SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    829801 8i9t:LQ (3.6) BS01 rna ? GO:0003723 ... G0S9B5 37129998
    829802 8i9t:LS (3.6) BS01 rna ? GO:0003735 ... G0SCE2 37129998
    829803 8i9t:LT (3.6) BS01 rna ? GO:0003735 ... G0S0Z3 37129998
    829804 8i9t:LV (3.6) BS01 rna ? GO:0003735 ... G0SI44 37129998
    829805 8i9t:LY (3.6) BS01 rna ? GO:0003723 ... G0RYN9 37129998
    829806 8i9t:LY (3.6) BS02 rna ? GO:0003723 ... G0RYN9 37129998
    829807 8i9t:Le (3.6) BS01 rna ? GO:0003735 ... G0S6V4 37129998
    829808 8i9t:Lf (3.6) BS01 rna ? GO:0003735 ... G0SCL3 37129998
    829809 8i9t:Lh (3.6) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    829810 8i9t:Lh (3.6) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    829811 8i9t:Li (3.6) BS01 rna ? GO:0003735 ... G0SBN1 37129998
    829812 8i9t:Lj (3.6) BS01 rna ? GO:0003723 ... G0S101 37129998
    829813 8i9t:Lj (3.6) BS02 rna ? GO:0003723 ... G0S101 37129998
    829814 8i9t:Lj (3.6) BS03 ZN ? GO:0003723 ... G0S101 37129998
    829815 8i9t:Lq (3.6) BS01 rna ? GO:0000055 ... G0S4Z9 37129998
    829816 8i9u:A (3.1) BS01 ADP ? GO:0000242 ... P17987 38307855
    829817 8i9u:C (3.1) BS01 ADP ? GO:0002199 ... P49368 38307855
    829818 8i9u:D (3.1) BS01 ADP ? GO:0002199 ... P50991 38307855
    829819 8i9u:F (3.1) BS01 ADP ? GO:0003723 ... P40227 38307855
    829820 8i9u:H (3.1) BS01 ADP ? GO:0002199 ... P50990 38307855
    829821 8i9u:I (3.1) BS01 ADP ? GO:0000242 ... P17987 38307855
    829822 8i9u:K (3.1) BS01 ADP ? GO:0002199 ... P49368 38307855
    829823 8i9u:L (3.1) BS01 ADP ? GO:0002199 ... P50991 38307855
    829824 8i9u:N (3.1) BS01 ADP ? GO:0003723 ... P40227 38307855
    829825 8i9u:P (3.1) BS01 ADP ? GO:0002199 ... P50990 38307855
    829826 8i9v:CA (3.1) BS01 rna ? GO:0000027 ... G0RXZ3 37129998
    829827 8i9v:CB (3.1) BS01 rna ? N/A G0S7X0 37129998
    829828 8i9v:CC (3.1) BS01 rna ? GO:0000463 ... G0SCK6 37129998
    829829 8i9v:CE (3.1) BS01 rna 3.6.4.13 GO:0003676 ... G0RYU9 37129998
    829830 8i9v:CF (3.1) BS01 rna ? GO:0000027 ... G0S616 37129998
    829831 8i9v:CG (3.1) BS01 rna ? GO:0003723 ... G0S435 37129998
    829832 8i9v:CH (3.1) BS01 rna ? GO:0005525 ... G0S8F1 37129998
    829833 8i9v:CH (3.1) BS02 GTP ? GO:0005525 ... G0S8F1 37129998
    829834 8i9v:CI (3.1) BS01 rna ? GO:0003676 ... G0S1H0 37129998
    829835 8i9v:CJ (3.1) BS01 rna ? GO:0000463 ... G0SHX6 37129998
    829836 8i9v:CJ (3.1) BS02 rna ? GO:0000463 ... G0SHX6 37129998
    829837 8i9v:CK (3.1) BS01 rna ? GO:0005730 ... G0S081 37129998
    829838 8i9v:CL (3.1) BS01 rna ? GO:0005525 ... G0SEW3 37129998
    829839 8i9v:CM (3.1) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    829840 8i9v:CN (3.1) BS01 rna ? GO:0000054 ... G0S683 37129998
