SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    830201 8ia0:CY (2.7) BS01 rna ? GO:0005634 ... G0SD05 37129998
    830202 8ia0:CZ (2.7) BS01 rna ? GO:0003723 ... G0S0I6 37129998
    830203 8ia0:Ca (2.7) BS01 rna ? GO:0005730 ... G0S7E9 37129998
    830204 8ia0:Cz (2.7) BS01 rna ? GO:0005730 ... G0SCP3 37129998
    830205 8ia0:LA (2.7) BS01 rna ? GO:0002181 ... G0S4P8 37129998
    830206 8ia0:LB (2.7) BS01 rna ? GO:0003723 ... G0RXW1 37129998
    830207 8ia0:LC (2.7) BS01 rna ? GO:0003735 ... G0SFC3 37129998
    830208 8ia0:LC (2.7) BS02 rna ? GO:0003735 ... G0SFC3 37129998
    830209 8ia0:LE (2.7) BS01 rna ? GO:0000027 ... G0S0D6 37129998
    830210 8ia0:LF (2.7) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    830211 8ia0:LG (2.7) BS01 rna ? GO:0003723 ... G0SAJ9 37129998
    830212 8ia0:LG (2.7) BS02 rna ? GO:0003723 ... G0SAJ9 37129998
    830213 8ia0:LH (2.7) BS01 rna ? GO:0003735 ... G0S0E5 37129998
    830214 8ia0:LK (2.7) BS01 rna ? GO:0000027 ... G0SGH8 37129998
    830215 8ia0:LL (2.7) BS01 rna ? GO:0003723 ... G0S992 37129998
    830216 8ia0:LL (2.7) BS02 rna ? GO:0003723 ... G0S992 37129998
    830217 8ia0:LM (2.7) BS01 rna ? GO:0003723 ... G0S1R0 37129998
    830218 8ia0:LN (2.7) BS01 rna ? GO:0002181 ... G0RZ88 37129998
    830219 8ia0:LN (2.7) BS02 rna ? GO:0002181 ... G0RZ88 37129998
    830220 8ia0:LO (2.7) BS01 rna ? GO:0003729 ... G0SH61 37129998
    830221 8ia0:LP (2.7) BS01 rna ? GO:0002181 ... G0SGY1 37129998
    830222 8ia0:LP (2.7) BS02 rna ? GO:0002181 ... G0SGY1 37129998
    830223 8ia0:LQ (2.7) BS01 rna ? GO:0003723 ... G0S9B5 37129998
    830224 8ia0:LR (2.7) BS01 rna ? GO:0003735 ... G0S9T3 37129998
    830225 8ia0:LS (2.7) BS01 rna ? GO:0003735 ... G0SCE2 37129998
    830226 8ia0:LT (2.7) BS01 rna ? GO:0003735 ... G0S0Z3 37129998
    830227 8ia0:LU (2.7) BS01 rna ? GO:0002181 ... G0SDS8 37129998
    830228 8ia0:LV (2.7) BS01 rna ? GO:0003735 ... G0SI44 37129998
    830229 8ia0:LX (2.7) BS01 rna ? GO:0003735 ... G0S507 37129998
    830230 8ia0:LX (2.7) BS02 rna ? GO:0003735 ... G0S507 37129998
    830231 8ia0:LY (2.7) BS01 rna ? GO:0003723 ... G0RYN9 37129998
    830232 8ia0:LY (2.7) BS02 rna ? GO:0003723 ... G0RYN9 37129998
    830233 8ia0:LZ (2.7) BS01 rna ? GO:0003735 ... G0RZE9 37129998
    830234 8ia0:Lc (2.7) BS01 rna ? GO:0003723 ... G0SEI0 37129998
    830235 8ia0:Ld (2.7) BS01 rna ? GO:0002181 ... G0SD68 37129998
    830236 8ia0:Le (2.7) BS01 rna ? GO:0003735 ... G0S6V4 37129998
    830237 8ia0:Lf (2.7) BS01 rna ? GO:0003735 ... G0SCL3 37129998
    830238 8ia0:Lg (2.7) BS01 rna ? GO:0003735 ... G0SFN0 37129998
    830239 8ia0:Lh (2.7) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    830240 8ia0:Lh (2.7) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    830241 8ia0:Li (2.7) BS01 rna ? GO:0003735 ... G0SBN1 37129998
