SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    829401 8iqd:B (2.39) BS03 DCP ? N/A A0A0C5B022 37587714
    829402 8iqd:C (2.39) BS01 MN ? N/A A0A0C5B022 37587714
    829403 8iqd:C (2.39) BS02 MN ? N/A A0A0C5B022 37587714
    829404 8iqd:C (2.39) BS03 DCP ? N/A A0A0C5B022 37587714
    829405 8iqd:D (2.39) BS01 MN ? N/A A0A0C5B022 37587714
    829406 8iqd:D (2.39) BS02 MN ? N/A A0A0C5B022 37587714
    829407 8iqd:D (2.39) BS03 DCP ? N/A A0A0C5B022 37587714
    829408 8iqi:A (3.32) BS01 dna ? GO:0004386 ... A0A0C5B022 37587714
    829409 8iqi:A (3.32) BS02 ANP ? GO:0004386 ... A0A0C5B022 37587714
    829410 8iqi:B (3.32) BS01 dna ? GO:0004386 ... A0A0C5B022 37587714
    829411 8iqi:B (3.32) BS02 ANP ? GO:0004386 ... A0A0C5B022 37587714
    829412 8iqi:B (3.32) BS03 ANP ? GO:0004386 ... A0A0C5B022 37587714
    829413 8iqi:C (3.32) BS01 dna ? GO:0004386 ... A0A0C5B022 37587714
    829414 8iqi:C (3.32) BS02 ANP ? GO:0004386 ... A0A0C5B022 37587714
    829415 8iqi:C (3.32) BS03 ANP ? GO:0004386 ... A0A0C5B022 37587714
    829416 8iqi:D (3.32) BS01 dna ? GO:0004386 ... A0A0C5B022 37587714
    829417 8iqi:D (3.32) BS02 ANP ? GO:0004386 ... A0A0C5B022 37587714
    829418 8iqi:D (3.32) BS03 ANP ? GO:0004386 ... A0A0C5B022 37587714
    829419 8iqi:E (3.32) BS01 dna ? GO:0004386 ... A0A0C5B022 37587714
    829420 8iqi:E (3.32) BS02 ANP ? GO:0004386 ... A0A0C5B022 37587714
    829421 8iqi:F (3.32) BS01 dna ? GO:0004386 ... A0A0C5B022 37587714
    829422 8iqi:F (3.32) BS02 ANP ? GO:0004386 ... A0A0C5B022 37587714
    829423 8iqk:A (2.879) BS01 peptide ? GO:0042981 ... Q07817 37560128
    829424 8iqk:C (2.879) BS01 peptide ? GO:0042981 ... Q07817 37560128
    829425 8iqk:E (2.879) BS01 peptide ? GO:0042981 ... Q07817 37560128
    829426 8iqk:G (2.879) BS01 peptide ? GO:0042981 ... Q07817 37560128
    829427 8iql:A (2.9577) BS01 peptide ? GO:0042981 ... P10415
    Q07817
    37560128
    829428 8iql:C (2.9577) BS01 peptide ? GO:0042981 ... P10415
    Q07817
    37560128
    829429 8iqm:A (1.967) BS01 peptide ? GO:0042981 ... Q07820 37560128
    829430 8iqn:A (1.639) BS01 SRF ? GO:0003677 ... P11473 N/A
    829431 8iqr:H (2.35) BS01 HZA N/A GO:0004674 ... N/A N/A
    829432 8iqr:h (2.35) BS01 HZA N/A GO:0004674 ... N/A N/A
    829433 8iqt:A (1.745) BS01 SV0 ? GO:0003677 ... P11473 N/A
    829434 8iqu:A (2.64) BS01 649 6.2.1.57 GO:0005524 ... P9WQ47 37522751
    829435 8ir1:4 (3.3) BS01 rna ? GO:0000079 ... Q9BZE4 37491604
    829436 8ir1:4 (3.3) BS02 rna ? GO:0000079 ... Q9BZE4 37491604
    829437 8ir1:6 (3.3) BS01 rna ? GO:0000054 ... P56537 37491604
    829438 8ir1:7 (3.3) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    829439 8ir1:9 (3.3) BS01 rna 2.1.1.- GO:0000463 ... Q8IY81 37491604
    829440 8ir1:A (3.3) BS01 rna ? GO:0000027 ... P62913 37491604
    829441 8ir1:A (3.3) BS02 rna ? GO:0000027 ... P62913 37491604
    829442 8ir1:B (3.3) BS01 rna ? GO:0002181 ... P39023 37491604
    829443 8ir1:C (3.3) BS01 rna ? GO:0000027 ... P46777 37491604
    829444 8ir1:C (3.3) BS02 rna ? GO:0000027 ... P46777 37491604
    829445 8ir1:D (3.3) BS01 rna ? GO:0002181 ... P36578 37491604
    829446 8ir1:D (3.3) BS02 rna ? GO:0002181 ... P36578 37491604
    829447 8ir1:E (3.3) BS01 rna ? GO:0002181 ... P62888 37491604
    829448 8ir1:F (3.3) BS01 rna ? GO:0002181 ... P49207 37491604
    829449 8ir1:G (3.3) BS01 rna ? GO:0000470 ... P62424 37491604
    829450 8ir1:G (3.3) BS02 rna ? GO:0000470 ... P62424 37491604