    829841 8i9v:CO (3.1) BS01 rna ? GO:0030687 ... G0SHK0 37129998
    829842 8i9v:CP (3.1) BS01 rna ? GO:0000470 ... G0SHQ0 37129998
    829843 8i9v:CQ (3.1) BS01 rna ? GO:0003735 ... G0S497 37129998
    829844 8i9v:CQ (3.1) BS02 ZN ? GO:0003735 ... G0S497 37129998
    829845 8i9v:CR (3.1) BS01 rna ? GO:0005730 ... G0S832 37129998
    829846 8i9v:CR (3.1) BS02 rna ? GO:0005730 ... G0S832 37129998
    829847 8i9v:CU (3.1) BS01 rna ? GO:0005730 ... G0SGC2 37129998
    829848 8i9v:CX (3.1) BS01 rna ? GO:0003729 ... G0SGJ0 37129998
    829849 8i9v:Cb (3.1) BS01 rna 3.6.4.13 GO:0003676 ... G0S5S8 37129998
    829850 8i9v:Cc (3.1) BS01 rna ? GO:0005634 ... G0S4M2 37129998
    829851 8i9v:Cd (3.1) BS01 rna ? GO:0000460 ... G0S4S2 37129998
    829852 8i9v:Cd (3.1) BS02 rna ? GO:0000460 ... G0S4S2 37129998
    829853 8i9v:Ce (3.1) BS01 rna ? GO:0000460 ... G0SFD6 37129998
    829854 8i9v:Cf (3.1) BS01 rna ? GO:0003677 ... G0S2I7 37129998
    829855 8i9v:Cz (3.1) BS01 rna ? GO:0005730 ... G0SCP3 37129998
    829856 8i9v:LB (3.1) BS01 rna ? GO:0003723 ... G0RXW1 37129998
    829857 8i9v:LC (3.1) BS01 rna ? GO:0003735 ... G0SFC3 37129998
    829858 8i9v:LC (3.1) BS02 rna ? GO:0003735 ... G0SFC3 37129998
    829859 8i9v:LE (3.1) BS01 rna ? GO:0000027 ... G0S0D6 37129998
    829860 8i9v:LF (3.1) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    829861 8i9v:LG (3.1) BS01 rna ? GO:0003723 ... G0SAJ9 37129998
    829862 8i9v:LG (3.1) BS02 rna ? GO:0003723 ... G0SAJ9 37129998
    829863 8i9v:LG (3.1) BS03 rna ? GO:0003723 ... G0SAJ9 37129998
    829864 8i9v:LH (3.1) BS01 rna ? GO:0003735 ... G0S0E5 37129998
    829865 8i9v:LK (3.1) BS01 rna ? GO:0000027 ... G0SGH8 37129998
    829866 8i9v:LL (3.1) BS01 rna ? GO:0003723 ... G0S992 37129998
    829867 8i9v:LL (3.1) BS02 rna ? GO:0003723 ... G0S992 37129998
    829868 8i9v:LM (3.1) BS01 rna ? GO:0003723 ... G0S1R0 37129998
    829869 8i9v:LN (3.1) BS01 rna ? GO:0002181 ... G0RZ88 37129998
    829870 8i9v:LN (3.1) BS02 rna ? GO:0002181 ... G0RZ88 37129998
    829871 8i9v:LO (3.1) BS01 rna ? GO:0003729 ... G0SH61 37129998
    829872 8i9v:LP (3.1) BS01 rna ? GO:0002181 ... G0SGY1 37129998
    829873 8i9v:LP (3.1) BS02 rna ? GO:0002181 ... G0SGY1 37129998
    829874 8i9v:LQ (3.1) BS01 rna ? GO:0003723 ... G0S9B5 37129998
    829875 8i9v:LS (3.1) BS01 rna ? GO:0003735 ... G0SCE2 37129998
    829876 8i9v:LT (3.1) BS01 rna ? GO:0003735 ... G0S0Z3 37129998
    829877 8i9v:LV (3.1) BS01 rna ? GO:0003735 ... G0SI44 37129998
    829878 8i9v:LY (3.1) BS01 rna ? GO:0003723 ... G0RYN9 37129998
    829879 8i9v:LY (3.1) BS02 rna ? GO:0003723 ... G0RYN9 37129998
    829880 8i9v:Ld (3.1) BS01 rna ? GO:0002181 ... G0SD68 37129998