    830242 8ia0:Lj (2.7) BS01 rna ? GO:0003723 ... G0S101 37129998
    830243 8ia0:Lj (2.7) BS02 rna ? GO:0003723 ... G0S101 37129998
    830244 8ia0:Lj (2.7) BS03 ZN ? GO:0003723 ... G0S101 37129998
    830245 8ia0:Lk (2.7) BS01 rna ? GO:0003735 ... G0SG89 37129998
    830246 8ia0:Ll (2.7) BS01 rna ? GO:0003735 ... Q2H9R2 37129998
    830247 8ia0:Ll (2.7) BS02 rna ? GO:0003735 ... Q2H9R2 37129998
    830248 8ia0:Lp (2.7) BS01 ZN ? GO:0003735 ... G0S6B0 37129998
    830249 8ia0:Lq (2.7) BS01 rna ? GO:0000055 ... G0S4Z9 37129998
    830250 8ia3:A (3.5) BS01 dna ? GO:0046983 ... Q15853 37690682
    830251 8ia3:A (3.5) BS02 dna ? GO:0046983 ... Q15853 37690682
    830252 8ia3:B (3.5) BS01 dna ? GO:0046983 ... Q15853 37690682
    830253 8ia3:B (3.5) BS02 dna ? GO:0046983 ... Q15853 37690682
    830254 8ia3:E (3.5) BS01 dna ? GO:0046983 ... Q15853 37690682
    830255 8ia3:E (3.5) BS02 dna ? GO:0046983 ... Q15853 37690682
    830256 8ia3:F (3.5) BS01 dna ? GO:0046983 ... Q15853 37690682
    830257 8ia3:F (3.5) BS02 dna ? GO:0046983 ... Q15853 37690682
    830258 8ia4:B (2.0) BS01 peptide 3.1.-.- GO:0004519 ... Q73QW4 38627399
    830259 8ia5:A (1.93) BS01 peptide ? GO:0005634 ... O15151 N/A
    830260 8ia5:A (1.93) BS02 NUT ? GO:0005634 ... O15151 N/A
    830261 8ia7:R (3.1) BS01 peptide ? GO:0004930 ... P32239 35672283
    830262 8ia8:A (2.86) BS01 peptide ? GO:0002430 ... Q16581 N/A
    830263 8ia9:A (2.5) BS01 MG ? GO:0008168 ... Q9ALN2 37703985
    830264 8ia9:B (2.5) BS01 MG ? GO:0008168 ... Q9ALN2 37703985
    830265 8iaa:A (2.1) BS01 SAH ? GO:0008168 ... Q9ALN2 37703985
    830266 8iaa:A (2.1) BS02 MG ? GO:0008168 ... Q9ALN2 37703985
    830267 8iaa:B (2.1) BS01 SAH ? GO:0008168 ... Q9ALN2 37703985
    830268 8iaa:B (2.1) BS02 MG ? GO:0008168 ... Q9ALN2 37703985
    830269 8iab:A (2.96) BS01 ATP ? GO:0005247 ... P92941 37573431
    830270 8iab:A (2.96) BS02 PIO ? GO:0005247 ... P92941 37573431
    830271 8iab:A (2.96) BS03 CL ? GO:0005247 ... P92941 37573431
    830272 8iab:A (2.96) BS04 CL ? GO:0005247 ... P92941 37573431
    830273 8iab:A (2.96) BS05 CL ? GO:0005247 ... P92941 37573431
    830274 8iab:A (2.96) BS06 PIO ? GO:0005247 ... P92941 37573431
    830275 8iab:B (2.96) BS01 PIO ? GO:0005247 ... P92941 37573431
    830276 8iab:B (2.96) BS02 ATP ? GO:0005247 ... P92941 37573431
    830277 8iab:B (2.96) BS03 PIO ? GO:0005247 ... P92941 37573431
    830278 8iab:B (2.96) BS04 CL ? GO:0005247 ... P92941 37573431
    830279 8iab:B (2.96) BS05 CL ? GO:0005247 ... P92941 37573431
    830280 8iab:B (2.96) BS06 CL ? GO:0005247 ... P92941 37573431
    830281 8iad:A (3.16) BS01 ATP ? GO:0005247 ... P92941 37573431
    830282 8iad:A (3.16) BS02 PIO ? GO:0005247 ... P92941 37573431