    829451 8ir1:H (3.3) BS01 rna ? GO:0000463 ... P42766 37491604
    829452 8ir1:H (3.3) BS02 rna ? GO:0000463 ... P42766 37491604
    829453 8ir1:I (3.3) BS01 rna ? GO:0002181 ... P32969 37491604
    829454 8ir1:J (3.3) BS01 rna ? GO:0000460 ... O95478 37491604
    829455 8ir1:K (3.3) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    829456 8ir1:L (3.3) BS01 rna ? GO:0002181 ... P46776 37491604
    829457 8ir1:M (3.3) BS01 rna ? GO:0002181 ... P61927 37491604
    829458 8ir1:M (3.3) BS02 rna ? GO:0002181 ... P61927 37491604
    829459 8ir1:O (3.3) BS01 rna ? GO:0001501 ... P63173 37491604
    829460 8ir1:P (3.3) BS01 rna ? GO:0002181 ... P62891 37491604
    829461 8ir1:P (3.3) BS02 rna ? GO:0002181 ... P62891 37491604
    829462 8ir1:Q (3.3) BS01 rna ? GO:0001824 ... P26373 37491604
    829463 8ir1:Q (3.3) BS02 rna ? GO:0001824 ... P26373 37491604
    829464 8ir1:R (3.3) BS01 rna ? GO:0000027 ... Q15050 37491604
    829465 8ir1:S (3.3) BS01 rna ? GO:0002181 ... P50914 37491604
    829466 8ir1:T (3.3) BS01 rna ? GO:0000027 ... Q9H7B2 37491604
    829467 8ir1:T (3.3) BS02 rna ? GO:0000027 ... Q9H7B2 37491604
    829468 8ir1:U (3.3) BS01 rna ? GO:0002181 ... P61313 37491604
    829469 8ir1:U (3.3) BS02 rna ? GO:0002181 ... P61313 37491604
    829470 8ir1:V (3.3) BS01 rna ? GO:0002181 ... P40429 37491604
    829471 8ir1:X (3.3) BS01 rna ? GO:0002181 ... P61513 37491604
    829472 8ir1:Y (3.3) BS01 rna ? GO:0002181 ... P18621 37491604
    829473 8ir1:Y (3.3) BS02 rna ? GO:0002181 ... P18621 37491604
    829474 8ir1:Z (3.3) BS01 rna ? GO:0002181 ... Q07020 37491604
    829475 8ir1:a (3.3) BS01 rna ? GO:0002181 ... P84098 37491604
    829476 8ir1:b (3.3) BS01 rna ? GO:0002181 ... Q02543 37491604
    829477 8ir1:c (3.3) BS01 rna ? GO:0002181 ... P46778 37491604
    829478 8ir1:d (3.3) BS01 rna ? GO:0002181 ... P35268 37491604
    829479 8ir1:e (3.3) BS01 rna ? GO:0000122 ... P62829 37491604
    829480 8ir1:g (3.3) BS01 rna ? GO:0002181 ... P62750 37491604
    829481 8ir1:g (3.3) BS02 rna ? GO:0002181 ... P62750 37491604
    829482 8ir1:h (3.3) BS01 rna ? GO:0002181 ... P61254 37491604
    829483 8ir1:h (3.3) BS02 rna ? GO:0002181 ... P61254 37491604
    829484 8ir1:i (3.3) BS01 rna ? GO:0002181 ... P61353 37491604
    829485 8ir1:j (3.3) BS01 rna ? GO:0002181 ... P62899 37491604
    829486 8ir1:k (3.3) BS01 rna ? GO:0002181 ... P62910 37491604
    829487 8ir1:l (3.3) BS01 rna ? GO:0002181 ... P46779 37491604
    829488 8ir1:m (3.3) BS01 rna ? GO:0002181 ... P62917 37491604
    829489 8ir1:n (3.3) BS01 rna ? GO:0000049 ... P18077 37491604
    829490 8ir1:o (3.3) BS01 rna ? GO:0002181 ... Q02878 37491604
    829491 8ir1:p (3.3) BS01 rna ? GO:0000463 ... P18124 37491604
    829492 8ir1:u (3.3) BS01 peptide ? GO:0003723 ... Q9BVP2 37491604
    829493 8ir1:u (3.3) BS02 rna ? GO:0003723 ... Q9BVP2 37491604
    829494 8ir1:v (3.3) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    829495 8ir1:w (3.3) BS01 rna ? GO:0003723 ... Q13823 37491604
    829496 8ir1:w (3.3) BS02 GTP ? GO:0003723 ... Q13823 37491604
    829497 8ir1:y (3.3) BS01 rna ? GO:0002181 ... P30050 37491604
    829498 8ir1:z (3.3) BS01 rna ? GO:0001099 ... Q9BRT6 37491604
    829499 8ir2:A (1.75) BS01 peptide ? GO:2000781 ... Q9BQI6 37748650
    829500 8ir2:B (1.75) BS01 peptide ? GO:2000781 ... Q9BQI6 37748650
    829501 8ir3:3 (3.5) BS01 rna ? GO:0000463 ... Q6DKI1 37491604
