (3.4) BS01 rna ? GO:0000028 ... A0A3B6SS17 38267667
    829051 8ipb:oa (3.4) BS01 rna ? GO:0003676 ... Q8L806 38267667
    829052 8ipb:pa (3.4) BS01 rna ? GO:0003735 ... Q5XUU9 38267667
    829053 8ipb:pa (3.4) BS02 rna ? GO:0003735 ... Q5XUU9 38267667
    829054 8ipb:qa (3.4) BS01 rna ? GO:0003735 ... A0A3B5YWZ3 38267667
    829055 8ipb:ra (3.4) BS01 rna ? GO:0003735 ... W5FWF5 38267667
    829056 8ipb:sa (3.4) BS01 rna ? GO:0000028 ... W5ASA4 38267667
    829057 8ipb:ta (3.4) BS01 rna ? GO:0003735 ... W5EP45 38267667
    829058 8ipb:ua (3.4) BS01 rna ? GO:0003735 ... Q7X9K4 38267667
    829059 8ipb:va (3.4) BS01 rna ? GO:0003735 ... A0A077RZD1 38267667
    829060 8ipb:wa (3.4) BS01 rna ? GO:0002181 ... Q5I7K3 38267667
    829061 8ipb:wa (3.4) BS02 ZN ? GO:0002181 ... Q5I7K3 38267667
    829062 8ipb:xa (3.4) BS01 rna ? GO:0000028 ... W5HZ68 38267667
    829063 8ipb:ya (3.4) BS01 rna ? GO:0003735 ... A0A3B6S9M7 38267667
    829064 8ipb:za (3.4) BS01 rna ? GO:0000028 ... W5E2W7 38267667
    829065 8ipd:4 (3.2) BS01 rna ? GO:0000079 ... Q9BZE4 37491604
    829066 8ipd:4 (3.2) BS02 rna ? GO:0000079 ... Q9BZE4 37491604
    829067 8ipd:6 (3.2) BS01 rna ? GO:0000054 ... P56537 37491604
    829068 8ipd:7 (3.2) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    829069 8ipd:9 (3.2) BS01 rna ? GO:0003676 ... O00488 37491604
    829070 8ipd:A (3.2) BS01 rna ? GO:0002181 ... P47914 37491604
    829071 8ipd:B (3.2) BS01 rna ? GO:0002181 ... P39023 37491604
    829072 8ipd:C (3.2) BS01 rna ? GO:0000027 ... P62913 37491604
    829073 8ipd:C (3.2) BS02 rna ? GO:0000027 ... P62913 37491604
    829074 8ipd:D (3.2) BS01 rna ? GO:0002181 ... P36578 37491604
    829075 8ipd:D (3.2) BS02 rna ? GO:0002181 ... P36578 37491604
    829076 8ipd:E (3.2) BS01 rna ? GO:0002181 ... P62888 37491604
    829077 8ipd:F (3.2) BS01 rna ? GO:0002181 ... P49207 37491604
    829078 8ipd:G (3.2) BS01 rna ? GO:0000470 ... P62424 37491604
    829079 8ipd:G (3.2) BS02 rna ? GO:0000470 ... P62424 37491604
    829080 8ipd:H (3.2) BS01 rna ? GO:0000463 ... P42766 37491604
    829081 8ipd:H (3.2) BS02 rna ? GO:0000463 ... P42766 37491604
    829082 8ipd:I (3.2) BS01 rna ? GO:0002181 ... P32969 37491604
    829083 8ipd:J (3.2) BS01 rna ? GO:0000460 ... O95478 37491604
    829084 8ipd:K (3.2) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    829085 8ipd:L (3.2) BS01 rna ? GO:0002181 ... P46776 37491604
    829086 8ipd:M (3.2) BS01 rna ? GO:0002181 ... P61927 37491604
    829087 8ipd:M (3.2) BS02 rna ? GO:0002181 ... P61927 37491604