    830283 8iad:A (3.16) BS03 PIO ? GO:0005247 ... P92941 37573431
    830284 8iad:B (3.16) BS01 PIO ? GO:0005247 ... P92941 37573431
    830285 8iad:B (3.16) BS02 ATP ? GO:0005247 ... P92941 37573431
    830286 8iad:B (3.16) BS03 PIO ? GO:0005247 ... P92941 37573431
    830287 8iag:A (1.5) BS01 HEM N/A GO:0004601 ... A0AAN0NP18 N/A
    830288 8iag:A (1.5) BS02 MG N/A GO:0004601 ... A0AAN0NP18 N/A
    830289 8iag:B (1.5) BS01 HEM N/A GO:0004601 ... A0AAN0NP18 N/A
    830290 8iag:B (1.5) BS02 MG N/A GO:0004601 ... A0AAN0NP18 N/A
    830291 8iah:A (3.6) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830292 8iah:B (3.6) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830293 8iah:C (3.6) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830294 8iah:D (3.6) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830295 8iah:E (3.6) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830296 8iah:F (3.6) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830297 8iah:G (3.6) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830298 8iah:H (3.6) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830299 8iah:I (3.6) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830300 8iah:J (3.6) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830301 8iah:K (3.6) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830302 8iah:L (3.6) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830303 8iai:A (3.5) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830304 8iai:B (3.5) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830305 8iai:C (3.5) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830306 8iai:D (3.5) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830307 8iai:E (3.5) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830308 8iai:F (3.5) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830309 8iai:G (3.5) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830310 8iai:H (3.5) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830311 8iai:I (3.5) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830312 8iai:J (3.5) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830313 8iai:K (3.5) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 37044097
    830314 8iaj:A (3.1) BS01 PLP 2.3.1.50 GO:0009058 ... P25045
    Q94IB8
    38285738
    830315 8iaj:B (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    830316 8iaj:B (3.1) BS02 Z1T 2.3.1.50 GO:0004758 ... P40970 38285738
    830317 8iaj:D (3.1) BS01 Z1T ? GO:0003674 ... Q06144 38285738
    830318 8iaj:E (3.1) BS01 PLP 2.3.1.50 GO:0009058 ... P25045
    Q94IB8
    38285738
    830319 8iaj:F (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    830320 8iaj:F (3.1) BS02 Z1T 2.3.1.50 GO:0004758 ... P40970 38285738
    830321 8iaj:H (3.1) BS01 Z1T ? GO:0003674 ... Q06144 38285738
