SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    829201 8ipx:U (4.3) BS01 rna ? GO:0002181 ... P61313 37491604
    829202 8ipx:U (4.3) BS02 rna ? GO:0002181 ... P61313 37491604
    829203 8ipx:V (4.3) BS01 rna ? GO:0002181 ... P40429 37491604
    829204 8ipx:W (4.3) BS01 rna ? GO:0000278 ... Q9NVX2 37491604
    829205 8ipx:X (4.3) BS01 rna ? GO:0002181 ... P61513 37491604
    829206 8ipx:Y (4.3) BS01 rna ? GO:0002181 ... P18621 37491604
    829207 8ipx:Y (4.3) BS02 rna ? GO:0002181 ... P18621 37491604
    829208 8ipx:Z (4.3) BS01 rna ? GO:0002181 ... Q07020 37491604
    829209 8ipx:a (4.3) BS01 rna ? GO:0002181 ... P84098 37491604
    829210 8ipx:b (4.3) BS01 rna ? GO:0002181 ... Q02543 37491604
    829211 8ipx:b (4.3) BS02 rna ? GO:0002181 ... Q02543 37491604
    829212 8ipx:d (4.3) BS01 rna ? GO:0002181 ... P35268 37491604
    829213 8ipx:e (4.3) BS01 rna ? GO:0000122 ... P62829 37491604
    829214 8ipx:f (4.3) BS01 rna ? GO:0000027 ... Q9NZM5 37491604
    829215 8ipx:f (4.3) BS02 rna ? GO:0000027 ... Q9NZM5 37491604
    829216 8ipx:g (4.3) BS01 rna ? GO:0002181 ... P62750 37491604
    829217 8ipx:g (4.3) BS02 rna ? GO:0002181 ... P62750 37491604
    829218 8ipx:h (4.3) BS01 rna ? GO:0002181 ... P61254 37491604
    829219 8ipx:h (4.3) BS02 rna ? GO:0002181 ... P61254 37491604
    829220 8ipx:i (4.3) BS01 rna ? GO:0002181 ... P61353 37491604
    829221 8ipx:j (4.3) BS01 rna ? GO:0002181 ... P62899 37491604
    829222 8ipx:k (4.3) BS01 rna ? GO:0002181 ... P62910 37491604
    829223 8ipx:l (4.3) BS01 rna ? GO:0002181 ... P46779 37491604
    829224 8ipx:m (4.3) BS01 rna ? GO:0002181 ... P62917 37491604
    829225 8ipx:n (4.3) BS01 rna ? GO:0000049 ... P18077 37491604
    829226 8ipx:o (4.3) BS01 rna ? GO:0002181 ... Q02878 37491604
    829227 8ipx:p (4.3) BS01 rna ? GO:0000463 ... P18124 37491604
    829228 8ipx:p (4.3) BS02 rna ? GO:0000463 ... P18124 37491604
    829229 8ipx:q (4.3) BS01 rna ? GO:0000463 ... O00541 37491604
    829230 8ipx:q (4.3) BS02 rna ? GO:0000463 ... O00541 37491604
    829231 8ipx:r (4.3) BS01 rna ? GO:0003723 ... Q9H6F5 37491604
    829232 8ipx:r (4.3) BS02 rna ? GO:0003723 ... Q9H6F5 37491604
    829233 8ipx:t (4.3) BS01 rna ? GO:0000794 ... Q9BYG3 37491604
    829234 8ipx:u (4.3) BS01 rna ? GO:0003723 ... Q9BVP2 37491604
    829235 8ipx:v (4.3) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    829236 8ipx:w (4.3) BS01 rna ? GO:0003723 ... Q13823 37491604
    829237 8ipx:w (4.3) BS02 GTP ? GO:0003723 ... Q13823 37491604
    829238 8ipx:y (4.3) BS01 rna ? GO:0002181 ... P30050 37491604
    829239 8ipx:z (4.3) BS01 rna ? GO:0001099 ... Q9BRT6 37491604
    829240 8ipy:1 (3.2) BS01 rna ? GO:0000463 ... Q6DKI1 37491604
    829241 8ipy:1 (3.2) BS02 rna ? GO:0000463 ... Q6DKI1 37491604
    829242 8ipy:4 (3.2) BS01 rna ? GO:0000079 ... Q9BZE4 37491604
    829243 8ipy:4 (3.2) BS02 rna ? GO:0000079 ... Q9BZE4 37491604
    829244 8ipy:6 (3.2) BS01 rna ? GO:0000054 ... P56537 37491604
    829245 8ipy:7 (3.2) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    829246 8ipy:9 (3.2) BS01 rna ? GO:0003676 ... O00488 37491604
    829247 8ipy:A (3.2) BS01 rna ? GO:0002181 ... P47914 37491604
    829248 8ipy:B (3.2) BS01 rna ? GO:0002181 ... P39023 37491604
    829249 8ipy:C (3.2) BS01 rna ? GO:0000027 ... P62913 37491604