    829502 8ir3:3 (3.5) BS02 rna ? GO:0000463 ... Q6DKI1 37491604
    829503 8ir3:4 (3.5) BS01 rna ? GO:0000079 ... Q9BZE4 37491604
    829504 8ir3:4 (3.5) BS02 rna ? GO:0000079 ... Q9BZE4 37491604
    829505 8ir3:6 (3.5) BS01 rna ? GO:0000054 ... P56537 37491604
    829506 8ir3:7 (3.5) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    829507 8ir3:9 (3.5) BS01 rna ? GO:0003676 ... O00488 37491604
    829508 8ir3:A (3.5) BS01 rna ? GO:0000027 ... P62913 37491604
    829509 8ir3:A (3.5) BS02 rna ? GO:0000027 ... P62913 37491604
    829510 8ir3:B (3.5) BS01 rna ? GO:0002181 ... P39023 37491604
    829511 8ir3:C (3.5) BS01 rna ? GO:0000027 ... P46777 37491604
    829512 8ir3:C (3.5) BS02 rna ? GO:0000027 ... P46777 37491604
    829513 8ir3:D (3.5) BS01 rna ? GO:0002181 ... P36578 37491604
    829514 8ir3:D (3.5) BS02 rna ? GO:0002181 ... P36578 37491604
    829515 8ir3:E (3.5) BS01 rna ? GO:0002181 ... P62888 37491604
    829516 8ir3:F (3.5) BS01 rna ? GO:0002181 ... P49207 37491604
    829517 8ir3:G (3.5) BS01 rna ? GO:0000470 ... P62424 37491604
    829518 8ir3:G (3.5) BS02 rna ? GO:0000470 ... P62424 37491604
    829519 8ir3:H (3.5) BS01 rna ? GO:0000463 ... P42766 37491604
    829520 8ir3:H (3.5) BS02 rna ? GO:0000463 ... P42766 37491604
    829521 8ir3:I (3.5) BS01 rna ? GO:0002181 ... P32969 37491604
    829522 8ir3:J (3.5) BS01 rna ? GO:0000460 ... O95478 37491604
    829523 8ir3:K (3.5) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    829524 8ir3:L (3.5) BS01 rna ? GO:0002181 ... P46776 37491604
    829525 8ir3:M (3.5) BS01 rna ? GO:0002181 ... P61927 37491604
    829526 8ir3:M (3.5) BS02 rna ? GO:0002181 ... P61927 37491604
    829527 8ir3:O (3.5) BS01 rna ? GO:0001501 ... P63173 37491604
    829528 8ir3:P (3.5) BS01 rna ? GO:0002181 ... P62891 37491604
    829529 8ir3:P (3.5) BS02 rna ? GO:0002181 ... P62891 37491604
    829530 8ir3:Q (3.5) BS01 rna ? GO:0001824 ... P26373 37491604
    829531 8ir3:Q (3.5) BS02 rna ? GO:0001824 ... P26373 37491604
    829532 8ir3:R (3.5) BS01 rna ? GO:0000027 ... Q15050 37491604
    829533 8ir3:S (3.5) BS01 rna ? GO:0002181 ... P50914 37491604
    829534 8ir3:T (3.5) BS01 rna ? GO:0000027 ... Q9H7B2 37491604
    829535 8ir3:T (3.5) BS02 rna ? GO:0000027 ... Q9H7B2 37491604
    829536 8ir3:U (3.5) BS01 rna ? GO:0002181 ... P61313 37491604
    829537 8ir3:U (3.5) BS02 rna ? GO:0002181 ... P61313 37491604
    829538 8ir3:V (3.5) BS01 rna ? GO:0002181 ... P40429 37491604
    829539 8ir3:X (3.5) BS01 rna ? GO:0002181 ... P61513 37491604
    829540 8ir3:Y (3.5) BS01 rna ? GO:0002181 ... P18621 37491604
    829541 8ir3:Y (3.5) BS02 rna ? GO:0002181 ... P18621 37491604
    829542 8ir3:Z (3.5) BS01 rna ? GO:0002181 ... Q07020 37491604
    829543 8ir3:a (3.5) BS01 rna ? GO:0002181 ... P84098 37491604
    829544 8ir3:b (3.5) BS01 rna ? GO:0002181 ... Q02543 37491604
    829545 8ir3:c (3.5) BS01 rna ? GO:0002181 ... P46778 37491604
    829546 8ir3:d (3.5) BS01 rna ? GO:0002181 ... P35268 37491604
    829547 8ir3:e (3.5) BS01 rna ? GO:0000122 ... P62829 37491604
    829548 8ir3:f (3.5) BS01 rna ? GO:0000027 ... Q9NZM5 37491604
    829549 8ir3:f (3.5) BS02 rna ? GO:0000027 ... Q9NZM5 37491604
    829550 8ir3:g (3.5) BS01 rna ? GO:0002181 ... P62750 37491604
    829551 8ir3:g (3.5) BS02 rna ? GO:0002181 ... P62750 37491604
    829552 8ir3:h (3.5) BS01 rna ? GO:0002181 ... P61254 37491604
    829553 8ir3:h (3.5) BS02 rna ? GO:0002181 ... P61254 37491604