    830322 8iak:A (3.1) BS01 PLP 2.3.1.50 GO:0009058 ... P25045
    Q94IB8
    38285738
    830323 8iak:B (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    830324 8iak:E (3.1) BS01 PLP 2.3.1.50 GO:0009058 ... P25045
    Q94IB8
    38285738
    830325 8iak:F (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    830326 8iam:B (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    830327 8iam:B (3.1) BS02 Z1T 2.3.1.50 GO:0004758 ... P40970 38285738
    830328 8iam:D (3.1) BS01 Z1T ? GO:0003674 ... Q06144 38285738
    830329 8iam:F (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    830330 8iam:F (3.1) BS02 Z1T 2.3.1.50 GO:0004758 ... P40970 38285738
    830331 8iam:H (3.1) BS01 Z1T ? GO:0003674 ... Q06144 38285738
    830332 8ian:A (2.08) BS01 CA N/A GO:0052689 ... A0AA82WPI3 38647782
    830333 8ian:B (2.08) BS01 CA N/A GO:0052689 ... A0AA82WPI3 38647782
    830334 8iao:AC (4.2) BS01 HEM N/A GO:0001666 ... P00158 39395414
    830335 8iao:AC (4.2) BS02 HEM N/A GO:0001666 ... P00158 39395414
    830336 8iao:AC (4.2) BS03 U10 N/A GO:0001666 ... P00158 39395414
    830337 8iao:AC (4.2) BS04 UQ6 N/A GO:0001666 ... P00158 39395414
    830338 8iao:AD (4.2) BS01 HEC N/A GO:0005515 ... Q9D0M3 39395414
    830339 8iao:Aa (4.2) BS01 peptide N/A GO:0005515 ... Q9CZ13 39395414
    830340 8iao:Ab (4.2) BS01 peptide N/A GO:0004222 ... Q9DB77 39395414
    830341 8iao:Ac (4.2) BS01 HEM N/A GO:0001666 ... P00158 39395414
    830342 8iao:Ac (4.2) BS02 HEM N/A GO:0001666 ... P00158 39395414
    830343 8iao:Ac (4.2) BS03 U10 N/A GO:0001666 ... P00158 39395414
    830344 8iao:Ac (4.2) BS04 UQ6 N/A GO:0001666 ... P00158 39395414
    830345 8iao:Ad (4.2) BS01 HEC N/A GO:0005515 ... Q9D0M3 39395414
    830346 8iao:B (4.2) BS01 SF4 N/A GO:0002020 ... Q9DC70 39395414
    830347 8iao:B (4.2) BS02 UQ1 N/A GO:0002020 ... Q9DC70 39395414
    830348 8iao:B (4.2) BS03 UQ9 N/A GO:0002020 ... Q9DC70 39395414
    830349 8iao:D (4.2) BS01 SF4 N/A GO:0003954 ... Q91WD5 39395414
    830350 8iao:D (4.2) BS02 UQ1 N/A GO:0003954 ... Q91WD5 39395414
    830351 8iao:E (4.2) BS01 peptide N/A GO:0003954 ... Q9D6J6 39395414
    830352 8iao:E (4.2) BS02 FES N/A GO:0003954 ... Q9D6J6 39395414
    830353 8iao:F (4.2) BS01 peptide N/A GO:0005515 ... Q91YT0 39395414
    830354 8iao:F (4.2) BS02 FMN N/A GO:0005515 ... Q91YT0 39395414
    830355 8iao:F (4.2) BS03 SF4 N/A GO:0005515 ... Q91YT0 39395414
    830356 8iao:G (4.2) BS01 SF4 N/A GO:0005515 ... Q91VD9 39395414
    830357 8iao:G (4.2) BS02 SF4 N/A GO:0005515 ... Q91VD9 39395414
    830358 8iao:G (4.2) BS03 FES N/A GO:0005515 ... Q91VD9 39395414
    830359 8iao:H (4.2) BS01 UQ9 N/A GO:0001666 ... P03888 39395414
    830360 8iao:I (4.2) BS01 SF4 N/A GO:0003954 ... Q8K3J1 39395414