    829250 8ipy:C (3.2) BS02 rna ? GO:0000027 ... P62913 37491604
    829251 8ipy:D (3.2) BS01 rna ? GO:0002181 ... P36578 37491604
    829252 8ipy:D (3.2) BS02 rna ? GO:0002181 ... P36578 37491604
    829253 8ipy:E (3.2) BS01 rna ? GO:0002181 ... P62888 37491604
    829254 8ipy:F (3.2) BS01 rna ? GO:0002181 ... P49207 37491604
    829255 8ipy:G (3.2) BS01 rna ? GO:0000470 ... P62424 37491604
    829256 8ipy:G (3.2) BS02 rna ? GO:0000470 ... P62424 37491604
    829257 8ipy:H (3.2) BS01 rna ? GO:0000463 ... P42766 37491604
    829258 8ipy:H (3.2) BS02 rna ? GO:0000463 ... P42766 37491604
    829259 8ipy:I (3.2) BS01 rna ? GO:0002181 ... P32969 37491604
    829260 8ipy:J (3.2) BS01 rna ? GO:0000460 ... O95478 37491604
    829261 8ipy:K (3.2) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    829262 8ipy:L (3.2) BS01 rna ? GO:0002181 ... P46776 37491604
    829263 8ipy:M (3.2) BS01 rna ? GO:0002181 ... P61927 37491604
    829264 8ipy:M (3.2) BS02 rna ? GO:0002181 ... P61927 37491604
    829265 8ipy:N (3.2) BS01 rna ? GO:0000055 ... Q9NVU7 37491604
    829266 8ipy:O (3.2) BS01 rna ? GO:0001501 ... P63173 37491604
    829267 8ipy:P (3.2) BS01 rna ? GO:0002181 ... P62891 37491604
    829268 8ipy:P (3.2) BS02 rna ? GO:0002181 ... P62891 37491604
    829269 8ipy:Q (3.2) BS01 rna ? GO:0001824 ... P26373 37491604
    829270 8ipy:Q (3.2) BS02 rna ? GO:0001824 ... P26373 37491604
    829271 8ipy:R (3.2) BS01 rna ? GO:0000027 ... P46777 37491604
    829272 8ipy:R (3.2) BS02 rna ? GO:0000027 ... P46777 37491604
    829273 8ipy:S (3.2) BS01 rna ? GO:0002181 ... P50914 37491604
    829274 8ipy:T (3.2) BS01 rna ? GO:0002181 ... P46778 37491604
    829275 8ipy:T (3.2) BS02 rna ? GO:0002181 ... P46778 37491604
    829276 8ipy:U (3.2) BS01 rna ? GO:0002181 ... P61313 37491604
    829277 8ipy:U (3.2) BS02 rna ? GO:0002181 ... P61313 37491604
    829278 8ipy:V (3.2) BS01 rna ? GO:0002181 ... P40429 37491604
    829279 8ipy:W (3.2) BS01 rna ? GO:0000278 ... Q9NVX2 37491604
    829280 8ipy:X (3.2) BS01 rna ? GO:0002181 ... P61513 37491604
    829281 8ipy:Y (3.2) BS01 rna ? GO:0002181 ... P18621 37491604
    829282 8ipy:Y (3.2) BS02 rna ? GO:0002181 ... P18621 37491604
    829283 8ipy:Z (3.2) BS01 rna ? GO:0002181 ... Q07020 37491604
    829284 8ipy:a (3.2) BS01 rna ? GO:0002181 ... P84098 37491604
    829285 8ipy:b (3.2) BS01 rna ? GO:0002181 ... Q02543 37491604
    829286 8ipy:b (3.2) BS02 rna ? GO:0002181 ... Q02543 37491604
    829287 8ipy:c (3.2) BS01 rna ? GO:0001649 ... O76021 37491604
    829288 8ipy:d (3.2) BS01 rna ? GO:0002181 ... P35268 37491604
    829289 8ipy:e (3.2) BS01 rna ? GO:0000122 ... P62829 37491604
    829290 8ipy:f (3.2) BS01 rna ? GO:0000027 ... Q9NZM5 37491604
    829291 8ipy:f (3.2) BS02 rna ? GO:0000027 ... Q9NZM5 37491604
    829292 8ipy:g (3.2) BS01 rna ? GO:0002181 ... P62750 37491604
    829293 8ipy:g (3.2) BS02 rna ? GO:0002181 ... P62750 37491604
    829294 8ipy:h (3.2) BS01 rna ? GO:0002181 ... P61254 37491604
    829295 8ipy:h (3.2) BS02 rna ? GO:0002181 ... P61254 37491604
    829296 8ipy:i (3.2) BS01 rna ? GO:0002181 ... P61353 37491604
    829297 8ipy:j (3.2) BS01 rna ? GO:0002181 ... P62899 37491604
    829298 8ipy:k (3.2) BS01 rna ? GO:0002181 ... P62910 37491604
    829299 8ipy:l (3.2) BS01 rna ? GO:0002181 ... P46779 37491604