    829088 8ipd:O (3.2) BS01 rna ? GO:0001501 ... P63173 37491604
    829089 8ipd:P (3.2) BS01 rna ? GO:0002181 ... P62891 37491604
    829090 8ipd:P (3.2) BS02 rna ? GO:0002181 ... P62891 37491604
    829091 8ipd:Q (3.2) BS01 rna ? GO:0001824 ... P26373 37491604
    829092 8ipd:Q (3.2) BS02 rna ? GO:0001824 ... P26373 37491604
    829093 8ipd:R (3.2) BS01 rna ? GO:0000027 ... P46777 37491604
    829094 8ipd:R (3.2) BS02 rna ? GO:0000027 ... P46777 37491604
    829095 8ipd:S (3.2) BS01 rna ? GO:0002181 ... P50914 37491604
    829096 8ipd:T (3.2) BS01 rna ? GO:0002181 ... P46778 37491604
    829097 8ipd:T (3.2) BS02 rna ? GO:0002181 ... P46778 37491604
    829098 8ipd:U (3.2) BS01 rna ? GO:0002181 ... P61313 37491604
    829099 8ipd:U (3.2) BS02 rna ? GO:0002181 ... P61313 37491604
    829100 8ipd:V (3.2) BS01 rna ? GO:0002181 ... P40429 37491604
    829101 8ipd:X (3.2) BS01 rna ? GO:0002181 ... P61513 37491604
    829102 8ipd:Y (3.2) BS01 rna ? GO:0002181 ... P18621 37491604
    829103 8ipd:Y (3.2) BS02 rna ? GO:0002181 ... P18621 37491604
    829104 8ipd:Z (3.2) BS01 rna ? GO:0002181 ... Q07020 37491604
    829105 8ipd:a (3.2) BS01 rna ? GO:0002181 ... P84098 37491604
    829106 8ipd:b (3.2) BS01 rna ? GO:0002181 ... Q02543 37491604
    829107 8ipd:b (3.2) BS02 rna ? GO:0002181 ... Q02543 37491604
    829108 8ipd:d (3.2) BS01 rna ? GO:0002181 ... P35268 37491604
    829109 8ipd:e (3.2) BS01 rna ? GO:0000122 ... P62829 37491604
    829110 8ipd:g (3.2) BS01 rna ? GO:0002181 ... P62750 37491604
    829111 8ipd:g (3.2) BS02 rna ? GO:0002181 ... P62750 37491604
    829112 8ipd:h (3.2) BS01 rna ? GO:0002181 ... P61254 37491604
    829113 8ipd:h (3.2) BS02 rna ? GO:0002181 ... P61254 37491604
    829114 8ipd:i (3.2) BS01 rna ? GO:0002181 ... P61353 37491604
    829115 8ipd:j (3.2) BS01 rna ? GO:0002181 ... P62899 37491604
    829116 8ipd:k (3.2) BS01 rna ? GO:0002181 ... P62910 37491604
    829117 8ipd:l (3.2) BS01 rna ? GO:0002181 ... P46779 37491604
    829118 8ipd:m (3.2) BS01 rna ? GO:0002181 ... P62917 37491604
    829119 8ipd:n (3.2) BS01 rna ? GO:0000049 ... P18077 37491604
    829120 8ipd:o (3.2) BS01 rna ? GO:0002181 ... Q02878 37491604
    829121 8ipd:p (3.2) BS01 rna ? GO:0000463 ... P18124 37491604
    829122 8ipd:p (3.2) BS02 rna ? GO:0000463 ... P18124 37491604
    829123 8ipd:r (3.2) BS01 rna ? GO:0003723 ... Q9H6F5 37491604
    829124 8ipd:r (3.2) BS02 rna ? GO:0003723 ... Q9H6F5 37491604
    829125 8ipd:u (3.2) BS01 rna ? GO:0003723 ... Q9BVP2 37491604