    829881 8i9v:Le (3.1) BS01 rna ? GO:0003735 ... G0S6V4 37129998
    829882 8i9v:Lf (3.1) BS01 rna ? GO:0003735 ... G0SCL3 37129998
    829883 8i9v:Lh (3.1) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    829884 8i9v:Lh (3.1) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    829885 8i9v:Li (3.1) BS01 rna ? GO:0003735 ... G0SBN1 37129998
    829886 8i9v:Lj (3.1) BS01 rna ? GO:0003723 ... G0S101 37129998
    829887 8i9v:Lj (3.1) BS02 rna ? GO:0003723 ... G0S101 37129998
    829888 8i9v:Lj (3.1) BS03 ZN ? GO:0003723 ... G0S101 37129998
    829889 8i9v:Lq (3.1) BS01 rna ? GO:0000055 ... G0S4Z9 37129998
    829890 8i9w:CA (3.1) BS01 rna ? GO:0000027 ... G0RXZ3 37129998
    829891 8i9w:CB (3.1) BS01 rna ? N/A G0S7X0 37129998
    829892 8i9w:CC (3.1) BS01 rna ? GO:0000463 ... G0SCK6 37129998
    829893 8i9w:CE (3.1) BS01 rna 3.6.4.13 GO:0003676 ... G0RYU9 37129998
    829894 8i9w:CF (3.1) BS01 rna ? GO:0000027 ... G0S616 37129998
    829895 8i9w:CG (3.1) BS01 rna ? GO:0003723 ... G0S435 37129998
    829896 8i9w:CH (3.1) BS01 rna ? GO:0005525 ... G0S8F1 37129998
    829897 8i9w:CH (3.1) BS02 GTP ? GO:0005525 ... G0S8F1 37129998
    829898 8i9w:CI (3.1) BS01 rna ? GO:0003676 ... G0S1H0 37129998
    829899 8i9w:CJ (3.1) BS01 rna ? GO:0000463 ... G0SHX6 37129998
    829900 8i9w:CJ (3.1) BS02 rna ? GO:0000463 ... G0SHX6 37129998
    829901 8i9w:CK (3.1) BS01 rna ? GO:0005730 ... G0S081 37129998
    829902 8i9w:CL (3.1) BS01 rna ? GO:0005525 ... G0SEW3 37129998
    829903 8i9w:CM (3.1) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    829904 8i9w:CN (3.1) BS01 rna ? GO:0000054 ... G0S683 37129998
    829905 8i9w:CO (3.1) BS01 rna ? GO:0030687 ... G0SHK0 37129998
    829906 8i9w:CP (3.1) BS01 rna ? GO:0000470 ... G0SHQ0 37129998
    829907 8i9w:CQ (3.1) BS01 rna ? GO:0003735 ... G0S497 37129998
    829908 8i9w:CQ (3.1) BS02 ZN ? GO:0003735 ... G0S497 37129998
    829909 8i9w:CR (3.1) BS01 rna ? GO:0005730 ... G0S832 37129998
    829910 8i9w:CR (3.1) BS02 rna ? GO:0005730 ... G0S832 37129998
    829911 8i9w:CS (3.1) BS01 rna ? GO:0000463 ... G0SGD8 37129998
    829912 8i9w:CU (3.1) BS01 rna ? GO:0005730 ... G0SGC2 37129998
    829913 8i9w:CV (3.1) BS01 rna ? GO:0003735 ... G0SHJ6 37129998
    829914 8i9w:CX (3.1) BS01 rna ? GO:0003729 ... G0SGJ0 37129998
    829915 8i9w:Cb (3.1) BS01 rna 3.6.4.13 GO:0003676 ... G0S5S8 37129998
    829916 8i9w:Cz (3.1) BS01 rna ? GO:0005730 ... G0SCP3 37129998
    829917 8i9w:LB (3.1) BS01 rna ? GO:0003723 ... G0RXW1 37129998
    829918 8i9w:LC (3.1) BS01 rna ? GO:0003735 ... G0SFC3 37129998
    829919 8i9w:LC (3.1) BS02 rna ? GO:0003735 ... G0SFC3 37129998
    829920 8i9w:LE (3.1) BS01 rna ? GO:0000027 ... G0S0D6 37129998