    830361 8iao:I (4.2) BS02 SF4 N/A GO:0003954 ... Q8K3J1 39395414
    830362 8iao:O (4.2) BS01 ADP N/A GO:0005737 ... Q99LC3 39395414
    830363 8iao:P (4.2) BS01 NDP N/A GO:0003954 ... Q9DC69 39395414
    830364 8iao:R (4.2) BS01 ZN N/A GO:0001822 ... P52503 39395414
    830365 8iao:W (4.2) BS01 EHZ N/A GO:0003674 ... Q9CQZ5 39395414
    830366 8iao:n (4.2) BS01 EHZ N/A GO:0005739 ... Q9CQJ8 39395414
    830367 8iap:B (3.2) BS01 SF4 N/A GO:0002020 ... Q9DC70 39395414
    830368 8iap:B (3.2) BS02 UQ1 N/A GO:0002020 ... Q9DC70 39395414
    830369 8iap:B (3.2) BS03 UQ9 N/A GO:0002020 ... Q9DC70 39395414
    830370 8iap:D (3.2) BS01 SF4 N/A GO:0003954 ... Q91WD5 39395414
    830371 8iap:D (3.2) BS02 UQ1 N/A GO:0003954 ... Q91WD5 39395414
    830372 8iap:E (3.2) BS01 peptide N/A GO:0003954 ... Q9D6J6 39395414
    830373 8iap:E (3.2) BS02 FES N/A GO:0003954 ... Q9D6J6 39395414
    830374 8iap:F (3.2) BS01 peptide N/A GO:0005515 ... Q91YT0 39395414
    830375 8iap:F (3.2) BS02 FMN N/A GO:0005515 ... Q91YT0 39395414
    830376 8iap:F (3.2) BS03 SF4 N/A GO:0005515 ... Q91YT0 39395414
    830377 8iap:G (3.2) BS01 SF4 N/A GO:0005515 ... Q91VD9 39395414
    830378 8iap:G (3.2) BS02 SF4 N/A GO:0005515 ... Q91VD9 39395414
    830379 8iap:G (3.2) BS03 FES N/A GO:0005515 ... Q91VD9 39395414
    830380 8iap:H (3.2) BS01 UQ9 N/A GO:0001666 ... P03888 39395414
    830381 8iap:I (3.2) BS01 SF4 N/A GO:0003954 ... Q8K3J1 39395414
    830382 8iap:I (3.2) BS02 SF4 N/A GO:0003954 ... Q8K3J1 39395414
    830383 8iap:P (3.2) BS01 NDP N/A GO:0003954 ... Q9DC69 39395414
    830384 8iap:R (3.2) BS01 ZN N/A GO:0001822 ... P52503 39395414
    830385 8iap:W (3.2) BS01 EHZ N/A GO:0003674 ... Q9CQZ5 39395414
    830386 8iaq:M (3.4) BS01 peptide N/A GO:0001666 ... P03911 39395414
    830387 8iaq:N (3.4) BS01 peptide N/A GO:0005739 ... P03893 39395414
    830388 8iaq:O (3.4) BS01 ADP N/A GO:0005737 ... Q99LC3 39395414
    830389 8iaq:d (3.4) BS01 peptide N/A GO:0005737 ... Q9CQ54 39395414
    830390 8iaq:e (3.4) BS01 peptide N/A GO:0003674 ... Q99LY9 39395414
    830391 8iaq:h (3.4) BS01 peptide N/A GO:0003674 ... Q9CQH3 39395414
    830392 8iaq:n (3.4) BS01 EHZ N/A GO:0005739 ... Q9CQJ8 39395414
    830393 8iar:AC (3.4) BS01 HEM N/A GO:0001666 ... P00158 39395414
    830394 8iar:AC (3.4) BS02 HEM N/A GO:0001666 ... P00158 39395414
    830395 8iar:AC (3.4) BS03 U10 N/A GO:0001666 ... P00158 39395414
    830396 8iar:AC (3.4) BS04 UQ6 N/A GO:0001666 ... P00158 39395414
    830397 8iar:AD (3.4) BS01 HEC N/A GO:0005515 ... Q9D0M3 39395414
    830398 8iar:Aa (3.4) BS01 peptide N/A GO:0005515 ... Q9CZ13 39395414
    830399 8iar:Ab (3.4) BS01 peptide N/A GO:0004222 ... Q9DB77 39395414
    830400 8iar:Ac (3.4) BS01 HEM N/A GO:0001666 ... P00158 39395414

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).