    829300 8ipy:m (3.2) BS01 rna ? GO:0002181 ... P62917 37491604
    829301 8ipy:n (3.2) BS01 rna ? GO:0000049 ... P18077 37491604
    829302 8ipy:o (3.2) BS01 rna ? GO:0002181 ... Q02878 37491604
    829303 8ipy:p (3.2) BS01 rna ? GO:0000463 ... P18124 37491604
    829304 8ipy:p (3.2) BS02 rna ? GO:0000463 ... P18124 37491604
    829305 8ipy:q (3.2) BS01 rna ? GO:0000463 ... O00541 37491604
    829306 8ipy:q (3.2) BS02 rna ? GO:0000463 ... O00541 37491604
    829307 8ipy:r (3.2) BS01 rna ? GO:0003723 ... Q9H6F5 37491604
    829308 8ipy:r (3.2) BS02 rna ? GO:0003723 ... Q9H6F5 37491604
    829309 8ipy:t (3.2) BS01 rna ? GO:0000794 ... Q9BYG3 37491604
    829310 8ipy:u (3.2) BS01 rna ? GO:0003723 ... Q9BVP2 37491604
    829311 8ipy:v (3.2) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    829312 8ipy:w (3.2) BS01 rna ? GO:0003723 ... Q13823 37491604
    829313 8ipy:w (3.2) BS02 GTP ? GO:0003723 ... Q13823 37491604
    829314 8ipy:y (3.2) BS01 rna ? GO:0002181 ... P30050 37491604
    829315 8ipy:z (3.2) BS01 rna ? GO:0001099 ... Q9BRT6 37491604
    829316 8iq0:A (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829317 8iq0:A (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829318 8iq0:B (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829319 8iq0:B (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829320 8iq0:C (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829321 8iq0:C (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829322 8iq0:D (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829323 8iq0:D (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829324 8iq0:E (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829325 8iq0:E (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829326 8iq0:F (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829327 8iq0:F (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829328 8iq0:G (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829329 8iq0:G (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829330 8iq0:H (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829331 8iq0:H (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829332 8iq0:I (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829333 8iq0:I (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829334 8iq0:J (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829335 8iq0:J (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829336 8iq0:K (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829337 8iq0:K (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829338 8iq0:L (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829339 8iq0:L (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829340 8iq0:M (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829341 8iq0:M (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829342 8iq0:M (1.88) BS03 H2S 1.15.1.1 GO:0000209 ... P00442 37421623
    829343 8iq0:N (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829344 8iq0:N (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829345 8iq0:O (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829346 8iq0:O (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829347 8iq0:P (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829348 8iq0:P (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829349 8iq1:A (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829350 8iq1:A (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829351 8iq1:B (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829352 8iq1:B (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829353 8iq1:B (1.8) BS03 H2S 1.15.1.1 GO:0000209 ... P00442 37421623