    829921 8i9w:LF (3.1) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    829922 8i9w:LG (3.1) BS01 rna ? GO:0003723 ... G0SAJ9 37129998
    829923 8i9w:LG (3.1) BS02 rna ? GO:0003723 ... G0SAJ9 37129998
    829924 8i9w:LH (3.1) BS01 rna ? GO:0003735 ... G0S0E5 37129998
    829925 8i9w:LK (3.1) BS01 rna ? GO:0000027 ... G0SGH8 37129998
    829926 8i9w:LL (3.1) BS01 rna ? GO:0003723 ... G0S992 37129998
    829927 8i9w:LM (3.1) BS01 rna ? GO:0003723 ... G0S1R0 37129998
    829928 8i9w:LN (3.1) BS01 rna ? GO:0002181 ... G0RZ88 37129998
    829929 8i9w:LN (3.1) BS02 rna ? GO:0002181 ... G0RZ88 37129998
    829930 8i9w:LO (3.1) BS01 rna ? GO:0003729 ... G0SH61 37129998
    829931 8i9w:LP (3.1) BS01 rna ? GO:0002181 ... G0SGY1 37129998
    829932 8i9w:LP (3.1) BS02 rna ? GO:0002181 ... G0SGY1 37129998
    829933 8i9w:LQ (3.1) BS01 rna ? GO:0003723 ... G0S9B5 37129998
    829934 8i9w:LS (3.1) BS01 rna ? GO:0003735 ... G0SCE2 37129998
    829935 8i9w:LT (3.1) BS01 rna ? GO:0003735 ... G0S0Z3 37129998
    829936 8i9w:LV (3.1) BS01 rna ? GO:0003735 ... G0SI44 37129998
    829937 8i9w:LX (3.1) BS01 rna ? GO:0003735 ... G0S507 37129998
    829938 8i9w:LX (3.1) BS02 rna ? GO:0003735 ... G0S507 37129998
    829939 8i9w:LY (3.1) BS01 rna ? GO:0003723 ... G0RYN9 37129998
    829940 8i9w:LY (3.1) BS02 rna ? GO:0003723 ... G0RYN9 37129998
    829941 8i9w:Ld (3.1) BS01 rna ? GO:0002181 ... G0SD68 37129998
    829942 8i9w:Le (3.1) BS01 rna ? GO:0003735 ... G0S6V4 37129998
    829943 8i9w:Lf (3.1) BS01 rna ? GO:0003735 ... G0SCL3 37129998
    829944 8i9w:Lh (3.1) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    829945 8i9w:Lh (3.1) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    829946 8i9w:Li (3.1) BS01 rna ? GO:0003735 ... G0SBN1 37129998
    829947 8i9w:Lj (3.1) BS01 rna ? GO:0003723 ... G0S101 37129998
    829948 8i9w:Lj (3.1) BS02 rna ? GO:0003723 ... G0S101 37129998
    829949 8i9w:Lj (3.1) BS03 ZN ? GO:0003723 ... G0S101 37129998
    829950 8i9w:Lq (3.1) BS01 rna ? GO:0000055 ... G0S4Z9 37129998
    829951 8i9x:CA (2.8) BS01 rna ? GO:0000027 ... G0RXZ3 37129998
    829952 8i9x:CB (2.8) BS01 rna ? N/A G0S7X0 37129998
    829953 8i9x:CC (2.8) BS01 rna ? GO:0000463 ... G0SCK6 37129998
    829954 8i9x:CE (2.8) BS01 rna 3.6.4.13 GO:0003676 ... G0RYU9 37129998
    829955 8i9x:CF (2.8) BS01 rna ? GO:0000027 ... G0S616 37129998
    829956 8i9x:CG (2.8) BS01 rna ? GO:0003723 ... G0S435 37129998
    829957 8i9x:CH (2.8) BS01 rna ? GO:0005525 ... G0S8F1 37129998
    829958 8i9x:CH (2.8) BS02 GTP ? GO:0005525 ... G0S8F1 37129998
    829959 8i9x:CI (2.8) BS01 rna ? GO:0003676 ... G0S1H0 37129998
    829960 8i9x:CJ (2.8) BS01 rna ? GO:0000463 ... G0SHX6 37129998
    829961 8i9x:CJ (2.8) BS02 rna ? GO:0000463 ... G0SHX6 37129998