    829554 8ir3:i (3.5) BS01 rna ? GO:0002181 ... P61353 37491604
    829555 8ir3:j (3.5) BS01 rna ? GO:0002181 ... P62899 37491604
    829556 8ir3:k (3.5) BS01 rna ? GO:0002181 ... P62910 37491604
    829557 8ir3:l (3.5) BS01 rna ? GO:0002181 ... P46779 37491604
    829558 8ir3:m (3.5) BS01 rna ? GO:0002181 ... P62917 37491604
    829559 8ir3:n (3.5) BS01 rna ? GO:0000049 ... P18077 37491604
    829560 8ir3:o (3.5) BS01 rna ? GO:0002181 ... Q02878 37491604
    829561 8ir3:p (3.5) BS01 rna ? GO:0000463 ... P18124 37491604
    829562 8ir3:q (3.5) BS01 rna ? GO:0000463 ... O00541 37491604
    829563 8ir3:q (3.5) BS02 rna ? GO:0000463 ... O00541 37491604
    829564 8ir3:s (3.5) BS01 rna ? GO:0001649 ... O76021 37491604
    829565 8ir3:t (3.5) BS01 rna ? GO:0000794 ... Q9BYG3 37491604
    829566 8ir3:u (3.5) BS01 peptide ? GO:0003723 ... Q9BVP2 37491604
    829567 8ir3:u (3.5) BS02 rna ? GO:0003723 ... Q9BVP2 37491604
    829568 8ir3:v (3.5) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    829569 8ir3:w (3.5) BS01 rna ? GO:0003723 ... Q13823 37491604
    829570 8ir3:w (3.5) BS02 GTP ? GO:0003723 ... Q13823 37491604
    829571 8ir3:y (3.5) BS01 rna ? GO:0002181 ... P30050 37491604
    829572 8ir3:z (3.5) BS01 rna ? GO:0001099 ... Q9BRT6 37491604
    829573 8ir4:A (1.62) BS01 peptide ? GO:2000781 ... Q9BQI6 37748650
    829574 8ir4:B (1.62) BS01 peptide ? GO:2000781 ... Q9BQI6 37748650
    829575 8ir5:A (2.15) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    829576 8ir5:A (2.15) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    829577 8ir5:A (2.15) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    829578 8ir5:A (2.15) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    829579 8ir5:A (2.15) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    829580 8ir5:A (2.15) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    829581 8ir5:A (2.15) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    829582 8ir5:A (2.15) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    829583 8ir5:A (2.15) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    829584 8ir5:B (2.15) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    829585 8ir5:B (2.15) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    829586 8ir5:B (2.15) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    829587 8ir5:B (2.15) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    829588 8ir5:B (2.15) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    829589 8ir5:B (2.15) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    829590 8ir5:B (2.15) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    829591 8ir5:B (2.15) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    829592 8ir5:B (2.15) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    829593 8ir5:B (2.15) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    829594 8ir5:B (2.15) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    829595 8ir5:B (2.15) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    829596 8ir5:B (2.15) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    829597 8ir5:B (2.15) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    829598 8ir5:B (2.15) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    829599 8ir5:B (2.15) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    829600 8ir5:C (2.15) BS01 OEX ? GO:0005737 ... D0VWR7 38297122

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).