    829354 8iq1:C (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829355 8iq1:C (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829356 8iq1:D (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829357 8iq1:D (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829358 8iq1:E (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829359 8iq1:E (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829360 8iq1:E (1.8) BS03 H2S 1.15.1.1 GO:0000209 ... P00442 37421623
    829361 8iq1:F (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829362 8iq1:F (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829363 8iq1:G (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829364 8iq1:G (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829365 8iq1:H (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    829366 8iq1:H (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    829367 8iq4:R (2.7) BS01 87Q ? GO:0004930 ... P43088 38065938
    829368 8iq6:R (3.4) BS01 7WT ? GO:0004930 ... P43088 38065938
    829369 8iq9:A (1.58) BS01 GCU ? N/A A0A6M3YLW2 38349137
    829370 8iq9:A (1.58) BS02 BGC ? N/A A0A6M3YLW2 38349137
    829371 8iq9:A (1.58) BS03 GLC ? N/A A0A6M3YLW2 38349137
    829372 8iq9:A (1.58) BS04 BGC ? N/A A0A6M3YLW2 38349137
    829373 8iq9:A (1.58) BS05 GLC ? N/A A0A6M3YLW2 38349137
    829374 8iq9:A (1.58) BS06 BGC ? N/A A0A6M3YLW2 38349137
    829375 8iq9:A (1.58) BS07 BMA ? N/A A0A6M3YLW2 38349137
    829376 8iq9:A (1.58) BS08 GCU ? N/A A0A6M3YLW2 38349137
    829377 8iq9:B (1.58) BS01 BGC ? N/A A0A6M3YLW2 38349137
    829378 8iq9:B (1.58) BS02 GCU ? N/A A0A6M3YLW2 38349137
    829379 8iq9:B (1.58) BS03 BGC ? N/A A0A6M3YLW2 38349137
    829380 8iq9:B (1.58) BS04 GLC ? N/A A0A6M3YLW2 38349137
    829381 8iq9:B (1.58) BS05 BGC ? N/A A0A6M3YLW2 38349137
    829382 8iq9:B (1.58) BS06 GLC ? N/A A0A6M3YLW2 38349137
    829383 8iq9:B (1.58) BS07 BMA ? N/A A0A6M3YLW2 38349137
    829384 8iq9:B (1.58) BS08 GCU ? N/A A0A6M3YLW2 38349137
    829385 8iq9:C (1.58) BS01 GLC ? N/A A0A6M3YLW2 38349137
    829386 8iq9:C (1.58) BS02 BGC ? N/A A0A6M3YLW2 38349137
    829387 8iq9:C (1.58) BS03 GLC ? N/A A0A6M3YLW2 38349137
    829388 8iq9:C (1.58) BS04 BMA ? N/A A0A6M3YLW2 38349137
    829389 8iq9:C (1.58) BS05 GCU ? N/A A0A6M3YLW2 38349137
    829390 8iq9:C (1.58) BS06 BGC ? N/A A0A6M3YLW2 38349137
    829391 8iq9:C (1.58) BS07 GLC ? N/A A0A6M3YLW2 38349137
    829392 8iqc:A (2.0) BS01 MN ? N/A A0A0C5B022 37587714
    829393 8iqc:A (2.0) BS02 MN ? N/A A0A0C5B022 37587714
    829394 8iqc:B (2.0) BS01 MN ? N/A A0A0C5B022 37587714
    829395 8iqc:B (2.0) BS02 MN ? N/A A0A0C5B022 37587714
    829396 8iqd:A (2.39) BS01 MN ? N/A A0A0C5B022 37587714
    829397 8iqd:A (2.39) BS02 MN ? N/A A0A0C5B022 37587714
    829398 8iqd:A (2.39) BS03 DCP ? N/A A0A0C5B022 37587714
    829399 8iqd:B (2.39) BS01 MN ? N/A A0A0C5B022 37587714
    829400 8iqd:B (2.39) BS02 MN ? N/A A0A0C5B022 37587714

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).