    829962 8i9x:CK (2.8) BS01 rna ? GO:0005730 ... G0S081 37129998
    829963 8i9x:CL (2.8) BS01 rna ? GO:0005525 ... G0SEW3 37129998
    829964 8i9x:CM (2.8) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    829965 8i9x:CM (2.8) BS02 rna ? GO:0000463 ... G0SFL0 37129998
    829966 8i9x:CN (2.8) BS01 rna ? GO:0000054 ... G0S683 37129998
    829967 8i9x:CO (2.8) BS01 rna ? GO:0030687 ... G0SHK0 37129998
    829968 8i9x:CP (2.8) BS01 rna ? GO:0000470 ... G0SHQ0 37129998
    829969 8i9x:CQ (2.8) BS01 rna ? GO:0003735 ... G0S497 37129998
    829970 8i9x:CQ (2.8) BS02 ZN ? GO:0003735 ... G0S497 37129998
    829971 8i9x:CR (2.8) BS01 rna ? GO:0005730 ... G0S832 37129998
    829972 8i9x:CR (2.8) BS02 rna ? GO:0005730 ... G0S832 37129998
    829973 8i9x:CS (2.8) BS01 rna ? GO:0000463 ... G0SGD8 37129998
    829974 8i9x:CT (2.8) BS01 rna ? GO:0003682 ... G0S5L0 37129998
    829975 8i9x:CU (2.8) BS01 rna ? GO:0005730 ... G0SGC2 37129998
    829976 8i9x:CV (2.8) BS01 rna ? GO:0003735 ... G0SHJ6 37129998
    829977 8i9x:CX (2.8) BS01 rna ? GO:0003729 ... G0SGJ0 37129998
    829978 8i9x:CY (2.8) BS01 rna ? GO:0005634 ... G0SD05 37129998
    829979 8i9x:Cb (2.8) BS01 rna 3.6.4.13 GO:0003676 ... G0S5S8 37129998
    829980 8i9x:Cz (2.8) BS01 rna ? GO:0005730 ... G0SCP3 37129998
    829981 8i9x:LB (2.8) BS01 rna ? GO:0003723 ... G0RXW1 37129998
    829982 8i9x:LC (2.8) BS01 rna ? GO:0003735 ... G0SFC3 37129998
    829983 8i9x:LC (2.8) BS02 rna ? GO:0003735 ... G0SFC3 37129998
    829984 8i9x:LE (2.8) BS01 rna ? GO:0000027 ... G0S0D6 37129998
    829985 8i9x:LF (2.8) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    829986 8i9x:LG (2.8) BS01 rna ? GO:0003723 ... G0SAJ9 37129998
    829987 8i9x:LG (2.8) BS02 rna ? GO:0003723 ... G0SAJ9 37129998
    829988 8i9x:LH (2.8) BS01 rna ? GO:0003735 ... G0S0E5 37129998
    829989 8i9x:LK (2.8) BS01 rna ? GO:0000027 ... G0SGH8 37129998
    829990 8i9x:LL (2.8) BS01 rna ? GO:0003723 ... G0S992 37129998
    829991 8i9x:LL (2.8) BS02 rna ? GO:0003723 ... G0S992 37129998
    829992 8i9x:LM (2.8) BS01 rna ? GO:0003723 ... G0S1R0 37129998
    829993 8i9x:LN (2.8) BS01 rna ? GO:0002181 ... G0RZ88 37129998
    829994 8i9x:LN (2.8) BS02 rna ? GO:0002181 ... G0RZ88 37129998
    829995 8i9x:LO (2.8) BS01 rna ? GO:0003729 ... G0SH61 37129998
    829996 8i9x:LP (2.8) BS01 rna ? GO:0002181 ... G0SGY1 37129998
    829997 8i9x:LP (2.8) BS02 rna ? GO:0002181 ... G0SGY1 37129998
    829998 8i9x:LQ (2.8) BS01 rna ? GO:0003723 ... G0S9B5 37129998
    829999 8i9x:LR (2.8) BS01 rna ? GO:0003735 ... G0S9T3 37129998
    830000 8i9x:LS (2.8) BS01 rna ? GO:0003735 ... G0SCE2 37129998

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).