    829126 8ipd:u (3.2) BS02 rna ? GO:0003723 ... Q9BVP2 37491604
    829127 8ipd:v (3.2) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    829128 8ipd:w (3.2) BS01 rna ? GO:0003723 ... Q13823 37491604
    829129 8ipd:w (3.2) BS02 GTP ? GO:0003723 ... Q13823 37491604
    829130 8ipd:y (3.2) BS01 rna ? GO:0002181 ... P30050 37491604
    829131 8ipd:z (3.2) BS01 rna ? GO:0001099 ... Q9BRT6 37491604
    829132 8ipj:A (2.003) BS01 AR6 ? N/A Q5ZSJ1 N/A
    829133 8ipj:B (2.003) BS01 AR6 ? N/A P62987 N/A
    829134 8ipk:A (1.9) BS01 SAM 2.1.1.- GO:0008168 ... A6NJ78 38291322
    829135 8ipl:A (2.2) BS01 peptide 2.1.1.- GO:0008168 ... A6NJ78 38291322
    829136 8ipl:A (2.2) BS02 SAM 2.1.1.- GO:0008168 ... A6NJ78 38291322
    829137 8ipm:D (3.1) BS01 peptide 2.1.1.- GO:0008168 ... A6NJ78 38291322
    829138 8ipm:D (3.1) BS02 rna 2.1.1.- GO:0008168 ... A6NJ78 38291322
    829139 8ipm:D (3.1) BS03 SFG 2.1.1.- GO:0008168 ... A6NJ78 38291322
    829140 8ipp:B (2.007) BS01 dna N/A N/A N/A 38738955
    829141 8ipp:B (2.007) BS02 MG N/A N/A N/A 38738955
    829142 8ipp:B (2.007) BS03 MG N/A N/A N/A 38738955
    829143 8ipr:A (3.0) BS01 ATP ? GO:0005524 ... A4ZHS8 37144855
    829144 8ipr:A (3.0) BS02 ATP ? GO:0005524 ... A4ZHS8 37144855
    829145 8ipr:C (3.0) BS01 ATP 3.6.3.25 GO:0005524 ... A0QXA6 37144855
    829146 8ipr:C (3.0) BS02 MG 3.6.3.25 GO:0005524 ... A0QXA6 37144855
    829147 8ipr:C (3.0) BS03 ATP 3.6.3.25 GO:0005524 ... A0QXA6 37144855
    829148 8ipr:D (3.0) BS01 ATP ? GO:0005524 ... A4ZHS8 37144855
    829149 8ipr:D (3.0) BS02 ATP ? GO:0005524 ... A4ZHS8 37144855
    829150 8ipr:E (3.0) BS01 ATP 3.6.3.25 GO:0005524 ... A0QXA6 37144855
    829151 8ipr:E (3.0) BS02 MG 3.6.3.25 GO:0005524 ... A0QXA6 37144855
    829152 8ipr:E (3.0) BS03 ATP 3.6.3.25 GO:0005524 ... A0QXA6 37144855
    829153 8ips:A (3.6) BS01 HEM 7.4.2.- GO:0005524 ... P23886 37144855
    829154 8ips:B (3.6) BS01 HEM 7.4.2.- GO:0005524 ... P29018 37144855
    829155 8ipt:A (3.5) BS01 ATP 7.4.2.- GO:0005524 ... P29018 37144855
    829156 8ipt:A (3.5) BS02 ATP 7.4.2.- GO:0005524 ... P29018 37144855
    829157 8ipt:C (3.5) BS01 ATP 7.4.2.- GO:0005524 ... P23886 37144855
    829158 8ipt:C (3.5) BS02 ATP 7.4.2.- GO:0005524 ... P23886 37144855
    829159 8ipt:D (3.5) BS01 ATP 7.4.2.- GO:0005524 ... P23886 37144855
    829160 8ipt:D (3.5) BS02 ATP 7.4.2.- GO:0005524 ... P23886 37144855
    829161 8ipt:E (3.5) BS01 ATP 7.4.2.- GO:0005524 ... P29018 37144855
    829162 8ipt:E (3.5) BS02 ATP 7.4.2.- GO:0005524 ... P29018 37144855
    829163 8ipw:A (2.35) BS01 AR6 ? N/A Q5ZSJ1 N/A
    829164 8ipw:B (2.35) BS01 AR6 ? N/A Q5ZSJ1 N/A
    829165 8ipx:1 (4.3) BS01 rna ? GO:0000463 ... Q6DKI1 37491604
    829166 8ipx:1 (4.3) BS02 rna ? GO:0000463 ... Q6DKI1 37491604
    829167 8ipx:4 (4.3) BS01 rna ? GO:0000079 ... Q9BZE4 37491604
    829168 8ipx:4 (4.3) BS02 rna ? GO:0000079 ... Q9BZE4 37491604
    829169 8ipx:6 (4.3) BS01 rna ? GO:0000054 ... P56537 37491604
    829170 8ipx:7 (4.3) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    829171 8ipx:9 (4.3) BS01 rna ? GO:0003676 ... O00488 37491604
    829172 8ipx:A (4.3) BS01 rna ? GO:0002181 ... P47914 37491604
    829173 8ipx:B (4.3) BS01 rna ? GO:0002181 ... P39023 37491604
    829174 8ipx:C (4.3) BS01 rna ? GO:0000027 ... P62913 37491604
    829175 8ipx:C (4.3) BS02 rna ? GO:0000027 ... P62913 37491604
    829176 8ipx:D (4.3) BS01 rna ? GO:0002181 ... P36578 37491604
    829177 8ipx:D (4.3) BS02 rna ? GO:0002181 ... P36578 37491604
    829178 8ipx:E (4.3) BS01 rna ? GO:0002181 ... P62888 37491604
    829179 8ipx:F (4.3) BS01 rna ? GO:0002181 ... P49207 37491604
    829180 8ipx:G (4.3) BS01 rna ? GO:0000470 ... P62424 37491604
    829181 8ipx:G (4.3) BS02 rna ? GO:0000470 ... P62424 37491604
    829182 8ipx:H (4.3) BS01 rna ? GO:0000463 ... P42766 37491604
    829183 8ipx:H (4.3) BS02 rna ? GO:0000463 ... P42766 37491604
    829184 8ipx:I (4.3) BS01 rna ? GO:0002181 ... P32969 37491604
    829185 8ipx:J (4.3) BS01 rna ? GO:0000460 ... O95478 37491604
    829186 8ipx:K (4.3) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    829187 8ipx:L (4.3) BS01 rna ? GO:0002181 ... P46776 37491604
    829188 8ipx:M (4.3) BS01 rna ? GO:0002181 ... P61927 37491604
    829189 8ipx:M (4.3) BS02 rna ? GO:0002181 ... P61927 37491604
    829190 8ipx:N (4.3) BS01 rna ? GO:0001649 ... O76021 37491604
    829191 8ipx:O (4.3) BS01 rna ? GO:0001501 ... P63173 37491604
    829192 8ipx:P (4.3) BS01 rna ? GO:0002181 ... P62891 37491604
    829193 8ipx:P (4.3) BS02 rna ? GO:0002181 ... P62891 37491604
    829194 8ipx:Q (4.3) BS01 rna ? GO:0001824 ... P26373 37491604
    829195 8ipx:Q (4.3) BS02 rna ? GO:0001824 ... P26373 37491604
    829196 8ipx:R (4.3) BS01 rna ? GO:0000027 ... P46777 37491604
    829197 8ipx:R (4.3) BS02 rna ? GO:0000027 ... P46777 37491604
    829198 8ipx:S (4.3) BS01 rna ? GO:0002181 ... P50914 37491604
    829199 8ipx:T (4.3) BS01 rna ? GO:0002181 ... P46778 37491604
    829200 8ipx:T (4.3) BS02 rna ? GO:0002181 ... P46778 37491604

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).